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Carg23690 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.TACGTCGACTTGTTATTGGGAGAATTCAAGCATTATAAAACAAGGCTGGCTCATAGCGGAGTTCGTAAGGAGGTAATCAATTAGGCAGAATTGATTAAGTTTTTTTTCATTTTTGTGTTTTTTATTTTATGAATTCTCTGTTGATAGCTGTTTTCATCATGTTTATAGCTACTGGTTTGTTGGTCCTTTTGTTCTCTGCAATGTATTTAACTTTGATCGAGTCTAATAGATCATTGACTAAGATGCTTTGTAAGCATATTCTTAACACCCAATATATCTGAGCCCACGATTCTGTTTTCATTCTTTATTATTTAAATGTTATATTTGTTTATGTTTTAAGATCTTCCTTTTAAATTGCTGAAGTTATGTATATATGTTTTCTTTCATTTCAGTAAACTTTAAATGAAAAATAAATTAAAATGGTATGCGATGCGTCACGGTCATGCTTGTCCAAGGTGTGTTGCCTATGGCCACATGACAGATGTCCCGGTCTTGTTTGTCCAAGAACCCCTTTTACATGCTTTCATCCTAGATTGGTCTTTACCACGGTCAATACAGGAGTGTATGACCATTCACCAAAACCATGTCTATACCCGACTTTCTGGGTTGTCTCAGACCTTGCAATGGGGCTTTAGCCCCCCAAAAATATATGTTTTGTTAAGATCGGTTAATTCAAAGGGGTGAATCTGGTCCGAAGTTATTAAAGGATGAGATCAATTCAGAAGTACCCTTTTTCCACTCTTGAATTGTTGAGTGGTAGGGTATCGAACAAACATTGAATACGGCAGTCCCGGAGGGTTTCGAAATTTATCGTTTTTGAATTTCTTGGCTTAGTGTGAGATCGAGGGACATGGGGACGTAAAAAAGGGGATCCTATATAAGACCGCGACTAATCCTGAAAGGAATGAATGGAAAAAAGCAGAGAATTGGATTTGGTTAGACAATGTGTGGTTGGTAAACAAGGATCGGTTCCATGGTTGCATGCTCGTTCCAAACCCTTTTGAGCCTCAGGCTGCTTGATTACACAGGCTTTTTTTACAGTCATGGCGTCCTATGAATTCCATTGATTCTTTGTCCCTGTAGTAACCCATGAGATGATTTTTCTTATTGAAGTTCAAGTTCTCTGGTTGATTGAAAGACGTTCTACTGTACTGATTGGGTTAAAGGGATGTATAACCTTAGCTTGATTATTAGTCTCTCCTTATATGTTTGACATTTGTAGGTTCAAGACCTCCTCTTGGAGTATGGTCTGGATATTGTTGCAGAGACACTTATTGAAGGTATATCACGAATAAAGCGATGTTCCGATGAAGGACGTGCTCTCATGTCATTGGATCTTCAGGTATCTATGAGCTATGCTACAGATTGCATCTTTGCTTACGCCATTATTTATAGGTTCCTTTCTCTTCTTCTCTGTTTTGCTGTTTAATAATGTAATTTTTATTCATTTTCAGGTTTTAATCAATGGCTTGCAACATTTTGTTTCTGAGAATGTGAAGCCTAAGTTACAAATGGTTGAGACTTTCATTAAGGTAAGCCTGAGCTTTAAGTTTTGAGCAAACTTGGTTGACTATTTATCTAAACTGTGTTATTTAACATACTAATGACGTATCATCGAACAGGCGTACTACCTTCCAGAAACCGAATATGTACACTGGGCACGAGCTCACCCGGTAAGAAACGTACCTTGAACTGAGAAAAGTTCGAATATTCACACTTGCAAAGATTGGTACTAAGAAACGTACATTGGTACTTTATCCATTGAGCTAGTTTTGGATTCGCAGCTTAATCCTTACGTATCGCTAATGTGAATCTATATATGAATACTGTGTTGAGGATTGTTGGGAGGGAGTCCCACGATGGCTAATTAAGGGAATGATCATGGGTTTATAAGTAAAGAATATATCTTCGTTAGTATGAGGCGTTCTCGTGAAGCCCAAAACAAAATCATGAGAGCTTATGCTCAAAGTGGACAATATCATATCATTGTGGAGATCTATAATTCCTAACATGGTATCAGAGTCATGCCCTTAACTTAGTCATGTAAGTATCGAATAAATTGTGTACTTTGTTCGAGGGCTCCAAAGGAAGGAGTCAAGTCTCGATTAAGGGGAGGCCATTCGAGGGCTCCATGGACCTCAAGGGAGGCTCTATGGTGTACTATATTTGAGGAGAGGATTGTTGAGGATTTTGGTGGGAGGGAGTCCCACGTTAGCTAATTAAGGGAATGATCCTGGGTTTATAAGTAAGGAATACATCTTCATTGATATGAGGCCTTTCGAGGAAACCCAAAGCAAAGCCACGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGATTCGTGATTCCTAACATACGGAAGTTTTGAAAACTAAATATTTTGATAGCATGACATGTTTATTGCTAATGAAAATAGTGTTGCATTTCTGACACGATTGTGACAACATATTTCTGTAAACATCGATCTTTAAATCCTTGACGCCTTTTTCGTGGCTTAGAGAATTTGCCCGTTTTTGCAGGAATACAGTAAGAGCCAAGTTATTGGTTTGGTTAACCTCGTTGCATCAATGAAAGGGTGGAAGAGAAAAACCCGGTTGGAAATACTGGAAAAGATCGAGTGA