Carg23652 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg23652
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	F-box protein SKIP24 isoform X1
Location	Carg_Chr03: 2886509 .. 2888244 (+)
RNA-Seq Expression	Carg23652
Synteny	Carg23652

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGAATTGCCAGACGAGCTATGGAGACAAATTCTGGAAATTGGCGTTAAGAGGTGTGATTTCACTTACAGAGATCTCTGTTGCATCTCCATCTCTTCTCGCCGACTTCGCCGCCTCTCCGACGACGAATGTCTATGGTCTCACCTTCTCTCCTCCGATTACCCTTCCTCATCTTCTTCTTTTTCATCCTCCGACGCCTCTTCGAAGTTCCTTTACAAACTCAGGTACACGGAACAATTTGTGAACTGCACCATATATCTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTGTCTCGTGTAATGGCGTTTGGTTAATCTGATTACGATCGGACGAATTTGTATGTTCGTGTTCCTTTCCTCTTCTGGACGATGATTCTTTTTTTTTTTTTTTTTTTTTTGGTTTTTGGATTTTGGTTCTTGTTCTGGTCAGGTTGGAGAGAGATAGGTATAAGAAGGCCGAGAAGCATAGGAGAACAATGTTTAGAAAGAATAACCAAATAAAGGCGCATTTTAGAAGGCTTGAAGAATTAGAGGAAGGTTTGGTGGAGGAGACCAAGAAATTGACAAGGACCTTGACGGAATTGTCTAATTTACGCACGGTCAGGTAGTGTTCAGCAATTAATTCAAAATTTCAGTTATATTTTCTGTTCTTTCCTCGTTTGATGCTTTAGAAGCTGGTGGAAATGAGGGGAAAATGAGTGCTGGAATCCTAAATTTTCCTTGGAAAATTCTTGGAACTTGTGTGCTTCTGCAACTTAGTTGATTGCATTTAGTTAAATCGTTGATTGGAGTTGTTTGAGTATTATTCTGGGCAGTGAGTAAAATGTCAAGTTTGGTTTATATTCAAAAATTTTAGATATGATAATTATGTTTGGTAGTCACAGGGAAGCATCAGTAGCTTTGAGAGTCTGGCAGCCAGAGGTCATTAGGGCAAGGCAAAGGCAAATTGTCGAACAATGCAGCGTGTCTGTTGATTCTCGCTTGCGGACTCTCGATATGGAGCTCAAGCTTTGTGAGCTACAAATTTCCATTTCTAGGAAAGCACTTGTAAGTTTTAGATGTTGAAACGTTATTTTCCCATTCGATAACAACTGCAATTTTAATTTGTAACACTGCTCGCTACAGAAAGCTGAAAAACGGAGACTCGACGTAGCTAAAGAAGAGTTAGCTTCATTGAAGTACCACCCTCTAAAGTATTATCATAGATTTGTAGATAGCAGTAGTAGTGGACCTGGCATCAAGAGGAGGTCAGAGGATGTAATAAATGTAAGATCCTTGCTTGTTGCTTCTACTTCAAATTTTCTGATCGCGGGTTTAAATTTTTTTGTCATCTCCATGATGGTTTTGTTACCACGAAGTCTAACTGCTTGTCCCCTGTTTGTTCTTGAATTCTAATGTGTGCACTGTGCTCTATTAGCAGTTTTCTTCGTCAACCATCGTCATGTTTTCACGTTGTGTTAGAATCTCTCCCAGTTTTACTAGATAAACTTGTTAGGATACTTCGTATTTCATATAATGAAAGTTTCCTATTCATGCAACGGTGTTCGTTATTCGTTGGTGAATTATCCAATGTCTGGAACTTGATGTTTTTTTGAACTTTGACCTCCATAAGTAACACATATATAGAGGTGGGGGGGGAGGCTTTTTTCTTGTCATTGATTTGTAATTAGGTCTGATTGTTACTTGTTCTATATTTTATATACATGATCTATATACTGTAACAACC

