Carg23979 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg23979
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	zinc finger CCCH domain-containing protein 20-like
Location	Carg_Chr12: 3813502 .. 3814350 (+)
RNA-Seq Expression	Carg23979
Synteny	Carg23979

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTATCGTGAAACGATATGCCCCACCGTCGCCGCACGTGTCGCCGCTCGATTCGCCCACGAGAGCGGTCATGGAGTTCGATTCGTCATTCTGGGAGGAACAGGATCTGCCGGCGGCGGTGGACGCGTTCACCTGCGACGATTTTCGTATGTACGAGTTCAAAGTTCGCTCGTGCGCACGTGGGAGGTCCCACGATTGGACTAAATGTCCGTACGCTCACGTCGGCGAGAAGGCTCGCCGCCGTGATCCGAGGAAGTTCAGCTATTCTGGCACTGAATGCCCTGCTTTACGCCATGGGTGTTGTAAGAAAGGGGACGCCTGTGAGTTCGCTCATGGTACATTCGAAAGTTGGCTCCACCCAGACCGGTACCGGACTCAGCCGTGCCGTGACGGAATCGCCTGCCGGCGGCGAGTCTGTTTCTTCGCCCATACGTTGGAGCAACTCCGGATTCCGGCGAAACAGAGCCTCATGTCTCCACGGGCGGCTAAGGAAATCGCCGCTGCTGTAACATCGCCGACGTCGATCCTAATCTCGCCGGATTCGCCTCCAATGTCTCCGATCAGCCCTGTAACCACCGGCGGCGAATCGTTCAGCAGATTAGTCCCACTGATGCACAATCTCCAGCTTGACAAATCAAAGAAAAATCCAGCCGTCTCCGGCTTCGATTCAAGCCCCCGGCGGAACTCCGGCGGGTTCGATCTGTGGGACAGAACTTTCGAAGAAGAACCGGCAATGGAGAGAGTGGAATCTGGAAGAAACCTCCGTGCCCAAATGTACGCCAAATTAATGAGAGAGAATTCGGTGGACAGAATCCGGCCACTGATATCGGCCGGATCTCAAAGCTAA

mRNA sequence

ATGTCTATCGTGAAACGATATGCCCCACCGTCGCCGCACGTGTCGCCGCTCGATTCGCCCACGAGAGCGGTCATGGAGTTCGATTCGTCATTCTGGGAGGAACAGGATCTGCCGGCGGCGGTGGACGCGTTCACCTGCGACGATTTTCGTATGTACGAGTTCAAAGTTCGCTCGTGCGCACGTGGGAGGTCCCACGATTGGACTAAATGTCCGTACGCTCACGTCGGCGAGAAGGCTCGCCGCCGTGATCCGAGGAAGTTCAGCTATTCTGGCACTGAATGCCCTGCTTTACGCCATGGGTGTTGTAAGAAAGGGGACGCCTGTGAGTTCGCTCATGGTACATTCGAAAGTTGGCTCCACCCAGACCGGTACCGGACTCAGCCGTGCCGTGACGGAATCGCCTGCCGGCGGCGAGTCTGTTTCTTCGCCCATACGTTGGAGCAACTCCGGATTCCGGCGAAACAGAGCCTCATGTCTCCACGGGCGGCTAAGGAAATCGCCGCTGCTGTAACATCGCCGACGTCGATCCTAATCTCGCCGGATTCGCCTCCAATGTCTCCGATCAGCCCTGTAACCACCGGCGGCGAATCGTTCAGCAGATTAGTCCCACTGATGCACAATCTCCAGCTTGACAAATCAAAGAAAAATCCAGCCGTCTCCGGCTTCGATTCAAGCCCCCGGCGGAACTCCGGCGGGTTCGATCTGTGGGACAGAACTTTCGAAGAAGAACCGGCAATGGAGAGAGTGGAATCTGGAAGAAACCTCCGTGCCCAAATGTACGCCAAATTAATGAGAGAGAATTCGGTGGACAGAATCCGGCCACTGATATCGGCCGGATCTCAAAGCTAA

Coding sequence (CDS)

ATGTCTATCGTGAAACGATATGCCCCACCGTCGCCGCACGTGTCGCCGCTCGATTCGCCCACGAGAGCGGTCATGGAGTTCGATTCGTCATTCTGGGAGGAACAGGATCTGCCGGCGGCGGTGGACGCGTTCACCTGCGACGATTTTCGTATGTACGAGTTCAAAGTTCGCTCGTGCGCACGTGGGAGGTCCCACGATTGGACTAAATGTCCGTACGCTCACGTCGGCGAGAAGGCTCGCCGCCGTGATCCGAGGAAGTTCAGCTATTCTGGCACTGAATGCCCTGCTTTACGCCATGGGTGTTGTAAGAAAGGGGACGCCTGTGAGTTCGCTCATGGTACATTCGAAAGTTGGCTCCACCCAGACCGGTACCGGACTCAGCCGTGCCGTGACGGAATCGCCTGCCGGCGGCGAGTCTGTTTCTTCGCCCATACGTTGGAGCAACTCCGGATTCCGGCGAAACAGAGCCTCATGTCTCCACGGGCGGCTAAGGAAATCGCCGCTGCTGTAACATCGCCGACGTCGATCCTAATCTCGCCGGATTCGCCTCCAATGTCTCCGATCAGCCCTGTAACCACCGGCGGCGAATCGTTCAGCAGATTAGTCCCACTGATGCACAATCTCCAGCTTGACAAATCAAAGAAAAATCCAGCCGTCTCCGGCTTCGATTCAAGCCCCCGGCGGAACTCCGGCGGGTTCGATCTGTGGGACAGAACTTTCGAAGAAGAACCGGCAATGGAGAGAGTGGAATCTGGAAGAAACCTCCGTGCCCAAATGTACGCCAAATTAATGAGAGAGAATTCGGTGGACAGAATCCGGCCACTGATATCGGCCGGATCTCAAAGCTAA