TACGTCGACTTGTTATTGGGAGAATTCAAGCATTATAAAACAAGGCTGGCTCATAGCGGAGTTCGTAAGGAGGTTCAAGACCTCCTCTTGGAGTATGGTCTGGATATTGTTGCAGAGACACTTATTGAAGGTATATCACGAATAAAGCGATGTTCCGATGAAGGACGTGCTCTCATGTCATTGGATCTTCAGGTTTTAATCAATGGCTTGCAACATTTTGTTTCTGAGAATGTGAAGCCTAAGTTACAAATGGTTGAGACTTTCATTAAGGCGTACTACCTTCCAGAAACCGAATATGTACACTGGGCACGAGCTCACCCGGAATACAGTAAGAGCCAAGTTATTGGTTTGGTTAACCTCGTTGCATCAATGAAAGGGTGGAAGAGAAAAACCCGGTTGGAAATACTGGAAAAGATCGAGTGA TACGTCGACTTGTTATTGGGAGAATTCAAGCATTATAAAACAAGGCTGGCTCATAGCGGAGTTCGTAAGGAGGTTCAAGACCTCCTCTTGGAGTATGGTCTGGATATTGTTGCAGAGACACTTATTGAAGGTATATCACGAATAAAGCGATGTTCCGATGAAGGACGTGCTCTCATGTCATTGGATCTTCAGGTTTTAATCAATGGCTTGCAACATTTTGTTTCTGAGAATGTGAAGCCTAAGTTACAAATGGTTGAGACTTTCATTAAGGCGTACTACCTTCCAGAAACCGAATATGTACACTGGGCACGAGCTCACCCGGAATACAGTAAGAGCCAAGTTATTGGTTTGGTTAACCTCGTTGCATCAATGAAAGGGTGGAAGAGAAAAACCCGGTTGGAAATACTGGAAAAGATCGAGTGA YVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE Homology
BLAST of Carg23690 vs. NCBI nr
Match: KAG7019304.1 (Syndetin, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 281.2 bits (718), Expect = 4.9e-72 Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0
BLAST of Carg23690 vs. NCBI nr
Match: XP_022964723.1 (syndetin-like isoform X2 [Cucurbita moschata] >XP_022964724.1 syndetin-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 281.2 bits (718), Expect = 4.9e-72 Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0
BLAST of Carg23690 vs. NCBI nr
Match: XP_022964722.1 (syndetin-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 281.2 bits (718), Expect = 4.9e-72 Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0
BLAST of Carg23690 vs. NCBI nr
Match: XP_023519396.1 (syndetin-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023519397.1 syndetin-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 280.8 bits (717), Expect = 6.5e-72 Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 0
BLAST of Carg23690 vs. NCBI nr
Match: XP_023519395.1 (syndetin-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 280.8 bits (717), Expect = 6.5e-72 Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 0
BLAST of Carg23690 vs. ExPASy Swiss-Prot
Match: Q96JG6 (Syndetin OS=Homo sapiens OX=9606 GN=VPS50 PE=1 SV=3) HSP 1 Score: 95.9 bits (237), Expect = 3.9e-19 Identity = 54/144 (37.50%), Postives = 78/144 (54.17%), Query Frame = 0
BLAST of Carg23690 vs. ExPASy Swiss-Prot