mRNA sequence

ATGTCAGAATTGCCAGACGAGCTATGGAGACAAATTCTGGAAATTGGCGTTAAGAGGTGTGATTTCACTTACAGAGATCTCTGTTGCATCTCCATCTCTTCTCGCCGACTTCGCCGCCTCTCCGACGACGAATGTCTATGGTCTCACCTTCTCTCCTCCGATTACCCTTCCTCATCTTCTTCTTTTTCATCCTCCGACGCCTCTTCGAAGTTCCTTTACAAACTCAGGTTGGAGAGAGATAGGTATAAGAAGGCCGAGAAGCATAGGAGAACAATGTTTAGAAAGAATAACCAAATAAAGGCGCATTTTAGAAGGCTTGAAGAATTAGAGGAAGGTTTGGTGGAGGAGACCAAGAAATTGACAAGGACCTTGACGGAATTGTCTAATTTACGCACGGTCAGTCACAGGGAAGCATCAGTAGCTTTGAGAGTCTGGCAGCCAGAGGTCATTAGGGCAAGGCAAAGGCAAATTGTCGAACAATGCAGCGTGTCTGTTGATTCTCGCTTGCGGACTCTCGATATGGAGCTCAAGCTTTGTGAGCTACAAATTTCCATTTCTAGGAAAGCACTTAAAGCTGAAAAACGGAGACTCGACGTAGCTAAAGAAGAGTTAGCTTCATTGAAGTACCACCCTCTAAAGTATTATCATAGATTTGTAGATAGCAGTAGTAGTGGACCTGGCATCAAGAGGAGGTCAGAGGATGTAATAAATGTAAGATCCTTGCTTGTTGCTTCTACTTCAAATTTTCTGATCGCGGGTTTAAATTTTTTTGTCATCTCCATGATGGTTTTGTTACCACGAAGTCTAACTGCTTGTCCCCTGTTTGTTCTTGAATTCTAATGTGTGCACTGTGCTCTATTAGCAGTTTTCTTCGTCAACCATCGTCATGTTTTCACGTTGTGTTAGAATCTCTCCCAGTTTTACTAGATAAACTTGTTAGGATACTTCGTATTTCATATAATGAAAGTTTCCTATTCATGCAACGGTGTTCGTTATTCGTTGGTGAATTATCCAATGTCTGGAACTTGATGTTTTTTTGAACTTTGACCTCCATAAGTAACACATATATAGAGGTGGGGGGGGAGGCTTTTTTCTTGTCATTGATTTGTAATTAGACATGATCTATATACTGTAACAACC

Coding sequence (CDS)

ATGTCAGAATTGCCAGACGAGCTATGGAGACAAATTCTGGAAATTGGCGTTAAGAGGTGTGATTTCACTTACAGAGATCTCTGTTGCATCTCCATCTCTTCTCGCCGACTTCGCCGCCTCTCCGACGACGAATGTCTATGGTCTCACCTTCTCTCCTCCGATTACCCTTCCTCATCTTCTTCTTTTTCATCCTCCGACGCCTCTTCGAAGTTCCTTTACAAACTCAGGTTGGAGAGAGATAGGTATAAGAAGGCCGAGAAGCATAGGAGAACAATGTTTAGAAAGAATAACCAAATAAAGGCGCATTTTAGAAGGCTTGAAGAATTAGAGGAAGGTTTGGTGGAGGAGACCAAGAAATTGACAAGGACCTTGACGGAATTGTCTAATTTACGCACGGTCAGTCACAGGGAAGCATCAGTAGCTTTGAGAGTCTGGCAGCCAGAGGTCATTAGGGCAAGGCAAAGGCAAATTGTCGAACAATGCAGCGTGTCTGTTGATTCTCGCTTGCGGACTCTCGATATGGAGCTCAAGCTTTGTGAGCTACAAATTTCCATTTCTAGGAAAGCACTTAAAGCTGAAAAACGGAGACTCGACGTAGCTAAAGAAGAGTTAGCTTCATTGAAGTACCACCCTCTAAAGTATTATCATAGATTTGTAGATAGCAGTAGTAGTGGACCTGGCATCAAGAGGAGGTCAGAGGATGTAATAAATGTAAGATCCTTGCTTGTTGCTTCTACTTCAAATTTTCTGATCGCGGGTTTAAATTTTTTTGTCATCTCCATGATGGTTTTGTTACCACGAAGTCTAACTGCTTGTCCCCTGTTTGTTCTTGAATTCTAA

Protein sequence

MSELPDELWRQILEIGVKRCDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDYPSSSSSFSSSDASSKFLYKLRLERDRYKKAEKHRRTMFRKNNQIKAHFRRLEELEEGLVEETKKLTRTLTELSNLRTVSHREASVALRVWQPEVIRARQRQIVEQCSVSVDSRLRTLDMELKLCELQISISRKALKAEKRRLDVAKEELASLKYHPLKYYHRFVDSSSSGPGIKRRSEDVINVRSLLVASTSNFLIAGLNFFVISMMVLLPRSLTACPLFVLEF