Protein sequence

MSIVKRYAPPSPHVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPLISAGSQS

Homology

[Close]

BLAST of Carg23979 vs. NCBI nr
Match: KAG7020635.1 (Zinc finger CCCH domain-containing protein 20, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 583.6 bits (1503), Expect = 9.4e-163
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0


Query: 1   MSIVKRYAPPSPHVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCA 60
           MSIVKRYAPPSPHVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCA
Sbjct: 1   MSIVKRYAPPSPHVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCA 60

Query: 61  RGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLH 120
           RGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLH
Sbjct: 61  RGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLH 120

Query: 121 PDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISP 180
           PDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISP
Sbjct: 121 PDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISP 180

Query: 181 DSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTF 240
           DSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTF
Sbjct: 181 DSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTF 240

Query: 241 EEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPLISAGSQS 283
           EEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPLISAGSQS
Sbjct: 241 EEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPLISAGSQS 282

[Close]

BLAST of Carg23979 vs. NCBI nr
Match: XP_022951066.1 (zinc finger CCCH domain-containing protein 20-like [Cucurbita moschata])

HSP 1 Score: 553.5 bits (1425), Expect = 1.0e-153
Identity = 266/270 (98.52%), Postives = 269/270 (99.63%), Query Frame = 0


Query: 13  HVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPY 72
           HVSPLDSPTRAVMEFDSSFWEEQ+LPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPY
Sbjct: 36  HVSPLDSPTRAVMEFDSSFWEEQELPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPY 95

Query: 73  AHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCRDG 132
           AHVGEKARRRDPRKF+YSGTECPALRHGCCKKGDACEFAHGTFE WLHPDRYRTQPCRDG
Sbjct: 96  AHVGEKARRRDPRKFNYSGTECPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDG 155

Query: 133 IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVT 192
           IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIA+AVTSPTSILISPDSPPMSPISPVT
Sbjct: 156 IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIASAVTSPTSILISPDSPPMSPISPVT 215

Query: 193 TGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESG 252
           TGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESG
Sbjct: 216 TGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESG 275

Query: 253 RNLRAQMYAKLMRENSVDRIRPLISAGSQS 283
           RNLRAQMYAKLMRENSVDRIRPLISAGSQS
Sbjct: 276 RNLRAQMYAKLMRENSVDRIRPLISAGSQS 305

[Close]

BLAST of Carg23979 vs. NCBI nr
Match: KAG6585728.1 (Zinc finger CCCH domain-containing protein 20, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 551.6 bits (1420), Expect = 3.9e-153
Identity = 269/274 (98.18%), Postives = 269/274 (98.18%), Query Frame = 0


Query: 13  HVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPY 72
           HVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPY
Sbjct: 40  HVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPY 99

Query: 73  AHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCRDG 132
           AHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFE WLHPDRYRTQPCRDG
Sbjct: 100 AHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDG 159

Query: 133 IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVT 192
           IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVT
Sbjct: 160 IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVT 219

Query: 193 TGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESG 252
           TGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESG
Sbjct: 220 TGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESG 279

Query: 253 RNLRAQMYAKLMRENSVD----RIRPLISAGSQS 283
           RNLRAQMYAKLMRENSVD    RIRPLISAGSQS
Sbjct: 280 RNLRAQMYAKLMRENSVDRIRPRIRPLISAGSQS 313

[Close]

BLAST of Carg23979 vs. NCBI nr
Match: XP_023537964.1 (zinc finger CCCH domain-containing protein 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 547.0 bits (1408), Expect = 9.7e-152
Identity = 263/270 (97.41%), Postives = 265/270 (98.15%), Query Frame = 0


Query: 13  HVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPY 72
           HVSPLDSPTRAVMEFDSSFWEEQD+PAAVDAFTCDDFRMYEFKVRSC RGRSHDWTKCP 
Sbjct: 40  HVSPLDSPTRAVMEFDSSFWEEQDMPAAVDAFTCDDFRMYEFKVRSCTRGRSHDWTKCPN 99