Match: Q8CI71 (Syndetin OS=Mus musculus OX=10090 GN=Vps50 PE=1 SV=2) HSP 1 Score: 95.9 bits (237), Expect = 3.9e-19 Identity = 54/144 (37.50%), Postives = 78/144 (54.17%), Query Frame = 0
BLAST of Carg23690 vs. ExPASy Swiss-Prot
Match: Q5ZKV9 (Syndetin OS=Gallus gallus OX=9031 GN=VPS50 PE=2 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 1.1e-18 Identity = 54/144 (37.50%), Postives = 77/144 (53.47%), Query Frame = 0
BLAST of Carg23690 vs. ExPASy Swiss-Prot
Match: F1LSG8 (Syndetin OS=Rattus norvegicus OX=10116 GN=Vps50 PE=1 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 1.9e-18 Identity = 53/144 (36.81%), Postives = 77/144 (53.47%), Query Frame = 0
BLAST of Carg23690 vs. ExPASy TrEMBL
Match: A0A6J1HP30 (syndetin-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464715 PE=4 SV=1) HSP 1 Score: 281.2 bits (718), Expect = 2.4e-72 Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0
BLAST of Carg23690 vs. ExPASy TrEMBL
Match: A0A6J1HII5 (syndetin-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464715 PE=4 SV=1) HSP 1 Score: 281.2 bits (718), Expect = 2.4e-72 Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0
BLAST of Carg23690 vs. ExPASy TrEMBL
Match: A0A6J1I2F9 (syndetin-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469296 PE=4 SV=1) HSP 1 Score: 277.3 bits (708), Expect = 3.5e-71 Identity = 138/140 (98.57%), Postives = 138/140 (98.57%), Query Frame = 0
BLAST of Carg23690 vs. ExPASy TrEMBL
Match: A0A6J1I532 (syndetin-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469296 PE=4 SV=1) HSP 1 Score: 277.3 bits (708), Expect = 3.5e-71 Identity = 138/140 (98.57%), Postives = 138/140 (98.57%), Query Frame = 0
BLAST of Carg23690 vs. ExPASy TrEMBL
Match: A0A1S3CG39 (syndetin OS=Cucumis melo OX=3656 GN=LOC103500532 PE=4 SV=1) HSP 1 Score: 275.4 bits (703), Expect = 1.3e-70 Identity = 135/140 (96.43%), Postives = 139/140 (99.29%), Query Frame = 0
BLAST of Carg23690 vs. TAIR 10
Match: AT2G27900.1 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 316 Blast hits to 252 proteins in 92 species: Archae - 0; Bacteria - 2; Metazoa - 200; Fungi - 2; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). ) HSP 1 Score: 248.4 bits (633), Expect = 3.3e-66 Identity = 116/140 (82.86%), Postives = 132/140 (94.29%), Query Frame = 0
BLAST of Carg23690 vs. TAIR 10
Match: AT2G27900.2 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 248.4 bits (633), Expect = 3.3e-66 Identity = 116/140 (82.86%), Postives = 132/140 (94.29%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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