Homology

[Close]

BLAST of Carg23652 vs. NCBI nr
Match: KAG7033621.1 (F-box protein SKIP24, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 524.2 bits (1349), Expect = 6.7e-145
Identity = 279/279 (100.00%), Postives = 279/279 (100.00%), Query Frame = 0


Query: 1   MSELPDELWRQILEIGVKRCDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDYPSSSS 60
           MSELPDELWRQILEIGVKRCDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDYPSSSS
Sbjct: 1   MSELPDELWRQILEIGVKRCDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDYPSSSS 60

Query: 61  SFSSSDASSKFLYKLRLERDRYKKAEKHRRTMFRKNNQIKAHFRRLEELEEGLVEETKKL 120
           SFSSSDASSKFLYKLRLERDRYKKAEKHRRTMFRKNNQIKAHFRRLEELEEGLVEETKKL
Sbjct: 61  SFSSSDASSKFLYKLRLERDRYKKAEKHRRTMFRKNNQIKAHFRRLEELEEGLVEETKKL 120

Query: 121 TRTLTELSNLRTVSHREASVALRVWQPEVIRARQRQIVEQCSVSVDSRLRTLDMELKLCE 180
           TRTLTELSNLRTVSHREASVALRVWQPEVIRARQRQIVEQCSVSVDSRLRTLDMELKLCE
Sbjct: 121 TRTLTELSNLRTVSHREASVALRVWQPEVIRARQRQIVEQCSVSVDSRLRTLDMELKLCE 180

Query: 181 LQISISRKALKAEKRRLDVAKEELASLKYHPLKYYHRFVDSSSSGPGIKRRSEDVINVRS 240
           LQISISRKALKAEKRRLDVAKEELASLKYHPLKYYHRFVDSSSSGPGIKRRSEDVINVRS
Sbjct: 181 LQISISRKALKAEKRRLDVAKEELASLKYHPLKYYHRFVDSSSSGPGIKRRSEDVINVRS 240

Query: 241 LLVASTSNFLIAGLNFFVISMMVLLPRSLTACPLFVLEF 280
           LLVASTSNFLIAGLNFFVISMMVLLPRSLTACPLFVLEF
Sbjct: 241 LLVASTSNFLIAGLNFFVISMMVLLPRSLTACPLFVLEF 279

[Close]

BLAST of Carg23652 vs. NCBI nr
Match: KAG6603437.1 (F-box protein SKIP24, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 450.7 bits (1158), Expect = 9.4e-123
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0


Query: 1   MSELPDELWRQILEIGVKRCDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDYPSSSS 60
           MSELPDELWRQILEIGVKRCDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDYPSSSS
Sbjct: 1   MSELPDELWRQILEIGVKRCDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDYPSSSS 60

Query: 61  SFSSSDASSKFLYKLRLERDRYKKAEKHRRTMFRKNNQIKAHFRRLEELEEGLVEETKKL 120
           SFSSSDASSKFLYKLRLERDRYKKAEKHRRTMFRKNNQIKAHFRRLEELEEGLVEETKKL
Sbjct: 61  SFSSSDASSKFLYKLRLERDRYKKAEKHRRTMFRKNNQIKAHFRRLEELEEGLVEETKKL 120

Query: 121 TRTLTELSNLRTVSHREASVALRVWQPEVIRARQRQIVEQCSVSVDSRLRTLDMELKLCE 180
           TRTLTELSNLRTVSHREASVALRVWQPEVIRARQRQIVEQCSVSVDSRLRTLDMELKLCE
Sbjct: 121 TRTLTELSNLRTVSHREASVALRVWQPEVIRARQRQIVEQCSVSVDSRLRTLDMELKLCE 180

Query: 181 LQISISRKALKAEKRRLDVAKEELASLKYHPLKYYHRFVDSSSSGPGIKRRSEDVIN 238
           LQISISRKALKAEKRRLDVAKEELASLKYHPLKYYHRFVDSSSSGPGIKRRSEDVIN
Sbjct: 181 LQISISRKALKAEKRRLDVAKEELASLKYHPLKYYHRFVDSSSSGPGIKRRSEDVIN 237

[Close]

BLAST of Carg23652 vs. NCBI nr
Match: XP_022950743.1 (F-box protein SKIP24 isoform X1 [Cucurbita moschata])

HSP 1 Score: 448.4 bits (1152), Expect = 4.7e-122
Identity = 235/237 (99.16%), Postives = 237/237 (100.00%), Query Frame = 0