Query: 73  AHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCRDG 132
           AH GEKARRRDPRKF+YSGTECPALRHGCC KGDACEFAHGTFE WLHPDRYRTQPCRDG
Sbjct: 100 AHAGEKARRRDPRKFNYSGTECPALRHGCCNKGDACEFAHGTFEIWLHPDRYRTQPCRDG 159

Query: 133 IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVT 192
           IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVT
Sbjct: 160 IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVT 219

Query: 193 TGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESG 252
           TGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESG
Sbjct: 220 TGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESG 279

Query: 253 RNLRAQMYAKLMRENSVDRIRPLISAGSQS 283
           RNLRAQMYAKLMRENSVDRIRPLISAGSQS
Sbjct: 280 RNLRAQMYAKLMRENSVDRIRPLISAGSQS 309

[Close]

BLAST of Carg23979 vs. NCBI nr
Match: XP_023002826.1 (zinc finger CCCH domain-containing protein 20-like [Cucurbita maxima])

HSP 1 Score: 544.3 bits (1401), Expect = 6.3e-151
Identity = 264/272 (97.06%), Postives = 265/272 (97.43%), Query Frame = 0


Query: 11  SPHVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKC 70
           S HVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKC
Sbjct: 37  SGHVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKC 96

Query: 71  PYAHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCR 130
           PYAH GEKARRRDPRKF+YSGTECPALRHGCCKKGDACEFAHGTFE WLHPDRYRTQPCR
Sbjct: 97  PYAHAGEKARRRDPRKFNYSGTECPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCR 156

Query: 131 DGIACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISP 190
           DGIACRRRVCFFAHTLEQLRIPAKQSLMSPRA KEI AAVTSPTSILISPDSPPMSPISP
Sbjct: 157 DGIACRRRVCFFAHTLEQLRIPAKQSLMSPRAGKEIDAAVTSPTSILISPDSPPMSPISP 216

Query: 191 VTTGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVE 250
           VTTGGESFSRLVPLMHNLQLDKSKK PAVSGF SSPRRNSGGFDLWDRTFEEEPAMERVE
Sbjct: 217 VTTGGESFSRLVPLMHNLQLDKSKKIPAVSGFVSSPRRNSGGFDLWDRTFEEEPAMERVE 276

Query: 251 SGRNLRAQMYAKLMRENSVDRIRPLISAGSQS 283
           SGRNLRAQMYAKLMRENSVDRIRPLISAGSQS
Sbjct: 277 SGRNLRAQMYAKLMRENSVDRIRPLISAGSQS 308

[Close]

BLAST of Carg23979 vs. ExPASy Swiss-Prot
Match: O82199 (Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=At2g19810 PE=2 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.8e-68
Identity = 138/269 (51.30%), Postives = 167/269 (62.08%), Query Frame = 0


Query: 41  VDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTECPALRHG 100
           +DA+TCD FRMYEFKVR CARGRSHDWT+CPYAH GEKARRRDPRKF YSGT CP  R G
Sbjct: 71  IDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKG 130

Query: 101 CCKKGDACEFAHGTFESWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLMSP 160
           CCK+GDACEF+HG FE WLHP RYRTQPC+DG  CRRRVCFFAH+ +Q+R+   QS    
Sbjct: 131 CCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIRVLPNQSPDRV 190

Query: 161 RAAKEIAAAVTSPTSILISP--DSPPMSPISPVTTGGESFSR---------LVPLMHNLQ 220
            +   ++  +       ISP  +SPP+SP     +     SR         +V  + NLQ
Sbjct: 191 DSFDVLSPTIRRAFQFSISPSSNSPPVSPRGDSDSSCSLLSRSLGSNLGNDVVASLRNLQ 250

Query: 221 LDKSKK------NPAVSGFDS---SPR---------------RNSGGFDLWDRTFEEEPA 275
           L+K K       N  + G+ S   SPR                  G  ++W+   EEEPA
Sbjct: 251 LNKVKSSLSSSYNNQIGGYGSGFGSPRGSVLGPGFRSLPTTPTRPGFMNIWENGLEEEPA 310

[Close]

BLAST of Carg23979 vs. ExPASy Swiss-Prot
Match: O82307 (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 6.7e-63
Identity = 136/275 (49.45%), Postives = 169/275 (61.45%), Query Frame = 0


Query: 10  PSPHVSPLDSPTRAV----MEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSH 69
           PSP++    S  R +    +  DS      +     D+F+ D+FR+YEFK+R CARGRSH
Sbjct: 48  PSPYLDSFASLFRYLPSNELTNDSDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSH 107

Query: 70  DWTKCPYAHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYR 129
           DWT+CP+AH GEKARRRDPRKF YSGT CP  R G C++GD+CEF+HG FE WLHP RYR
Sbjct: 108 DWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYR 167

Query: 130 TQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPM 189
           TQPC+DG +CRRR+CFFAHT EQLR+      + P      +   TSPTSIL+SP   P 
Sbjct: 168 TQPCKDGTSCRRRICFFAHTTEQLRV--LPCSLDPDLG-FFSGLATSPTSILVSPSFSPP 227

