Carg23949 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg23949
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	leucine-rich repeat extensin-like protein 3
Location	Carg_Chr12: 3957063 .. 3957596 (-)
RNA-Seq Expression	Carg23949
Synteny	Carg23949

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACATTCCACTACAACCACCCTCTTCTTCATTCTTTTGATCGTCCACCTCGCCGGAGCCGCCATGCCCTCCGACAACCACCGTCTCGTCGAGGTAGTGCCTCCGGTAAGCCTCCTCTGTATCAGCGAATGCTCAACTTGCCCTGTCATATGCGCACCCCCACCACCGCCCACGGTGACACTCAAGTCTCCTCCACCGGTGCCTCACTCCCCTCCGATGGCTTCCTTCCCACTCAACCCACCCCCATCCCCACCTCGACCAACCCCATCACCACCGCCGCCTCCAGTGCCGGTGGCAGCTTCATCTCATTCCCCACCGCCTCCCGCTTACAAATACTATTTCAGCTTGCCACCACCGCCGCCAGTGCTGATCCCGGAGCCTCTGCCGCCGACGACGGCGGCGCCTCATGGAAATACCAATGCTTATAATTACTACTTCTACGCTTCGAATTCATGTTCTCTGAATTCTCCGGCGTTTTTGTGGGCTCTGTTTCTCTTCCATTTGGTGCGTGTCTTGGTGGTGGTGAAGTGA

mRNA sequence

ATGGAACATTCCACTACAACCACCCTCTTCTTCATTCTTTTGATCGTCCACCTCGCCGGAGCCGCCATGCCCTCCGACAACCACCGTCTCGTCGAGGTAGTGCCTCCGGTAAGCCTCCTCTGTATCAGCGAATGCTCAACTTGCCCTGTCATATGCGCACCCCCACCACCGCCCACGGTGACACTCAAGTCTCCTCCACCGGTGCCTCACTCCCCTCCGATGGCTTCCTTCCCACTCAACCCACCCCCATCCCCACCTCGACCAACCCCATCACCACCGCCGCCTCCAGTGCCGGTGGCAGCTTCATCTCATTCCCCACCGCCTCCCGCTTACAAATACTATTTCAGCTTGCCACCACCGCCGCCAGTGCTGATCCCGGAGCCTCTGCCGCCGACGACGGCGGCGCCTCATGGAAATACCAATGCTTATAATTACTACTTCTACGCTTCGAATTCATGTTCTCTGAATTCTCCGGCGTTTTTGTGGGCTCTGTTTCTCTTCCATTTGGTGCGTGTCTTGGTGGTGGTGAAGTGA

Coding sequence (CDS)

ATGGAACATTCCACTACAACCACCCTCTTCTTCATTCTTTTGATCGTCCACCTCGCCGGAGCCGCCATGCCCTCCGACAACCACCGTCTCGTCGAGGTAGTGCCTCCGGTAAGCCTCCTCTGTATCAGCGAATGCTCAACTTGCCCTGTCATATGCGCACCCCCACCACCGCCCACGGTGACACTCAAGTCTCCTCCACCGGTGCCTCACTCCCCTCCGATGGCTTCCTTCCCACTCAACCCACCCCCATCCCCACCTCGACCAACCCCATCACCACCGCCGCCTCCAGTGCCGGTGGCAGCTTCATCTCATTCCCCACCGCCTCCCGCTTACAAATACTATTTCAGCTTGCCACCACCGCCGCCAGTGCTGATCCCGGAGCCTCTGCCGCCGACGACGGCGGCGCCTCATGGAAATACCAATGCTTATAATTACTACTTCTACGCTTCGAATTCATGTTCTCTGAATTCTCCGGCGTTTTTGTGGGCTCTGTTTCTCTTCCATTTGGTGCGTGTCTTGGTGGTGGTGAAGTGA

Protein sequence

MEHSTTTTLFFILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPVAASSHSPPPPAYKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLVRVLVVVK

Homology

[Close]