Query: 1   MSELPDELWRQILEIGVKRCDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDYPSSSS 60
           MSELPDELWRQILEIGVKRCDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDYPSSSS
Sbjct: 1   MSELPDELWRQILEIGVKRCDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDYPSSSS 60

Query: 61  SFSSSDASSKFLYKLRLERDRYKKAEKHRRTMFRKNNQIKAHFRRLEELEEGLVEETKKL 120
           SFSSSDASSKFLYKLRLERDRYKKAEKHRRT+FRKNNQIKAHFRRLEELEEGLVEETKKL
Sbjct: 61  SFSSSDASSKFLYKLRLERDRYKKAEKHRRTVFRKNNQIKAHFRRLEELEEGLVEETKKL 120

Query: 121 TRTLTELSNLRTVSHREASVALRVWQPEVIRARQRQIVEQCSVSVDSRLRTLDMELKLCE 180
           TRTLTELSNLRTVSHREASVALRVWQPEVIRARQRQIVEQCSVSVDSRLRTLDMELKLCE
Sbjct: 121 TRTLTELSNLRTVSHREASVALRVWQPEVIRARQRQIVEQCSVSVDSRLRTLDMELKLCE 180

Query: 181 LQISISRKALKAEKRRLDVAKEELASLKYHPLKYYHRFVDSSSSGPGIKRRSEDVIN 238
           LQ+SISRKALKAEKRRLDVAKEELASLKYHPLKYYHRFVDSSSSGPGIKRRSEDVIN
Sbjct: 181 LQLSISRKALKAEKRRLDVAKEELASLKYHPLKYYHRFVDSSSSGPGIKRRSEDVIN 237

[Close]

BLAST of Carg23652 vs. NCBI nr
Match: XP_022950744.1 (F-box protein SKIP24 isoform X2 [Cucurbita moschata])

HSP 1 Score: 438.7 bits (1127), Expect = 3.7e-119
Identity = 233/237 (98.31%), Postives = 235/237 (99.16%), Query Frame = 0


Query: 1   MSELPDELWRQILEIGVKRCDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDYPSSSS 60
           MSELPDELWRQILEIGVKRCDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDYPSSSS
Sbjct: 1   MSELPDELWRQILEIGVKRCDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDYPSSSS 60

Query: 61  SFSSSDASSKFLYKLRLERDRYKKAEKHRRTMFRKNNQIKAHFRRLEELEEGLVEETKKL 120
           SFSSSDASSKFLYKLRLERDRYKKAEKHRRT+FRKNNQIKAHFRRLEELEEGLVEETKKL
Sbjct: 61  SFSSSDASSKFLYKLRLERDRYKKAEKHRRTVFRKNNQIKAHFRRLEELEEGLVEETKKL 120

Query: 121 TRTLTELSNLRTVSHREASVALRVWQPEVIRARQRQIVEQCSVSVDSRLRTLDMELKLCE 180
           TRTLTELSNLRTV  REASVALRVWQPEVIRARQRQIVEQCSVSVDSRLRTLDMELKLCE
Sbjct: 121 TRTLTELSNLRTV--REASVALRVWQPEVIRARQRQIVEQCSVSVDSRLRTLDMELKLCE 180

Query: 181 LQISISRKALKAEKRRLDVAKEELASLKYHPLKYYHRFVDSSSSGPGIKRRSEDVIN 238
           LQ+SISRKALKAEKRRLDVAKEELASLKYHPLKYYHRFVDSSSSGPGIKRRSEDVIN
Sbjct: 181 LQLSISRKALKAEKRRLDVAKEELASLKYHPLKYYHRFVDSSSSGPGIKRRSEDVIN 235

[Close]

BLAST of Carg23652 vs. NCBI nr
Match: XP_023543486.1 (F-box protein SKIP24 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 437.2 bits (1123), Expect = 1.1e-118
Identity = 230/237 (97.05%), Postives = 233/237 (98.31%), Query Frame = 0


Query: 1   MSELPDELWRQILEIGVKRCDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDYPSSSS 60
           MSELPDELWRQILEIGVK CDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDYPSSSS
Sbjct: 1   MSELPDELWRQILEIGVKSCDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDYPSSSS 60