Query: 190 SPISPVTTGGESFSRLVPLMHNLQLDK---SKKNPAVSG----FDSSPRRNSGGFDLWDR 249
           S   P++    S   L+  M  +QL+    S  +P  S     F SS R        W R
Sbjct: 228 SESPPLS---PSTGELIASMRKMQLNGGGCSWSSPMRSAVRLPFSSSLRPIQAA--TWPR 287

Query: 250 ----TFEEEPAMERVESGRNLRAQMYAKLMRENSV 270
                 EE PAME VESG+ LRA+MYA+L RENS+
Sbjct: 288 IREFEIEEAPAMEFVESGKELRAEMYARLSRENSL 314

[Close]

BLAST of Carg23979 vs. ExPASy Swiss-Prot
Match: Q9M0G2 (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN=At4g29190 PE=2 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.1e-62
Identity = 135/269 (50.19%), Postives = 163/269 (60.59%), Query Frame = 0


Query: 41  VDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTECPALRHG 100
           +DA++CD FRMY+FKVR CARGRSHDWT+CPYAH GEKARRRDPRK+ YSGT CP  R G
Sbjct: 72  IDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKG 131

Query: 101 CCKKGDACEFAHGTFESWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQS---- 160
            CKKGD+CEFAHG FE WLHP RYRTQPC+DG  C R++CFFAH+ +QLR    +S    
Sbjct: 132 GCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLRFLHTRSPDRV 191

Query: 161 ----LMSPRAAKEIAAAVTSPTSILISPDSPPMSP-----ISPVT------TGGESFSRL 220
               + SP  A+    ++ SP S      SPPMSP      SP+T       G  S + +
Sbjct: 192 DSFDVSSPIRARAFQLSI-SPVS-----GSPPMSPRADSESSPMTQSLSRSLGSCSINDV 251

Query: 221 VPLMHNLQLDKSKKNPAVS---------------GFDSSPR--RNSGGFDLWDRTFEEEP 273
           VP   NLQ +  K  P  +               GF S P      G  D+W+   EEEP
Sbjct: 252 VPSFRNLQFNSVKSFPRNNPLFGFGSPRGSILGPGFQSLPTTPTRPGNLDIWEYGLEEEP 311

[Close]

BLAST of Carg23979 vs. ExPASy Swiss-Prot
Match: Q9FU27 (Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0192000 PE=2 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.0e-58
Identity = 133/303 (43.89%), Postives = 174/303 (57.43%), Query Frame = 0


Query: 33  EEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGT 92
           E   + AAVDA+ CD+FRMYEFKVR CARGRSHDWT+CP+AH GEKARRRDPRK+ YSGT
Sbjct: 61  EAAAMAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRKYHYSGT 120

Query: 93  ECPALRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRI- 152
            CP  R G CK+GDACE+AHG FE WLHP RYRTQPC+DG ACRRRVCFFAHT +QLR+ 
Sbjct: 121 ACPDFRKGGCKRGDACEYAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVL 180

Query: 153 PAKQSLMSPRAAKEIAAAV--------------------TSPTSILISP------DSPPM 212
           PA+QS     A+  +A +                     +SPTS L+SP      +SPP+
Sbjct: 181 PAQQSSPRSVASSPLAESYDGSPLRRQAFESYLTKTIMSSSPTSTLMSPPKSPPSESPPL 240

Query: 213 SP--ISPVTTG-----GESFSRLVPLMHNLQLDKSKKN-------PAVSGFDSSPRRNSG 270
           SP   + +  G     G   + ++     L+L+K K +       P+ S    SP+  +G
Sbjct: 241 SPDGAAAIRRGSWPGVGSPVNDVLASFRQLRLNKVKSSPSGGWSYPSSSAVYGSPKAATG 300

[Close]

BLAST of Carg23979 vs. ExPASy Swiss-Prot
Match: Q6L4N4 (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.2e-56
Identity = 139/330 (42.12%), Postives = 171/330 (51.82%), Query Frame = 0


Query: 33  EEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGT 92
           E   + AAVDA+ CD+FRMYEFKVR CARGRSHDWT+CP+AH GEKARRRDPR++ YSGT
Sbjct: 62  EAAAVAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGT 121

Query: 93  ECPALRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRI- 152
            CP  R G CK+GDACEFAHG FE WLHP RYRTQPC+DG ACRRRVCFFAHT +QLR+ 
Sbjct: 122 ACPDFRKGGCKRGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVL 181

Query: 153 --PAKQSLMSPR---------AAKEIAAAV--------------------TSPTSILISP 212
               +Q   SPR         AA  +A +                     +SPTS L+SP
Sbjct: 182 PPSQQQGSNSPRGCGGGGAGAAASPLAESYDGSPLRRQAFESYLTKSIMSSSPTSTLVSP 241

Query: 213 DSPPMS---PISPVTTG----------GESFSRLVPLMHNLQLDKSKKNPAVSGF----- 272
              P S   P+SP   G          G   + +   +  L+L   +  P+ + F     
Sbjct: 242 PRSPPSESPPLSPDAAGALRRGAWAGVGSPVNDVHVSLRQLRLGSPRSAPSCASFLPAGY 301

