Carg23952 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg23952
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr12: 3948728 .. 3949560 (-)
RNA-Seq ExpressionCarg23952
SyntenyCarg23952
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCATAATCAGCTCCGTTTGATTCGGTCAACGGTGAACTGGAAGCCACGTGGAGAATTCTTATTGGTGAATCTACCGAAAGGCTGATTGTACCTGATTCTCCAACGCATCACGTTTCCGAAATGGAAGATGAAAGACATAAAGAAAAAAACACATTTTAAAAATCCCATTAGAAGCGCCTTGAAGGAACAAACCAATCCAGATTTCTGAGGAGCGGAGAGGAGAGGAGTCGAGAGGGAGGCCCACGACGGAGTAGACGGGGGATCCGGCGGTTCCGCGAGGAAAGATTCCCTTTCCGTTGCGGTTGTCGAGAACGGTTTCGTTTTGTCTTTTTCACTAAGCTTTCGACAACGAACTGCGATTACTACTGCCTTTCTCCCGTCTCCACTCCGTTAAATCACGAGTACGTTTTTTTCTTTTCTTAATCTTTTGTTTGATTCTCTATTTTCGATGAATTTTCTTGTTTAGATAGGTTCTTTGGGGATTAGGTATTTTGTAGTTTTCGATTTAGAACTCTCTCTTGGAATTGGGGTTTTGATTTCATCGAAATCTGAATTGGTGGTTGAAGCGGATACTTGTTTTGATGGGATTTGTTGTGTTTGAGTTGTTATTTAATATTACGGTGATCAAATTCTGATGGGAGATCGGTATCTCTTTGATAGATTGATGGGGGCATTGTTATAATTGAAGGGTTTGGAATATATTTCGTCTGCAGGCTGAGCCTCATTGTTCCTGTGGATGTATCTTGTCGTCATTCAAGAAGAAGATCGGCTTGTGAATTTGCCCAAATCCTTTCTGGGTATTCTCAGGCCGCCTTGTCTGTCTGTTAA

mRNA sequence

ATGAACCATAATCAGCTCCGTTTGATTCGGTCAACGGTGAACTGGAAGCCACGTGGAGAATTCTTATTGAAGCGCCTTGAAGGAACAAACCAATCCAGATTTCTGAGGAGCGGAGAGGAGAGGAGTCGAGAGGGAGGCCCACGACGGAGTAGACGGGGGATCCGGCGGTTCCGCGAGGAAAGATTCCCTTTCCGTTGCGGTTGTCGAGAACGGTTTCGTTTTGTCTTTTTCACTAAGCTTTCGACAACGAACTGCGATTACTACTGCCTTTCTCCCGTCTCCACTCCGTTAAATCACGAGCTGAGCCTCATTGTTCCTGTGGATGTATCTTGTCGTCATTCAAGAAGAAGATCGGCTTGTGAATTTGCCCAAATCCTTTCTGGGTATTCTCAGGCCGCCTTGTCTGTCTGTTAA

Coding sequence (CDS)

ATGAACCATAATCAGCTCCGTTTGATTCGGTCAACGGTGAACTGGAAGCCACGTGGAGAATTCTTATTGAAGCGCCTTGAAGGAACAAACCAATCCAGATTTCTGAGGAGCGGAGAGGAGAGGAGTCGAGAGGGAGGCCCACGACGGAGTAGACGGGGGATCCGGCGGTTCCGCGAGGAAAGATTCCCTTTCCGTTGCGGTTGTCGAGAACGGTTTCGTTTTGTCTTTTTCACTAAGCTTTCGACAACGAACTGCGATTACTACTGCCTTTCTCCCGTCTCCACTCCGTTAAATCACGAGCTGAGCCTCATTGTTCCTGTGGATGTATCTTGTCGTCATTCAAGAAGAAGATCGGCTTGTGAATTTGCCCAAATCCTTTCTGGGTATTCTCAGGCCGCCTTGTCTGTCTGTTAA