Query: 61  SFSSSDASSKFLYKLRLERDRYKKAEKHRRTMFRKNNQIKAHFRRLEELEEGLVEETKKL 120
           SFSSSDASSKFLYKLRLERDRYKKAEKHRR +FRKNNQIKAHF+RLEELEEGL+EETKKL
Sbjct: 61  SFSSSDASSKFLYKLRLERDRYKKAEKHRRAVFRKNNQIKAHFKRLEELEEGLMEETKKL 120

Query: 121 TRTLTELSNLRTVSHREASVALRVWQPEVIRARQRQIVEQCSVSVDSRLRTLDMELKLCE 180
           TRTLTELSNLRTVSHREASVALRVWQPEVIRARQRQIVEQCSVSVDSR RTLDMELKLCE
Sbjct: 121 TRTLTELSNLRTVSHREASVALRVWQPEVIRARQRQIVEQCSVSVDSRSRTLDMELKLCE 180

Query: 181 LQISISRKALKAEKRRLDVAKEELASLKYHPLKYYHRFVDSSSSGPGIKRRSEDVIN 238
           LQISISRKALKAEKRRLDVAKEELASLKYHPLKYYHRFVDSSSS PGIKRRSEDVIN
Sbjct: 181 LQISISRKALKAEKRRLDVAKEELASLKYHPLKYYHRFVDSSSSEPGIKRRSEDVIN 237

[Close]

BLAST of Carg23652 vs. ExPASy Swiss-Prot
Match: Q9CAZ0 (F-box protein SKIP24 OS=Arabidopsis thaliana OX=3702 GN=SKIP24 PE=1 SV=2)

HSP 1 Score: 202.2 bits (513), Expect = 7.6e-51
Identity = 116/237 (48.95%), Postives = 161/237 (67.93%), Query Frame = 0


Query: 2   SELPDELWRQILEIGVKRCDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDYPSS-SS 61
           +E+PDELWR+ILEIGVK   F+Y+DLCCISISSRRL RLS D+ LW  LL  D+P+   S
Sbjct: 4   NEIPDELWRKILEIGVKSSTFSYKDLCCISISSRRLFRLSCDDSLWDLLLVHDFPNHIVS 63

Query: 62  SFSSSDASSKFLYKLRLERDRYKKAEKHRRTMFRKNNQIKAHFRRLEELEEGLVEETKKL 121
           + SSS++ +KF+Y  R ER++ +K   HRR + RK ++I    RR+ ELE  L +E ++L
Sbjct: 64  ASSSSESPTKFIYMTRFEREKERKLAAHRRALLRKESEISEWGRRIRELEARLSDEAERL 123

Query: 122 TRTLTELSNLRTVSHREASVALRVWQPEVIRARQRQIVEQCSVSVDSRLRTLDMELKLCE 181
             +  + S+L  V  R+ASVAL VWQPEV+R RQ+Q+VEQ +V V+ RLR L+ME+KLC+
Sbjct: 124 QSSSLQFSDLLKV--RQASVALNVWQPEVVRGRQKQMVEQNAVPVEGRLRALEMEMKLCK 183

Query: 182 LQISISRKALKAEKRRLDVAKEELASLKYHPLKYYHRFVDSSSSGPGIKRRSEDVIN 238
            QI    +AL+  K R D+A +EL S+KYHPL+ Y    +      G  ++ +  IN
Sbjct: 184 QQIMGLNRALREVKHRYDIAIKELESMKYHPLRDYKSIRNGDQGSNGKTKKLKTSIN 238

[Close]

BLAST of Carg23652 vs. ExPASy TrEMBL
Match: A0A6J1GFR2 (F-box protein SKIP24 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453752 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 2.3e-122
Identity = 235/237 (99.16%), Postives = 237/237 (100.00%), Query Frame = 0


Query: 1   MSELPDELWRQILEIGVKRCDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDYPSSSS 60
           MSELPDELWRQILEIGVKRCDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDYPSSSS
Sbjct: 1   MSELPDELWRQILEIGVKRCDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDYPSSSS 60

Query: 61  SFSSSDASSKFLYKLRLERDRYKKAEKHRRTMFRKNNQIKAHFRRLEELEEGLVEETKKL 120
           SFSSSDASSKFLYKLRLERDRYKKAEKHRRT+FRKNNQIKAHFRRLEELEEGLVEETKKL
Sbjct: 61  SFSSSDASSKFLYKLRLERDRYKKAEKHRRTVFRKNNQIKAHFRRLEELEEGLVEETKKL 120