Query: 273 -------------------DSSPRRNS--------------GGFDLWDRTFEEEPAMERV 280
                               S+P R S                 DL     EEE  MERV
Sbjct: 302 QYGSPKSPAAAAAAALYSLPSTPTRLSPVTVTTASGATVTVEPLDL--GLIEEEQPMERV 361

[Close]

BLAST of Carg23979 vs. ExPASy TrEMBL
Match: A0A6J1GGI4 (zinc finger CCCH domain-containing protein 20-like OS=Cucurbita moschata OX=3662 GN=LOC111454027 PE=4 SV=1)

HSP 1 Score: 553.5 bits (1425), Expect = 5.0e-154
Identity = 266/270 (98.52%), Postives = 269/270 (99.63%), Query Frame = 0


Query: 13  HVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPY 72
           HVSPLDSPTRAVMEFDSSFWEEQ+LPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPY
Sbjct: 36  HVSPLDSPTRAVMEFDSSFWEEQELPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPY 95

Query: 73  AHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCRDG 132
           AHVGEKARRRDPRKF+YSGTECPALRHGCCKKGDACEFAHGTFE WLHPDRYRTQPCRDG
Sbjct: 96  AHVGEKARRRDPRKFNYSGTECPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDG 155

Query: 133 IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVT 192
           IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIA+AVTSPTSILISPDSPPMSPISPVT
Sbjct: 156 IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIASAVTSPTSILISPDSPPMSPISPVT 215

Query: 193 TGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESG 252
           TGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESG
Sbjct: 216 TGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESG 275

Query: 253 RNLRAQMYAKLMRENSVDRIRPLISAGSQS 283
           RNLRAQMYAKLMRENSVDRIRPLISAGSQS
Sbjct: 276 RNLRAQMYAKLMRENSVDRIRPLISAGSQS 305

[Close]

BLAST of Carg23979 vs. ExPASy TrEMBL
Match: A0A6J1KMD9 (zinc finger CCCH domain-containing protein 20-like OS=Cucurbita maxima OX=3661 GN=LOC111496573 PE=4 SV=1)

HSP 1 Score: 544.3 bits (1401), Expect = 3.1e-151
Identity = 264/272 (97.06%), Postives = 265/272 (97.43%), Query Frame = 0


Query: 11  SPHVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKC 70
           S HVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKC
Sbjct: 37  SGHVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKC 96

Query: 71  PYAHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCR 130
           PYAH GEKARRRDPRKF+YSGTECPALRHGCCKKGDACEFAHGTFE WLHPDRYRTQPCR
Sbjct: 97  PYAHAGEKARRRDPRKFNYSGTECPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCR 156

Query: 131 DGIACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISP 190
           DGIACRRRVCFFAHTLEQLRIPAKQSLMSPRA KEI AAVTSPTSILISPDSPPMSPISP
Sbjct: 157 DGIACRRRVCFFAHTLEQLRIPAKQSLMSPRAGKEIDAAVTSPTSILISPDSPPMSPISP 216

Query: 191 VTTGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVE 250
           VTTGGESFSRLVPLMHNLQLDKSKK PAVSGF SSPRRNSGGFDLWDRTFEEEPAMERVE
Sbjct: 217 VTTGGESFSRLVPLMHNLQLDKSKKIPAVSGFVSSPRRNSGGFDLWDRTFEEEPAMERVE 276

Query: 251 SGRNLRAQMYAKLMRENSVDRIRPLISAGSQS 283
           SGRNLRAQMYAKLMRENSVDRIRPLISAGSQS
Sbjct: 277 SGRNLRAQMYAKLMRENSVDRIRPLISAGSQS 308

[Close]

BLAST of Carg23979 vs. ExPASy TrEMBL
Match: A0A5A7V5C0 (Zinc finger CCCH domain-containing protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001160 PE=4 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 3.4e-126
Identity = 220/272 (80.88%), Postives = 238/272 (87.50%), Query Frame = 0


Query: 13  HVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPY 72
           HVSPLDSPT A+M+FDSS WE+ DLPA VD F+CD FRMYEFKVRSCARGRSHDWTKCPY
Sbjct: 35  HVSPLDSPTAALMDFDSSLWEDPDLPAPVDGFSCDQFRMYEFKVRSCARGRSHDWTKCPY 94

Query: 73  AHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCRDG 132
           AH GEKARRRDPRKF+YSG ECP LRHGCCKKGDACE+AHGTFE WLHPDRYRTQPCRDG
Sbjct: 95  AHTGEKARRRDPRKFNYSGAECPDLRHGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDG 154

Query: 133 IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISP--DSPPMSPISP 192
             CRRRVCFFAHT EQLRIP KQS+ SPRA +    AV+SPTSIL+SP  DSPP+SPISP
Sbjct: 155 TGCRRRVCFFAHTSEQLRIPGKQSVRSPRAREIAVPAVSSPTSILLSPSSDSPPLSPISP 214

Query: 193 VTTGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVE 252
           V +GGESFSRLV LMH+L+LD+ K NP VS F  + RRNSG FDLWDR  EEEPAMERVE
Sbjct: 215 VISGGESFSRLVALMHSLRLDELKTNPGVSSFSPNLRRNSGAFDLWDRENEEEPAMERVE 274