Protein sequence

MNHNQLRLIRSTVNWKPRGEFLLKRLEGTNQSRFLRSGEERSREGGPRRSRRGIRRFREERFPFRCGCRERFRFVFFTKLSTTNCDYYCLSPVSTPLNHELSLIVPVDVSCRHSRRRSACEFAQILSGYSQAALSVC
Homology
[Close]
BLAST of Carg23952 vs. NCBI nr
Match: KAG6585750.1 (hypothetical protein SDJN03_18483, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020661.1 hypothetical protein SDJN02_17347, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 276.6 bits (706), Expect = 1.2e-70
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 

Query: 1   MNHNQLRLIRSTVNWKPRGEFLLKRLEGTNQSRFLRSGEERSREGGPRRSRRGIRRFREE 60
           MNHNQLRLIRSTVNWKPRGEFLLKRLEGTNQSRFLRSGEERSREGGPRRSRRGIRRFREE
Sbjct: 1   MNHNQLRLIRSTVNWKPRGEFLLKRLEGTNQSRFLRSGEERSREGGPRRSRRGIRRFREE 60

Query: 61  RFPFRCGCRERFRFVFFTKLSTTNCDYYCLSPVSTPLNHELSLIVPVDVSCRHSRRRSAC 120
           RFPFRCGCRERFRFVFFTKLSTTNCDYYCLSPVSTPLNHELSLIVPVDVSCRHSRRRSAC
Sbjct: 61  RFPFRCGCRERFRFVFFTKLSTTNCDYYCLSPVSTPLNHELSLIVPVDVSCRHSRRRSAC 120

Query: 121 EFAQILSGYSQAALSVC 138
           EFAQILSGYSQAALSVC
Sbjct: 121 EFAQILSGYSQAALSVC 137

[Close]
BLAST of Carg23952 vs. NCBI nr
Match: KGN62379.1 (hypothetical protein Csa_018717 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 4.3e-12
Identity = 59/118 (50.00%), Postives = 69/118 (58.47%), Query Frame = 0 

Query: 24  KRLEGTNQSRFLRSGEERSREGGPRRSRRGIRRFREERFPFRCGCRERFRFVFFTKL--- 83
           KR+E TNQSRF R  EE    G       G+   ++   P  CG  ERF  ++   L   
Sbjct: 50  KRIERTNQSRFKR--EEDPERGDGVDGGFGVAARKDFLSP--CGEEERFLIIYMVVLLRF 109

Query: 84  --STTNCDYYCLSPVSTPLNHELSLIVPVDVSCRHSRRRSACEFAQILSGYSQAALSV 137
              T  C     SPV+   NHELS IVPVDVSCR SRRR ACEFA+IL+GYSQAALS+
Sbjct: 110 SQGTAICT--APSPVTIQSNHELSFIVPVDVSCRLSRRRLACEFARILTGYSQAALSI 161

[Close]
BLAST of Carg23952 vs. ExPASy TrEMBL
Match: A0A0A0LN05 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351600 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.1e-12
Identity = 59/118 (50.00%), Postives = 69/118 (58.47%), Query Frame = 0 

Query: 24  KRLEGTNQSRFLRSGEERSREGGPRRSRRGIRRFREERFPFRCGCRERFRFVFFTKL--- 83
           KR+E TNQSRF R  EE    G       G+   ++   P  CG  ERF  ++   L   
Sbjct: 50  KRIERTNQSRFKR--EEDPERGDGVDGGFGVAARKDFLSP--CGEEERFLIIYMVVLLRF 109

Query: 84  --STTNCDYYCLSPVSTPLNHELSLIVPVDVSCRHSRRRSACEFAQILSGYSQAALSV 137
              T  C     SPV+   NHELS IVPVDVSCR SRRR ACEFA+IL+GYSQAALS+
Sbjct: 110 SQGTAICT--APSPVTIQSNHELSFIVPVDVSCRLSRRRLACEFARILTGYSQAALSI 161

The following BLAST results are available for this feature:
BLAST of Carg23952 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6585750.11.2e-70100.00hypothetical protein SDJN03_18483, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN62379.14.3e-1250.00hypothetical protein Csa_018717 [Cucumis sativus][more]
BLAST of Carg23952 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg23952 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LN052.1e-1250.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351600 PE=4 SV=1[more]
BLAST of Carg23952 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg23952-RACarg23952-RAmRNA