Query: 121 TRTLTELSNLRTVSHREASVALRVWQPEVIRARQRQIVEQCSVSVDSRLRTLDMELKLCE 180
           TRTLTELSNLRTVSHREASVALRVWQPEVIRARQRQIVEQCSVSVDSRLRTLDMELKLCE
Sbjct: 121 TRTLTELSNLRTVSHREASVALRVWQPEVIRARQRQIVEQCSVSVDSRLRTLDMELKLCE 180

Query: 181 LQISISRKALKAEKRRLDVAKEELASLKYHPLKYYHRFVDSSSSGPGIKRRSEDVIN 238
           LQ+SISRKALKAEKRRLDVAKEELASLKYHPLKYYHRFVDSSSSGPGIKRRSEDVIN
Sbjct: 181 LQLSISRKALKAEKRRLDVAKEELASLKYHPLKYYHRFVDSSSSGPGIKRRSEDVIN 237

[Close]

BLAST of Carg23652 vs. ExPASy TrEMBL
Match: A0A6J1GGR1 (F-box protein SKIP24 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453752 PE=4 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 1.8e-119
Identity = 233/237 (98.31%), Postives = 235/237 (99.16%), Query Frame = 0


Query: 1   MSELPDELWRQILEIGVKRCDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDYPSSSS 60
           MSELPDELWRQILEIGVKRCDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDYPSSSS
Sbjct: 1   MSELPDELWRQILEIGVKRCDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDYPSSSS 60

Query: 61  SFSSSDASSKFLYKLRLERDRYKKAEKHRRTMFRKNNQIKAHFRRLEELEEGLVEETKKL 120
           SFSSSDASSKFLYKLRLERDRYKKAEKHRRT+FRKNNQIKAHFRRLEELEEGLVEETKKL
Sbjct: 61  SFSSSDASSKFLYKLRLERDRYKKAEKHRRTVFRKNNQIKAHFRRLEELEEGLVEETKKL 120

Query: 121 TRTLTELSNLRTVSHREASVALRVWQPEVIRARQRQIVEQCSVSVDSRLRTLDMELKLCE 180
           TRTLTELSNLRTV  REASVALRVWQPEVIRARQRQIVEQCSVSVDSRLRTLDMELKLCE
Sbjct: 121 TRTLTELSNLRTV--REASVALRVWQPEVIRARQRQIVEQCSVSVDSRLRTLDMELKLCE 180

Query: 181 LQISISRKALKAEKRRLDVAKEELASLKYHPLKYYHRFVDSSSSGPGIKRRSEDVIN 238
           LQ+SISRKALKAEKRRLDVAKEELASLKYHPLKYYHRFVDSSSSGPGIKRRSEDVIN
Sbjct: 181 LQLSISRKALKAEKRRLDVAKEELASLKYHPLKYYHRFVDSSSSGPGIKRRSEDVIN 235

[Close]

BLAST of Carg23652 vs. ExPASy TrEMBL
Match: A0A6J1HVP4 (F-box protein SKIP24 OS=Cucurbita maxima OX=3661 GN=LOC111467269 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.6e-107
Identity = 214/230 (93.04%), Postives = 220/230 (95.65%), Query Frame = 0


Query: 1   MSELPDELWRQILEIGVKRCDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDYPSSSS 60
           MSELPDELW QILEIGVK  DFTYRDLCCISISSRRLRRLSDDECLWSHLLSSD+PSSSS
Sbjct: 1   MSELPDELWSQILEIGVKSYDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDFPSSSS 60

Query: 61  SFSSSDASSKFLYKLRLERDRYKKAEKHRRTMFRKNNQIKAHFRRLEELEEGLVEETKKL 120
           SFSSS ASSKFLYKLRLER+RYK AEKHRR +FRKNNQIK HFRRLEELEEGL+EETKKL
Sbjct: 61  SFSSSHASSKFLYKLRLERERYKMAEKHRRAVFRKNNQIKGHFRRLEELEEGLMEETKKL 120

Query: 121 TRTLTELSNLRTVSHREASVALRVWQPEVIRARQRQIVEQCSVSVDSRLRTLDMELKLCE 180
           TRTLTELSNLRTV  REASVALRVWQPEVIRARQRQIVEQCSVSVDSRLRTLDMELKLCE
Sbjct: 121 TRTLTELSNLRTV--REASVALRVWQPEVIRARQRQIVEQCSVSVDSRLRTLDMELKLCE 180

Query: 181 LQISISRKALKAEKRRLDVAKEELASLKYHPLKYYHRFVDSSSSGPGIKR 231
           LQISISRKALKAEK+RLDVAKEELASLKYHPLKYYHRFVDSSS+ PGIKR
Sbjct: 181 LQISISRKALKAEKQRLDVAKEELASLKYHPLKYYHRFVDSSSNEPGIKR 228