BLAST of Carg23949 vs. NCBI nr
Match: KAG7020664.1 (hypothetical protein SDJN02_17350, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 334.7 bits (857), Expect = 4.8e-88
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MEHSTTTTLFFILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTV 60
           MEHSTTTTLFFILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTV
Sbjct: 1   MEHSTTTTLFFILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTV 60

Query: 61  TLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPVAASSHSPPPPAYKYYFSLPPP 120
           TLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPVAASSHSPPPPAYKYYFSLPPP
Sbjct: 61  TLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPVAASSHSPPPPAYKYYFSLPPP 120

Query: 121 PPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLVRVLVVVK 178
           PPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLVRVLVVVK
Sbjct: 121 PPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLVRVLVVVK 177

[Close]

BLAST of Carg23949 vs. NCBI nr
Match: KAG6585753.1 (hypothetical protein SDJN03_18486, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 333.2 bits (853), Expect = 1.4e-87
Identity = 176/177 (99.44%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MEHSTTTTLFFILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTV 60
           MEHSTTTTLFFILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTV
Sbjct: 1   MEHSTTTTLFFILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTV 60

Query: 61  TLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPVAASSHSPPPPAYKYYFSLPPP 120
           TLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPVAASSHSPPPPA+KYYFSLPPP
Sbjct: 61  TLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPVAASSHSPPPPAFKYYFSLPPP 120

Query: 121 PPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLVRVLVVVK 178
           PPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLVRVLVVVK
Sbjct: 121 PPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLVRVLVVVK 177

[Close]

BLAST of Carg23949 vs. NCBI nr
Match: XP_022951103.1 (extensin-3-like [Cucurbita moschata])

HSP 1 Score: 323.9 bits (829), Expect = 8.4e-85
Identity = 172/177 (97.18%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 1   MEHSTTTTLFFILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTV 60
           MEHSTTTTLFFILLIVHLAGAAM SDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTV
Sbjct: 1   MEHSTTTTLFFILLIVHLAGAAMASDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTV 60

Query: 61  TLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPVAASSHSPPPPAYKYYFSLPPP 120
           TLKSPPPVPHSPPMASFPLNPPPSPPRP+PSPPPPPVPVAASSHSPPPPA+KYYFSLPPP
Sbjct: 61  TLKSPPPVPHSPPMASFPLNPPPSPPRPSPSPPPPPVPVAASSHSPPPPAFKYYFSLPPP 120

Query: 121 PPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLVRVLVVVK 178
           PPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSP FLWALFLFHLV VLVVVK
Sbjct: 121 PPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPVFLWALFLFHLVCVLVVVK 177

[Close]

BLAST of Carg23949 vs. NCBI nr
Match: XP_023536686.1 (leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 314.3 bits (804), Expect = 6.7e-82
Identity = 168/177 (94.92%), Postives = 170/177 (96.05%), Query Frame = 0


Query: 1   MEHSTTTTLFFILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTV 60
           MEHSTTTTLFFILLI  LAG AM SD+HRLVEVVPPVSLLCISECSTCPVICAPPPPPTV
Sbjct: 1   MEHSTTTTLFFILLIFPLAGPAMASDDHRLVEVVPPVSLLCISECSTCPVICAPPPPPTV 60

Query: 61  TLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPVAASSHSPPPPAYKYYFSLPPP 120
           TLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVP A SSHSPPPPA+KYYFSLPPP
Sbjct: 61  TLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPAATSSHSPPPPAFKYYFSLPPP 120

Query: 121 PPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLVRVLVVVK 178
           PPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLV VLVVVK
Sbjct: 121 PPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLVCVLVVVK 177

[Close]

BLAST of Carg23949 vs. NCBI nr
Match: XP_023002897.1 (leucine-rich repeat extensin-like protein 3 [Cucurbita maxima])

HSP 1 Score: 273.5 bits (698), Expect = 1.3e-69
Identity = 143/148 (96.62%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 23  MPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPP 82
           M SD+HRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPP
Sbjct: 1   MASDDHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPP 60