Query: 253 SGRNLRAQMYAKLMRENSVDRIRPLISAGSQS 283
           SGRNLRAQMYAKLMRENSVDR+RPLISAGSQ+
Sbjct: 275 SGRNLRAQMYAKLMRENSVDRVRPLISAGSQN 306

[Close]

BLAST of Carg23979 vs. ExPASy TrEMBL
Match: A0A1S3BBA7 (LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 20 OS=Cucumis melo OX=3656 GN=LOC103487803 PE=4 SV=1)

HSP 1 Score: 458.4 bits (1178), Expect = 2.2e-125
Identity = 219/272 (80.51%), Postives = 237/272 (87.13%), Query Frame = 0


Query: 13  HVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPY 72
           HVSPLDSPT A+M+FDSS WE+ DLPA VD F+CD FRMYEFKVRSCARGRSHDWTKCPY
Sbjct: 35  HVSPLDSPTAALMDFDSSLWEDPDLPAPVDGFSCDQFRMYEFKVRSCARGRSHDWTKCPY 94

Query: 73  AHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCRDG 132
           AH GEKARRRDPRKF+YSG ECP LRHGCCKKGDACE+AHGTFE WLHPDRYRTQPCRDG
Sbjct: 95  AHTGEKARRRDPRKFNYSGAECPDLRHGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDG 154

Query: 133 IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISP--DSPPMSPISP 192
             CRRRVCFFAHT EQLRIP KQS+ SPRA +    AV+SPTSIL+SP  DSPP+SPISP
Sbjct: 155 TGCRRRVCFFAHTSEQLRIPGKQSVRSPRAREIAVPAVSSPTSILLSPSSDSPPLSPISP 214

Query: 193 VTTGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVE 252
           V +GGES SRLV LMH+L+LD+ K NP VS F  + RRNSG FDLWDR  EEEPAMERVE
Sbjct: 215 VISGGESSSRLVALMHSLRLDEXKTNPGVSSFSPNLRRNSGAFDLWDRENEEEPAMERVE 274

Query: 253 SGRNLRAQMYAKLMRENSVDRIRPLISAGSQS 283
           SGRNLRAQMYAKLMRENSVDR+RPLISAGSQ+
Sbjct: 275 SGRNLRAQMYAKLMRENSVDRVRPLISAGSQN 306

[Close]

BLAST of Carg23979 vs. ExPASy TrEMBL
Match: A0A6J1K790 (zinc finger CCCH domain-containing protein 20-like OS=Cucurbita maxima OX=3661 GN=LOC111492294 PE=4 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 4.2e-124
Identity = 217/272 (79.78%), Postives = 236/272 (86.76%), Query Frame = 0


Query: 13  HVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPY 72
           +VSPLDSPT AVM++DSSFWE+QDLPA VDAFTCD FRMYEFKVR+CARGRSHDWTKCPY
Sbjct: 35  NVSPLDSPTAAVMDYDSSFWEDQDLPAIVDAFTCDHFRMYEFKVRACARGRSHDWTKCPY 94

Query: 73  AHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCRDG 132
           AH GEKARRRDPRKF+YSGTECP LRHGCC KGDACE+AHG FE WLHPDRYRTQPCRDG
Sbjct: 95  AHAGEKARRRDPRKFNYSGTECPDLRHGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDG 154

Query: 133 IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILI--SPDSPPMSPISP 192
             CRRRVCFFAH+ EQLRIP KQS+ SPR  +  A AV+SPTSILI  S DSPPMSPISP
Sbjct: 155 AVCRRRVCFFAHSSEQLRIPGKQSIRSPRGREIAAPAVSSPTSILISSSSDSPPMSPISP 214

Query: 193 VTTGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVE 252
           + TGGESFSRLV LMHNL  D+ K NP +SGF  S RRNSG FD WDR  EEEPAMERVE
Sbjct: 215 LATGGESFSRLVALMHNLHFDELKTNPGISGFGPSFRRNSGAFDSWDRDNEEEPAMERVE 274

Query: 253 SGRNLRAQMYAKLMRENSVDRIRPLISAGSQS 283
           SGRNLRAQMYAKLMR+NSV+R+RPLI AGS++
Sbjct: 275 SGRNLRAQMYAKLMRDNSVERVRPLILAGSRN 306

[Close]

BLAST of Carg23979 vs. TAIR 10
Match: AT2G19810.1 (CCCH-type zinc finger family protein )

HSP 1 Score: 260.8 bits (665), Expect = 1.3e-69
Identity = 138/269 (51.30%), Postives = 167/269 (62.08%), Query Frame = 0


Query: 41  VDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTECPALRHG 100
           +DA+TCD FRMYEFKVR CARGRSHDWT+CPYAH GEKARRRDPRKF YSGT CP  R G
Sbjct: 71  IDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKG 130