[Close]

BLAST of Carg23652 vs. ExPASy TrEMBL
Match: A0A5D3CCI3 (F-box protein SKIP24 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G001230 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 6.6e-82
Identity = 173/239 (72.38%), Postives = 200/239 (83.68%), Query Frame = 0


Query: 1   MSELPDELWRQILEIGVKRCDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDYPSSSS 60
           MSELPDELW QIL+IGVK    TY+DLCC+SISS RLRRLSD + LWSHLLSSDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFSSSDASSKFLYKLRLERDRYKKAEKHRRTMFRKNNQIKAHFRRLEELEEGLVEETKKL 120
           SF SS +SSK LYK+RLERDRY+K   H R + RK +QI  H+RR+ +LEE L+EET K 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TRTLTELSNLRTVSHREASVALRVWQPEVIRARQRQIVEQCSVSVDSRLRTLDMELKLCE 180
           T TLTELSNLRTV  REA+VAL VWQPEVIRARQ+QIVEQCSVSVDSRLRTLDMELKLC+
Sbjct: 121 TTTLTELSNLRTV--REATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCK 180

Query: 181 LQISISRKALKAEKRRLDVAKEELASLKYHPLKYYHRFVDSSSSGPGIKRRSEDVINVR 240
            QI+I +KALK EK+RL++AKEEL SLKYHPLK  H+ ++SS++   IKRRS+D INVR
Sbjct: 181 QQIAIFQKALKDEKKRLELAKEELTSLKYHPLK-DHKSMNSSNNDSHIKRRSKDAINVR 236

[Close]

BLAST of Carg23652 vs. ExPASy TrEMBL
Match: A0A5A7TK06 (F-box protein SKIP24 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G001020 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 1.1e-81
Identity = 173/242 (71.49%), Postives = 200/242 (82.64%), Query Frame = 0


Query: 1   MSELPDELWRQILEIGVKRCDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDYPSSSS 60
           MSELPDELW QIL+IGVK    TY+DLCC+SISS RLRRLSD + LWSHLLSSDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFSSSDASSKFLYKLRLERDRYKKAEKHRRTMFRKNNQIKAHFRRLEELEEGLVEETKKL 120
           SF SS +SSK LYK+RLERDRY+K   H R + RK +QI  H+RR+ +LEE L+EET K 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TRTLTELSNLRTVSH---REASVALRVWQPEVIRARQRQIVEQCSVSVDSRLRTLDMELK 180
           T TLTELSNLRTV     REA+VAL VWQPEVIRARQ+QIVEQCSVSVDSRLRTLDMELK
Sbjct: 121 TTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 180

Query: 181 LCELQISISRKALKAEKRRLDVAKEELASLKYHPLKYYHRFVDSSSSGPGIKRRSEDVIN 240
           LC+ QI+I +KALK EK+RL++AKEEL SLKYHPLK  H+ ++SS++   IKRRS+D IN
Sbjct: 181 LCKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLK-DHKSMNSSNNDSHIKRRSKDAIN 240

[Close]

BLAST of Carg23652 vs. TAIR 10
Match: AT1G08710.1 (F-box family protein )

HSP 1 Score: 202.2 bits (513), Expect = 5.4e-52
Identity = 116/237 (48.95%), Postives = 161/237 (67.93%), Query Frame = 0


Query: 2   SELPDELWRQILEIGVKRCDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDYPSS-SS 61
           +E+PDELWR+ILEIGVK   F+Y+DLCCISISSRRL RLS D+ LW  LL  D+P+   S
Sbjct: 4   NEIPDELWRKILEIGVKSSTFSYKDLCCISISSRRLFRLSCDDSLWDLLLVHDFPNHIVS 63

Query: 62  SFSSSDASSKFLYKLRLERDRYKKAEKHRRTMFRKNNQIKAHFRRLEELEEGLVEETKKL 121
           + SSS++ +KF+Y  R ER++ +K   HRR + RK ++I    RR+ ELE  L +E ++L
Sbjct: 64  ASSSSESPTKFIYMTRFEREKERKLAAHRRALLRKESEISEWGRRIRELEARLSDEAERL 123