Query: 83  PSPPRPTPSPPPPPVPVAASSHSPPPPAYKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNA 142
           PSPPRPTPSPPPPPVP  ASSHSPPPPA+KYYFSLPPPPPVLIPEPLPPTTAAPHGNTNA
Sbjct: 61  PSPPRPTPSPPPPPVPPVASSHSPPPPAFKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNA 120

Query: 143 YNYYFYASNSCSLNSPAFLWALFLFHLV 171
           YNYYFYASNSCSLNSPAFLWALFLFHLV
Sbjct: 121 YNYYFYASNSCSLNSPAFLWALFLFHLV 148

[Close]

BLAST of Carg23949 vs. ExPASy TrEMBL
Match: A0A6J1GGS2 (extensin-3-like OS=Cucurbita moschata OX=3662 GN=LOC111454053 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 4.1e-85
Identity = 172/177 (97.18%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 1   MEHSTTTTLFFILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTV 60
           MEHSTTTTLFFILLIVHLAGAAM SDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTV
Sbjct: 1   MEHSTTTTLFFILLIVHLAGAAMASDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTV 60

Query: 61  TLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPVAASSHSPPPPAYKYYFSLPPP 120
           TLKSPPPVPHSPPMASFPLNPPPSPPRP+PSPPPPPVPVAASSHSPPPPA+KYYFSLPPP
Sbjct: 61  TLKSPPPVPHSPPMASFPLNPPPSPPRPSPSPPPPPVPVAASSHSPPPPAFKYYFSLPPP 120

Query: 121 PPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLVRVLVVVK 178
           PPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSP FLWALFLFHLV VLVVVK
Sbjct: 121 PPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPVFLWALFLFHLVCVLVVVK 177

[Close]

BLAST of Carg23949 vs. ExPASy TrEMBL
Match: A0A6J1KKV8 (leucine-rich repeat extensin-like protein 3 OS=Cucurbita maxima OX=3661 GN=LOC111496636 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 6.3e-70
Identity = 143/148 (96.62%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 23  MPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPP 82
           M SD+HRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPP
Sbjct: 1   MASDDHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPP 60

Query: 83  PSPPRPTPSPPPPPVPVAASSHSPPPPAYKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNA 142
           PSPPRPTPSPPPPPVP  ASSHSPPPPA+KYYFSLPPPPPVLIPEPLPPTTAAPHGNTNA
Sbjct: 61  PSPPRPTPSPPPPPVPPVASSHSPPPPAFKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNA 120

Query: 143 YNYYFYASNSCSLNSPAFLWALFLFHLV 171
           YNYYFYASNSCSLNSPAFLWALFLFHLV
Sbjct: 121 YNYYFYASNSCSLNSPAFLWALFLFHLV 148

[Close]

BLAST of Carg23949 vs. ExPASy TrEMBL
Match: A0A6J1BT26 (leucine-rich repeat extensin-like protein 3 OS=Momordica charantia OX=3673 GN=LOC111005088 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 4.0e-48
Identity = 123/169 (72.78%), Postives = 136/169 (80.47%), Query Frame = 0


Query: 12  ILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHS 71
           ILLI+ LAGAA  S++HRLVEVVPPVSLLCISECSTCPVIC+PPPPPT  LKSPP  PHS
Sbjct: 15  ILLIIDLAGAAAASEDHRLVEVVPPVSLLCISECSTCPVICSPPPPPTAALKSPP--PHS 74

Query: 72  PPMASFPLN--PPPSPPRPTPS-----PPPPPVPVAASSHSPPPPAYKYYFSLPPPPPVL 131
           PP+A  PLN  P PSPPRPTPS     PPPP  P+AA SH PPPPA+ YYF+LPPPPPVL
Sbjct: 75  PPLAYVPLNAPPSPSPPRPTPSPSPPPPPPPSPPLAALSHPPPPPAFNYYFNLPPPPPVL 134