Query: 101 CCKKGDACEFAHGTFESWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLMSP 160
           CCK+GDACEF+HG FE WLHP RYRTQPC+DG  CRRRVCFFAH+ +Q+R+   QS    
Sbjct: 131 CCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIRVLPNQSPDRV 190

Query: 161 RAAKEIAAAVTSPTSILISP--DSPPMSPISPVTTGGESFSR---------LVPLMHNLQ 220
            +   ++  +       ISP  +SPP+SP     +     SR         +V  + NLQ
Sbjct: 191 DSFDVLSPTIRRAFQFSISPSSNSPPVSPRGDSDSSCSLLSRSLGSNLGNDVVASLRNLQ 250

Query: 221 LDKSKK------NPAVSGFDS---SPR---------------RNSGGFDLWDRTFEEEPA 275
           L+K K       N  + G+ S   SPR                  G  ++W+   EEEPA
Sbjct: 251 LNKVKSSLSSSYNNQIGGYGSGFGSPRGSVLGPGFRSLPTTPTRPGFMNIWENGLEEEPA 310

[Close]

BLAST of Carg23979 vs. TAIR 10
Match: AT2G25900.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 242.3 bits (617), Expect = 4.8e-64
Identity = 136/275 (49.45%), Postives = 169/275 (61.45%), Query Frame = 0


Query: 10  PSPHVSPLDSPTRAV----MEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSH 69
           PSP++    S  R +    +  DS      +     D+F+ D+FR+YEFK+R CARGRSH
Sbjct: 48  PSPYLDSFASLFRYLPSNELTNDSDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSH 107

Query: 70  DWTKCPYAHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYR 129
           DWT+CP+AH GEKARRRDPRKF YSGT CP  R G C++GD+CEF+HG FE WLHP RYR
Sbjct: 108 DWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYR 167

Query: 130 TQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPM 189
           TQPC+DG +CRRR+CFFAHT EQLR+      + P      +   TSPTSIL+SP   P 
Sbjct: 168 TQPCKDGTSCRRRICFFAHTTEQLRV--LPCSLDPDLG-FFSGLATSPTSILVSPSFSPP 227

Query: 190 SPISPVTTGGESFSRLVPLMHNLQLDK---SKKNPAVSG----FDSSPRRNSGGFDLWDR 249
           S   P++    S   L+  M  +QL+    S  +P  S     F SS R        W R
Sbjct: 228 SESPPLS---PSTGELIASMRKMQLNGGGCSWSSPMRSAVRLPFSSSLRPIQAA--TWPR 287

Query: 250 ----TFEEEPAMERVESGRNLRAQMYAKLMRENSV 270
                 EE PAME VESG+ LRA+MYA+L RENS+
Sbjct: 288 IREFEIEEAPAMEFVESGKELRAEMYARLSRENSL 314

[Close]

BLAST of Carg23979 vs. TAIR 10
Match: AT2G25900.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 242.3 bits (617), Expect = 4.8e-64
Identity = 136/275 (49.45%), Postives = 169/275 (61.45%), Query Frame = 0


Query: 10  PSPHVSPLDSPTRAV----MEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSH 69
           PSP++    S  R +    +  DS      +     D+F+ D+FR+YEFK+R CARGRSH
Sbjct: 48  PSPYLDSFASLFRYLPSNELTNDSDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSH 107

Query: 70  DWTKCPYAHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYR 129
           DWT+CP+AH GEKARRRDPRKF YSGT CP  R G C++GD+CEF+HG FE WLHP RYR
Sbjct: 108 DWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYR 167

Query: 130 TQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPM 189
           TQPC+DG +CRRR+CFFAHT EQLR+      + P      +   TSPTSIL+SP   P 
Sbjct: 168 TQPCKDGTSCRRRICFFAHTTEQLRV--LPCSLDPDLG-FFSGLATSPTSILVSPSFSPP 227

Query: 190 SPISPVTTGGESFSRLVPLMHNLQLDK---SKKNPAVSG----FDSSPRRNSGGFDLWDR 249
           S   P++    S   L+  M  +QL+    S  +P  S     F SS R        W R
Sbjct: 228 SESPPLS---PSTGELIASMRKMQLNGGGCSWSSPMRSAVRLPFSSSLRPIQAA--TWPR 287

Query: 250 ----TFEEEPAMERVESGRNLRAQMYAKLMRENSV 270
                 EE PAME VESG+ LRA+MYA+L RENS+
Sbjct: 288 IREFEIEEAPAMEFVESGKELRAEMYARLSRENSL 314

[Close]

BLAST of Carg23979 vs. TAIR 10
Match: AT4G29190.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 241.5 bits (615), Expect = 8.1e-64
Identity = 135/269 (50.19%), Postives = 163/269 (60.59%), Query Frame = 0


Query: 41  VDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTECPALRHG 100
           +DA++CD FRMY+FKVR CARGRSHDWT+CPYAH GEKARRRDPRK+ YSGT CP  R G
Sbjct: 72  IDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKG 131

Query: 101 CCKKGDACEFAHGTFESWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQS---- 160
            CKKGD+CEFAHG FE WLHP RYRTQPC+DG  C R++CFFAH+ +QLR    +S    
Sbjct: 132 GCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLRFLHTRSPDRV 191

Query: 161 ----LMSPRAAKEIAAAVTSPTSILISPDSPPMSP-----ISPVT------TGGESFSRL 220
               + SP  A+    ++ SP S      SPPMSP      SP+T       G  S + +
Sbjct: 192 DSFDVSSPIRARAFQLSI-SPVS-----GSPPMSPRADSESSPMTQSLSRSLGSCSINDV 251

Query: 221 VPLMHNLQLDKSKKNPAVS---------------GFDSSPR--RNSGGFDLWDRTFEEEP 273
           VP   NLQ +  K  P  +               GF S P      G  D+W+   EEEP
Sbjct: 252 VPSFRNLQFNSVKSFPRNNPLFGFGSPRGSILGPGFQSLPTTPTRPGNLDIWEYGLEEEP 311

[Close]

BLAST of Carg23979 vs. TAIR 10
Match: AT2G41900.1 (CCCH-type zinc finger protein with ARM repeat domain )

HSP 1 Score: 183.0 bits (463), Expect = 3.4e-46
Identity = 102/222 (45.95%), Postives = 132/222 (59.46%), Query Frame = 0


Query: 15  SPLDSPTR-AVMEFDSSFWEEQDLPAAVDA-FTCDDFRMYEFKVRSCARGRSHDWTKCPY 74
           SPL SP +    EF   +  +  LP   ++ +  D+FRMY FKVR C+R  SHDWT+CP+
Sbjct: 226 SPLGSPFKLKSTEFKKEYPVDPSLPDIKNSIYATDEFRMYSFKVRPCSRAYSHDWTECPF 285

Query: 75  AHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCRDG 134
            H GE ARRRDPRKF YS   CP  R G C++GD CE+AHG FE WLHP +YRT+ C+DG
Sbjct: 286 VHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDG 345

Query: 135 IACRRRVCFFAHTLEQLR---IPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPP----M 194
             C RRVCFFAHT E+LR        ++ SPR+  + AAA++      + P SP     M
Sbjct: 346 TGCARRVCFFAHTPEELRPLYASTGSAVPSPRSNADYAAALS------LLPGSPSGVSVM 405

Query: 195 SPISPVTTG-GESFSRL------VPLMH----NLQLDKSKKN 217
           SP+SP   G G S S +      VP +H    NLQ  + + +
Sbjct: 406 SPLSPSAAGNGMSHSNMAWPQPNVPALHLPGSNLQSSRLRSS 441

The following BLAST results are available for this feature:

BLAST of Carg23979 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020635.1	9.4e-163	100.00	Zinc finger CCCH domain-containing protein 20, partial [Cucurbita argyrosperma s...	[more]
XP_022951066.1	1.0e-153	98.52	zinc finger CCCH domain-containing protein 20-like [Cucurbita moschata]	[more]
KAG6585728.1	3.9e-153	98.18	Zinc finger CCCH domain-containing protein 20, partial [Cucurbita argyrosperma s...	[more]
XP_023537964.1	9.7e-152	97.41	zinc finger CCCH domain-containing protein 20-like [Cucurbita pepo subsp. pepo]	[more]
XP_023002826.1	6.3e-151	97.06	zinc finger CCCH domain-containing protein 20-like [Cucurbita maxima]	[more]

BLAST of Carg23979 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82199	1.8e-68	51.30	Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN...	[more]
O82307	6.7e-63	49.45	Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9M0G2	1.1e-62	50.19	Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9FU27	1.0e-58	43.89	Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=...	[more]
Q6L4N4	1.2e-56	42.12	Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of Carg23979 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GGI4	5.0e-154	98.52	zinc finger CCCH domain-containing protein 20-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1KMD9	3.1e-151	97.06	zinc finger CCCH domain-containing protein 20-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A5A7V5C0	3.4e-126	80.88	Zinc finger CCCH domain-containing protein 20 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3BBA7	2.2e-125	80.51	LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 20 OS=Cucumis me...	[more]
A0A6J1K790	4.2e-124	79.78	zinc finger CCCH domain-containing protein 20-like OS=Cucurbita maxima OX=3661 G...	[more]

BLAST of Carg23979 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19810.1	1.3e-69	51.30	CCCH-type zinc finger family protein	[more]
AT2G25900.1	4.8e-64	49.45	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G25900.2	4.8e-64	49.45	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT4G29190.1	8.1e-64	50.19	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G41900.1	3.4e-46	45.95	CCCH-type zinc finger protein with ARM repeat domain	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 88..114 e-value: 0.099 score: 21.7 coord: 123..146 e-value: 9.0 score: 8.6
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 88..115 score: 11.47874
None	No IPR available	GENE3D	4.10.1000.10		coord: 86..157 e-value: 9.7E-7 score: 30.5
None	No IPR available	PANTHER	PTHR14493	UNKEMPT FAMILY MEMBER	coord: 29..278
None	No IPR available	PANTHER	PTHR14493:SF116	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20	coord: 29..278

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23979-RA	Carg23979-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0061157	mRNA destabilization
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003727	single-stranded RNA binding