Query: 122 TRTLTELSNLRTVSHREASVALRVWQPEVIRARQRQIVEQCSVSVDSRLRTLDMELKLCE 181
             +  + S+L  V  R+ASVAL VWQPEV+R RQ+Q+VEQ +V V+ RLR L+ME+KLC+
Sbjct: 124 QSSSLQFSDLLKV--RQASVALNVWQPEVVRGRQKQMVEQNAVPVEGRLRALEMEMKLCK 183

Query: 182 LQISISRKALKAEKRRLDVAKEELASLKYHPLKYYHRFVDSSSSGPGIKRRSEDVIN 238
            QI    +AL+  K R D+A +EL S+KYHPL+ Y    +      G  ++ +  IN
Sbjct: 184 QQIMGLNRALREVKHRYDIAIKELESMKYHPLRDYKSIRNGDQGSNGKTKKLKTSIN 238

[Close]

BLAST of Carg23652 vs. TAIR 10
Match: AT1G08710.2 (F-box family protein )

HSP 1 Score: 202.2 bits (513), Expect = 5.4e-52
Identity = 116/237 (48.95%), Postives = 161/237 (67.93%), Query Frame = 0


Query: 2   SELPDELWRQILEIGVKRCDFTYRDLCCISISSRRLRRLSDDECLWSHLLSSDYPSS-SS 61
           +E+PDELWR+ILEIGVK   F+Y+DLCCISISSRRL RLS D+ LW  LL  D+P+   S
Sbjct: 4   NEIPDELWRKILEIGVKSSTFSYKDLCCISISSRRLFRLSCDDSLWDLLLVHDFPNHIVS 63

Query: 62  SFSSSDASSKFLYKLRLERDRYKKAEKHRRTMFRKNNQIKAHFRRLEELEEGLVEETKKL 121
           + SSS++ +KF+Y  R ER++ +K   HRR + RK ++I    RR+ ELE  L +E ++L
Sbjct: 64  ASSSSESPTKFIYMTRFEREKERKLAAHRRALLRKESEISEWGRRIRELEARLSDEAERL 123

Query: 122 TRTLTELSNLRTVSHREASVALRVWQPEVIRARQRQIVEQCSVSVDSRLRTLDMELKLCE 181
             +  + S+L  V  R+ASVAL VWQPEV+R RQ+Q+VEQ +V V+ RLR L+ME+KLC+
Sbjct: 124 QSSSLQFSDLLKV--RQASVALNVWQPEVVRGRQKQMVEQNAVPVEGRLRALEMEMKLCK 183

Query: 182 LQISISRKALKAEKRRLDVAKEELASLKYHPLKYYHRFVDSSSSGPGIKRRSEDVIN 238
            QI    +AL+  K R D+A +EL S+KYHPL+ Y    +      G  ++ +  IN
Sbjct: 184 QQIMGLNRALREVKHRYDIAIKELESMKYHPLRDYKSIRNGDQGSNGKTKKLKTSIN 238

The following BLAST results are available for this feature:

BLAST of Carg23652 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033621.1	6.7e-145	100.00	F-box protein SKIP24, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6603437.1	9.4e-123	100.00	F-box protein SKIP24, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022950743.1	4.7e-122	99.16	F-box protein SKIP24 isoform X1 [Cucurbita moschata]	[more]
XP_022950744.1	3.7e-119	98.31	F-box protein SKIP24 isoform X2 [Cucurbita moschata]	[more]
XP_023543486.1	1.1e-118	97.05	F-box protein SKIP24 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg23652 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAZ0	7.6e-51	48.95	F-box protein SKIP24 OS=Arabidopsis thaliana OX=3702 GN=SKIP24 PE=1 SV=2	[more]

BLAST of Carg23652 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GFR2	2.3e-122	99.16	F-box protein SKIP24 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453752 PE...	[more]
A0A6J1GGR1	1.8e-119	98.31	F-box protein SKIP24 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453752 PE...	[more]
A0A6J1HVP4	1.6e-107	93.04	F-box protein SKIP24 OS=Cucurbita maxima OX=3661 GN=LOC111467269 PE=4 SV=1	[more]
A0A5D3CCI3	6.6e-82	72.38	F-box protein SKIP24 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7TK06	1.1e-81	71.49	F-box protein SKIP24 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of Carg23652 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08710.1	5.4e-52	48.95	F-box family protein	[more]
AT1G08710.2	5.4e-52	48.95	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 99..126
None	No IPR available	COILS	Coil	Coil	coord: 183..210
None	No IPR available	GENE3D	1.20.1280.50		coord: 1..110 e-value: 2.3E-5 score: 26.2
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 1..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23652-RA	Carg23652-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0005515	protein binding