Query: 132 IPEPLPPTTAAPHGNT--NAYNYYFYASNSCSLNSPA-FLWALFLFHLV 171
           IP P+PP TAAPHGNT  NAYNYYFYAS S SL+ PA +L ALF+F  +
Sbjct: 135 IPVPVPPKTAAPHGNTNSNAYNYYFYASKSSSLSLPATWLCALFVFQFM 181

[Close]

BLAST of Carg23949 vs. ExPASy TrEMBL
Match: A0A5A7VEH7 (Classical arabinogalactan protein 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00300 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.4e-45
Identity = 126/185 (68.11%), Postives = 140/185 (75.68%), Query Frame = 0


Query: 1   MEHSTTTTLF---FILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPP 60
           MEH + T  F    ILLI+ LAGAA P D  R+V+VVPPVSLLCISECSTCP ICAPPPP
Sbjct: 1   MEHFSKTLHFSSILILLILPLAGAA-PEDG-RVVQVVPPVSLLCISECSTCPTICAPPPP 60

Query: 61  PTVTLKSPPPVPHSPPMASFPLNPPP-----SPPRPTPSPPPPP-VPVAASSHSPPPPAY 120
           P   LKSPPPVPH PP+A FPLN PP     SPP P+PSPPPPP    A SSHSPPPPA+
Sbjct: 61  PPTVLKSPPPVPHVPPLAYFPLNSPPPRPTSSPPPPSPSPPPPPATATAVSSHSPPPPAF 120

Query: 121 KYYFSLPPPPPVLIPEPLPPT-TAAPHGNT--NAYNYYFY--ASNSCSLNSP-AFLWALF 171
           +YYF+LPPPPPVLIP P+PP+ TAAP GNT  NAYNYYFY  AS+S   + P AF W LF
Sbjct: 121 RYYFNLPPPPPVLIPVPVPPSATAAPRGNTNSNAYNYYFYAPASSSAPPSLPTAFFWGLF 180

[Close]

BLAST of Carg23949 vs. ExPASy TrEMBL
Match: A0A0A0KD44 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G363610 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.1e-42
Identity = 124/187 (66.31%), Postives = 138/187 (73.80%), Query Frame = 0


Query: 1   MEHSTTTTLF---FILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICA--PP 60
           MEH + T  F    ILLI+ LA  A+P D  R+VEVVPPVSLLCISECSTCP ICA  PP
Sbjct: 1   MEHFSKTLHFSSILILLILRLA-RAVPEDG-RVVEVVPPVSLLCISECSTCPTICAPPPP 60

Query: 61  PPPTVTLKSPPPVPHSPPMASFPLNPPP-----SPPRPTPSPPPPP-VPVAASSHSPPPP 120
           PPP + LKSPPPVPH PP+A FPLN PP     SPP P PSPPPPP    A SSHSPPPP
Sbjct: 61  PPPPIVLKSPPPVPHVPPLAYFPLNSPPPRPTSSPPPPWPSPPPPPATATAVSSHSPPPP 120

Query: 121 AYKYYFSLPPPPPVLIPEPLPPT-TAAPHGNT--NAYNYYFY--ASNSCSLNSP-AFLWA 171
           A++YYF+LPPPPPVLIP P+PP+ TA PHGNT  NAYNYYFY  AS+S   + P A  W 
Sbjct: 121 AFRYYFNLPPPPPVLIPVPVPPSATAGPHGNTNSNAYNYYFYAPASSSAPPSLPTALFWG 180

[Close]

BLAST of Carg23949 vs. TAIR 10
Match: AT5G11990.1 (proline-rich family protein )

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-08
Identity = 69/178 (38.76%), Postives = 92/178 (51.69%), Query Frame = 0


Query: 9   LFFILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPV 68
           +  I L++ +  A+ PSD      V+ P   LCISECSTCP IC+PPP       SPPP 
Sbjct: 5   VIIIALVMVMVVASSPSDQ---TNVLTP---LCISECSTCPTICSPPPSKPSPSMSPPPS 64

Query: 69  PHSPPMASFPLNPPP---SPPRPTPSPPPPPVPVAASSHSPPPPAYKYYFSLPPPPPVL- 128
           P S P++S P  PPP   SPP  + S  PPP+        PPPP + Y+ S PPPPP+  
Sbjct: 65  P-SLPLSSSPPPPPPHKHSPPPLSQSLSPPPLITVI---HPPPPRFYYFESTPPPPPLSP 124

Query: 129 ----IPEPLPPTTAAPHGNTNA---------YNYYFYASNSCSLNSPAFLWALFLFHL 170
                P  +P +  +P G +           Y Y++ ASN+  L S +FL AL +  L
Sbjct: 125 DGKGSPPSVPSSPPSPKGQSQGQQQPPYPFPYFYFYTASNATLLFSSSFLIALVVSSL 172

[Close]

BLAST of Carg23949 vs. TAIR 10
Match: AT4G13340.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.2e-04
Identity = 45/95 (47.37%), Postives = 51/95 (53.68%), Query Frame = 0


Query: 46  STCPVICAPPP--PPTVTLKSPPPVPHSPPMASFPLNPPPSPPRP--TPSPPPPPVPVAA 105
           ST P + +PPP  PP      PPP P  PP+ S P  PPP PP P  +P PPPPP P   
Sbjct: 418 STPPTLTSPPPPSPPPPVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPP 477

Query: 106 SSHSPPPPAYKYYFSLPPPPPVLIPEPLPPTTAAP 137
             +SPPPP+       PPPPPV  P P PP    P
Sbjct: 478 PVYSPPPPS-----PPPPPPPVYSPPPPPPPPPPP 507

[Close]

BLAST of Carg23949 vs. TAIR 10
Match: AT5G07740.1 (actin binding )

HSP 1 Score: 42.7 bits (99), Expect = 3.5e-04
Identity = 42/92 (45.65%), Postives = 48/92 (52.17%), Query Frame = 0


Query: 54   PPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPP-RPTPSPPPPPVPVAASSHSPPPPAYK 113
            PPPPP  +  SPPP P  PP    P  PPP PP   +P PPPPP P   S   PPPP + 
Sbjct: 979  PPPPPPPSYGSPPPPPPPPPSYGSPPPPPPPPPGYGSPPPPPPPPPSYGSPPPPPPPPFS 1038

Query: 114  YYFSLPPPPPVLIPEPL------PPTTAAPHG 139
            +  S+PPPPP   P P+      PP     HG
Sbjct: 1039 HVSSIPPPPP---PPPMHGGAPPPPPPPPMHG 1067

The following BLAST results are available for this feature:

BLAST of Carg23949 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020664.1	4.8e-88	100.00	hypothetical protein SDJN02_17350, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6585753.1	1.4e-87	99.44	hypothetical protein SDJN03_18486, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022951103.1	8.4e-85	97.18	extensin-3-like [Cucurbita moschata]	[more]
XP_023536686.1	6.7e-82	94.92	leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo]	[more]
XP_023002897.1	1.3e-69	96.62	leucine-rich repeat extensin-like protein 3 [Cucurbita maxima]	[more]

BLAST of Carg23949 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg23949 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GGS2	4.1e-85	97.18	extensin-3-like OS=Cucurbita moschata OX=3662 GN=LOC111454053 PE=4 SV=1	[more]
A0A6J1KKV8	6.3e-70	96.62	leucine-rich repeat extensin-like protein 3 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1BT26	4.0e-48	72.78	leucine-rich repeat extensin-like protein 3 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A5A7VEH7	2.4e-45	68.11	Classical arabinogalactan protein 9-like OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A0A0KD44	1.1e-42	66.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G363610 PE=4 SV=1	[more]

BLAST of Carg23949 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11990.1	1.0e-08	38.76	proline-rich family protein	[more]
AT4G13340.1	1.2e-04	47.37	Leucine-rich repeat (LRR) family protein	[more]
AT5G07740.1	3.5e-04	45.65	actin binding	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23949-RA	Carg23949-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane