Carg23647 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg23647
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCytochrome c oxidase
LocationCarg_Chr03: 2826012 .. 2827025 (-)
RNA-Seq ExpressionCarg23647
SyntenyCarg23647
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGCGCCTCAGCGACCCAGAGACATCAGCAAGGTGGCTCGCGGCGAGCAAGCCCCAAGGCCTGTTCACGAATACGGCACCGTTTCGAAGCCTCCGCCGCCCTCTTCCTCCTCCGCTTCCTCCGCCCAGACCAACCTCGACGGTAACGGCGATCGCCGCCACGGTGGCAAAGACAAAGACATTAAGGTCGGAAAAATTTTGAAAAGTAAATTAATAATGTCTATTTTGAGCTTAACTCATAACTTTGCTTTAGGTTTCTCCACAATACCTTACCCCTTATTCTTTGATTATAAATTCATATTATTCTCTAAATTATGGAAAAAGAAAATAGAATTTAAATAATAATTTTAAAATTTTTTTATAATTATGGAAGGATATTAATAATTTTTTTTTAATTTAAGAATATTTTTTAAATCATGATTTTTGTTTAGAATAAAGTATTTTATATTTTTTAAAATTTAAATATATTATTATCTTTAAAGCAAGTAATATTGTATAATGAGGGTGTAGTAGGTGGTGGTGGGAGAGGGAGTAGAGACAGCACCAAATGACATGCGGTTTCCTTTCACCAACCAAACACGGCACTGTTATACACGCTATTTGGAATACCATAGGTAAATTATAATTACTATACACTTCCTTATTAATCCATAAGCTTGTACCACGGTTAATTTATTTTAGTTCAGTTCTTTTAGCTGCGTACAGAAGAAGGGGAAACACGCGCCTGAATGCAACAAGTTCGCCAAATATTACCGTTCTCTATGCCCCGCAGAATGGGTAACTCAAATTATTTACGTTTCTACTCACTTATTACCGTATTTACATTTTTAAAAATTGTGTTGAACAATATATTATTATCTTATTTTTTTAAATAGGAAGTTCGATTAACGATATATTATTATCTATCTATTAAAATTTGAATTTTCAATTTCGCTCATTTAGTTTTTGTTGATGTAGATTGAGAAATGGAACGAGCAAAGGGAGCTTGGCATCTTCCCTGGTCCGATATAA

mRNA sequence

ATGTCGGCGCCTCAGCGACCCAGAGACATCAGCAAGGTGGCTCGCGGCGAGCAAGCCCCAAGGCCTGTTCACGAATACGGCACCGTGGTGGTGGGAGAGGGAGTAGAGACAGCACCAAATGACATGCGGTTTCCTTTCACCAACCAAACACGGCACTGTTATACACGCTATTTGGAATACCATAGCTGCGTACAGAAGAAGGGGAAACACGCGCCTGAATGCAACAAGTTCGCCAAATATTACCGTTCTCTATGCCCCGCAGAATGGATTGAGAAATGGAACGAGCAAAGGGAGCTTGGCATCTTCCCTGGTCCGATATAA

Coding sequence (CDS)

ATGTCGGCGCCTCAGCGACCCAGAGACATCAGCAAGGTGGCTCGCGGCGAGCAAGCCCCAAGGCCTGTTCACGAATACGGCACCGTGGTGGTGGGAGAGGGAGTAGAGACAGCACCAAATGACATGCGGTTTCCTTTCACCAACCAAACACGGCACTGTTATACACGCTATTTGGAATACCATAGCTGCGTACAGAAGAAGGGGAAACACGCGCCTGAATGCAACAAGTTCGCCAAATATTACCGTTCTCTATGCCCCGCAGAATGGATTGAGAAATGGAACGAGCAAAGGGAGCTTGGCATCTTCCCTGGTCCGATATAA

Protein sequence

MSAPQRPRDISKVARGEQAPRPVHEYGTVVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI
Homology
[Close]
BLAST of Carg23647 vs. NCBI nr
Match: KAG7033616.1 (Cytochrome c oxidase subunit 6b-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 233.8 bits (595), Expect = 6.8e-58
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MSAPQRPRDISKVARGEQAPRPVHEYGTVVVGEGVETAPNDMRFPFTNQTRHCYTRYLEY 60
           MSAPQRPRDISKVARGEQAPRPVHEYGTVVVGEGVETAPNDMRFPFTNQTRHCYTRYLEY
Sbjct: 1   MSAPQRPRDISKVARGEQAPRPVHEYGTVVVGEGVETAPNDMRFPFTNQTRHCYTRYLEY 60

Query: 61  HSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI 107
           HSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI
Sbjct: 61  HSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELGIFPGPI 106

[Close]
BLAST of Carg23647 vs. NCBI nr
Match: XP_023542926.1 (cytochrome c oxidase subunit 6b-3-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.5 bits (524), Expect = 1.2e-49
Identity = 101/142 (71.13%), Postives = 105/142 (73.94%), Query Frame = 0 

Query: 1   MSAPQRPRDISKVARGEQAPRPVHEYGT-------------------------------- 60
           MSAPQRPRDISKVARGEQAPRPVHEYGT                                
Sbjct: 1   MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNGDRRHGGKDE 60

Query: 61  ----VVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSL 107
               VVV EGVETAPNDMRFPFTNQTRHCYTRYL+YHSCV+KKG+HAPEC+KFAKYYRSL
Sbjct: 61  DSKVVVVEEGVETAPNDMRFPFTNQTRHCYTRYLDYHSCVRKKGEHAPECHKFAKYYRSL 120

[Close]
BLAST of Carg23647 vs. NCBI nr
Match: XP_023542925.1 (cytochrome c oxidase subunit 6b-3-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.1 bits (523), Expect = 1.5e-49
Identity = 101/143 (70.63%), Postives = 105/143 (73.43%), Query Frame = 0 

Query: 1   MSAPQRPRDISKVARGEQAPRPVHEYGT-------------------------------- 60
           MSAPQRPRDISKVARGEQAPRPVHEYGT                                
Sbjct: 1   MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNGDRRHGGKDE 60

Query: 61  -----VVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRS 107
                VVV EGVETAPNDMRFPFTNQTRHCYTRYL+YHSCV+KKG+HAPEC+KFAKYYRS
Sbjct: 61  DSKVVVVVEEGVETAPNDMRFPFTNQTRHCYTRYLDYHSCVRKKGEHAPECHKFAKYYRS 120

[Close]
BLAST of Carg23647 vs. NCBI nr
Match: XP_022932983.1 (cytochrome c oxidase subunit 6b-3-like [Cucurbita moschata])

HSP 1 Score: 203.0 bits (515), Expect = 1.3e-48
Identity = 100/141 (70.92%), Postives = 103/141 (73.05%), Query Frame = 0 

Query: 1   MSAPQRPRDISKVARGEQAPRPVHEYGT-------------------------------- 60
           MSAPQRPRDISKVARGEQAPRPVHEYGT                                
Sbjct: 1   MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGGKDK 60

Query: 61  ---VVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLC 107
              VVV EGVETAPNDMRFPFTNQTRHCYTRYLEYHS +QKKG+HAPEC+KFAKYYRSLC
Sbjct: 61  DSKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLC 120

[Close]
BLAST of Carg23647 vs. NCBI nr
Match: XP_022973259.1 (cytochrome c oxidase subunit 6b-3-like [Cucurbita maxima])

HSP 1 Score: 202.2 bits (513), Expect = 2.2e-48
Identity = 99/142 (69.72%), Postives = 103/142 (72.54%), Query Frame = 0 

Query: 1   MSAPQRPRDISKVARGEQAPRPVHEYGT-------------------------------- 60
           MSAPQRPRDISKVARGEQAPRPVHEYGT                                
Sbjct: 1   MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSSASSAQTNLDGNGNHRHGGKD 60

Query: 61  ----VVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSL 107
               VVV EGVETAPNDMRFPFTNQTRHCYTRYLEYHSC+QKKG+H PEC+KFAKYYRSL
Sbjct: 61  EYGKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCLQKKGEHVPECDKFAKYYRSL 120

[Close]
BLAST of Carg23647 vs. ExPASy Swiss-Prot
Match: Q9S7L9 (Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana OX=3702 GN=COX6B-1 PE=1 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-29
Identity = 52/72 (72.22%), Postives = 62/72 (86.11%), Query Frame = 0 

Query: 35  VETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWN 94
           +ETAP D RFP TNQTRHC+TRY+EYH CV  KG  APEC+KFAK+YRSLCP+EW+++WN
Sbjct: 119 LETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWVDRWN 178

Query: 95  EQRELGIFPGPI 107
           EQRE G FPGP+
Sbjct: 179 EQRENGTFPGPL 190

[Close]
BLAST of Carg23647 vs. ExPASy Swiss-Prot
Match: Q9SUD3 (Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana OX=3702 GN=COX6B-3 PE=2 SV=2)

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-27
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 0 

Query: 35  VETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWN 94
           ++TAP D RFP TNQTRHC+TRY+E+H C   KG+ A EC +FAKYYR+LCP EW++KWN
Sbjct: 7   LKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWVDKWN 66

Query: 95  EQRELGIFPGPI 107
           EQRE G FPGP+
Sbjct: 67  EQRETGTFPGPL 78

[Close]
BLAST of Carg23647 vs. ExPASy Swiss-Prot
Match: Q945L0 (Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana OX=3702 GN=COX6B-2 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 6.5e-27
Identity = 46/72 (63.89%), Postives = 59/72 (81.94%), Query Frame = 0 

Query: 35  VETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWN 94
           ++TAP D RFP TNQTRHC+TRY+E+H C   KG+ + +C +FAKYYR+LCP EW++KWN
Sbjct: 7   LKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVDKWN 66

Query: 95  EQRELGIFPGPI 107
           EQRE G FPGP+
Sbjct: 67  EQRESGTFPGPL 78

[Close]
BLAST of Carg23647 vs. ExPASy Swiss-Prot
Match: Q9LPJ2 (Putative cytochrome c oxidase subunit 6b-like OS=Arabidopsis thaliana OX=3702 GN=At1g32710 PE=3 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-19
Identity = 48/101 (47.52%), Postives = 61/101 (60.40%), Query Frame = 0 

Query: 6   RPRDISKVARGEQAPRPVHEYGTVVV-------------GEGVET-APNDMRFPFTNQTR 65
           R RDISKVARG+QAPRP H  GTV                 G ET A  + RFP TN+TR
Sbjct: 13  RSRDISKVARGQQAPRPAHTPGTVSPPPENEATFRAKRGDSGRETDAAVEERFPVTNETR 72

Query: 66  HCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIEK 93
           HC+ R+++YH C++K G+ A +CN    Y RS+CP E + K
Sbjct: 73  HCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEELVSK 113

[Close]
BLAST of Carg23647 vs. ExPASy Swiss-Prot
Match: O94581 (Cytochrome c oxidase subunit 12, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cox12 PE=3 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 9.4e-18
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 41  DMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWNEQRELG 100
           D RFP TNQT+HC+  Y++Y  C++ KG+    C +F   Y+SLCP EW+E+W+EQRE G
Sbjct: 21  DARFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENG 80

Query: 101 IFPGPI 107
            FP PI
Sbjct: 81  TFPAPI 86

[Close]
BLAST of Carg23647 vs. ExPASy TrEMBL
Match: A0A6J1F3D0 (cytochrome c oxidase subunit 6b-3-like OS=Cucurbita moschata OX=3662 GN=LOC111439604 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 6.3e-49
Identity = 100/141 (70.92%), Postives = 103/141 (73.05%), Query Frame = 0 

Query: 1   MSAPQRPRDISKVARGEQAPRPVHEYGT-------------------------------- 60
           MSAPQRPRDISKVARGEQAPRPVHEYGT                                
Sbjct: 1   MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGGKDK 60

Query: 61  ---VVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLC 107
              VVV EGVETAPNDMRFPFTNQTRHCYTRYLEYHS +QKKG+HAPEC+KFAKYYRSLC
Sbjct: 61  DSKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLC 120

[Close]
BLAST of Carg23647 vs. ExPASy TrEMBL
Match: A0A6J1IE20 (cytochrome c oxidase subunit 6b-3-like OS=Cucurbita maxima OX=3661 GN=LOC111471817 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.1e-48
Identity = 99/142 (69.72%), Postives = 103/142 (72.54%), Query Frame = 0 

Query: 1   MSAPQRPRDISKVARGEQAPRPVHEYGT-------------------------------- 60
           MSAPQRPRDISKVARGEQAPRPVHEYGT                                
Sbjct: 1   MSAPQRPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSSASSAQTNLDGNGNHRHGGKD 60

Query: 61  ----VVVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSL 107
               VVV EGVETAPNDMRFPFTNQTRHCYTRYLEYHSC+QKKG+H PEC+KFAKYYRSL
Sbjct: 61  EYGKVVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCLQKKGEHVPECDKFAKYYRSL 120

[Close]
BLAST of Carg23647 vs. ExPASy TrEMBL
Match: A0A5D3E4S8 (Putative cytochrome c oxidase subunit 6b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004020 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.1e-43
Identity = 86/135 (63.70%), Postives = 93/135 (68.89%), Query Frame = 0 

Query: 6   RPRDISKVARGEQAPRPVHEYGT----------------------------------VVV 65
           R RD+SKVARGEQAPRP HEYGT                                  VV+
Sbjct: 13  RSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNDDHRRSGSEDKDKDNKVVM 72

Query: 66  GEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIE 107
            EGVETAP+D+RFPFTNQTRHCY RYLEYH CVQKKG+HAPEC KFA YYRSLCP EW+E
Sbjct: 73  DEGVETAPSDLRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKFANYYRSLCPGEWVE 132

[Close]
BLAST of Carg23647 vs. ExPASy TrEMBL
Match: A0A1S3CQ05 (putative cytochrome c oxidase subunit 6b-like OS=Cucumis melo OX=3656 GN=LOC103503497 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.1e-43
Identity = 86/135 (63.70%), Postives = 93/135 (68.89%), Query Frame = 0 

Query: 6   RPRDISKVARGEQAPRPVHEYGT----------------------------------VVV 65
           R RD+SKVARGEQAPRP HEYGT                                  VV+
Sbjct: 13  RSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNDDHRRSGSEDKDKDNKVVM 72

Query: 66  GEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIE 107
            EGVETAP+D+RFPFTNQTRHCY RYLEYH CVQKKG+HAPEC KFA YYRSLCP EW+E
Sbjct: 73  DEGVETAPSDLRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKFANYYRSLCPGEWVE 132

[Close]
BLAST of Carg23647 vs. ExPASy TrEMBL
Match: A0A0A0LEH8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G910720 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.4e-42
Identity = 85/137 (62.04%), Postives = 93/137 (67.88%), Query Frame = 0 

Query: 6   RPRDISKVARGEQAPRPVHEYGT------------------------------------V 65
           R RD+SKVARGEQAPRP HEYGT                                    V
Sbjct: 13  RSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSEDRDNKV 72

Query: 66  VVGEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEW 107
           V+ EGV TAP+D+RFPFTNQTRHCY RYLEYH CVQKKG+HAPEC KFAKYYRSLCP EW
Sbjct: 73  VMDEGVGTAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKFAKYYRSLCPGEW 132

[Close]
BLAST of Carg23647 vs. TAIR 10
Match: AT1G22450.1 (cytochrome C oxidase 6B )

HSP 1 Score: 130.2 bits (326), Expect = 9.9e-31
Identity = 52/72 (72.22%), Postives = 62/72 (86.11%), Query Frame = 0 

Query: 35  VETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWN 94
           +ETAP D RFP TNQTRHC+TRY+EYH CV  KG  APEC+KFAK+YRSLCP+EW+++WN
Sbjct: 119 LETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWVDRWN 178

Query: 95  EQRELGIFPGPI 107
           EQRE G FPGP+
Sbjct: 179 EQRENGTFPGPL 190

[Close]
BLAST of Carg23647 vs. TAIR 10
Match: AT4G28060.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 123.6 bits (309), Expect = 9.3e-29
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 0 

Query: 35  VETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWN 94
           ++TAP D RFP TNQTRHC+TRY+E+H C   KG+ A EC +FAKYYR+LCP EW++KWN
Sbjct: 7   LKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWVDKWN 66

Query: 95  EQRELGIFPGPI 107
           EQRE G FPGP+
Sbjct: 67  EQRETGTFPGPL 78

[Close]
BLAST of Carg23647 vs. TAIR 10
Match: AT5G57815.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 121.3 bits (303), Expect = 4.6e-28
Identity = 46/72 (63.89%), Postives = 59/72 (81.94%), Query Frame = 0 

Query: 35  VETAPNDMRFPFTNQTRHCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIEKWN 94
           ++TAP D RFP TNQTRHC+TRY+E+H C   KG+ + +C +FAKYYR+LCP EW++KWN
Sbjct: 7   LKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVDKWN 66

Query: 95  EQRELGIFPGPI 107
           EQRE G FPGP+
Sbjct: 67  EQRESGTFPGPL 78

[Close]
BLAST of Carg23647 vs. TAIR 10
Match: AT1G32710.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 97.1 bits (240), Expect = 9.3e-21
Identity = 48/101 (47.52%), Postives = 61/101 (60.40%), Query Frame = 0 

Query: 6   RPRDISKVARGEQAPRPVHEYGTVVV-------------GEGVET-APNDMRFPFTNQTR 65
           R RDISKVARG+QAPRP H  GTV                 G ET A  + RFP TN+TR
Sbjct: 13  RSRDISKVARGQQAPRPAHTPGTVSPPPENEATFRAKRGDSGRETDAAVEERFPVTNETR 72

Query: 66  HCYTRYLEYHSCVQKKGKHAPECNKFAKYYRSLCPAEWIEK 93
           HC+ R+++YH C++K G+ A +CN    Y RS+CP E + K
Sbjct: 73  HCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEELVSK 113

The following BLAST results are available for this feature:
BLAST of Carg23647 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033616.16.8e-58100.00Cytochrome c oxidase subunit 6b-1, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023542926.11.2e-4971.13cytochrome c oxidase subunit 6b-3-like isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023542925.11.5e-4970.63cytochrome c oxidase subunit 6b-3-like isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022932983.11.3e-4870.92cytochrome c oxidase subunit 6b-3-like [Cucurbita moschata][more]
XP_022973259.12.2e-4869.72cytochrome c oxidase subunit 6b-3-like [Cucurbita maxima][more]
BLAST of Carg23647 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9S7L91.4e-2972.22Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana OX=3702 GN=COX6B-1 PE=... [more]
Q9SUD31.3e-2766.67Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana OX=3702 GN=COX6B-3 PE=... [more]
Q945L06.5e-2763.89Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana OX=3702 GN=COX6B-2 PE=... [more]
Q9LPJ21.3e-1947.52Putative cytochrome c oxidase subunit 6b-like OS=Arabidopsis thaliana OX=3702 GN... [more]
O945819.4e-1853.03Cytochrome c oxidase subunit 12, mitochondrial OS=Schizosaccharomyces pombe (str... [more]
BLAST of Carg23647 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1F3D06.3e-4970.92cytochrome c oxidase subunit 6b-3-like OS=Cucurbita moschata OX=3662 GN=LOC11143... [more]
A0A6J1IE201.1e-4869.72cytochrome c oxidase subunit 6b-3-like OS=Cucurbita maxima OX=3661 GN=LOC1114718... [more]
A0A5D3E4S85.1e-4363.70Putative cytochrome c oxidase subunit 6b-like OS=Cucumis melo var. makuwa OX=119... [more]
A0A1S3CQ055.1e-4363.70putative cytochrome c oxidase subunit 6b-like OS=Cucumis melo OX=3656 GN=LOC1035... [more]
A0A0A0LEH87.4e-4262.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G910720 PE=4 SV=1[more]
BLAST of Carg23647 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G22450.19.9e-3172.22cytochrome C oxidase 6B [more]
AT4G28060.19.3e-2966.67Cytochrome c oxidase, subunit Vib family protein [more]
AT5G57815.14.6e-2863.89Cytochrome c oxidase, subunit Vib family protein [more]
AT1G32710.19.3e-2147.52Cytochrome c oxidase, subunit Vib family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003213Cytochrome c oxidase, subunit VIbPFAMPF02297COX6Bcoord: 43..97
e-value: 2.1E-16
score: 59.9
IPR003213Cytochrome c oxidase, subunit VIbCDDcd00926Cyt_c_Oxidase_VIbcoord: 36..105
e-value: 7.99638E-36
score: 115.098
IPR036549Cytochrome c oxidase, subunit VIb superfamilyGENE3D1.10.10.140Cytochrome c oxidase, subunit VIbcoord: 32..106
e-value: 9.2E-32
score: 110.8
IPR036549Cytochrome c oxidase, subunit VIb superfamilySUPERFAMILY47694Cytochrome c oxidase subunit hcoord: 35..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR46281:SF14CYTOCHROME C OXIDASE SUBUNIT 6B-1coord: 33..106
NoneNo IPR availablePANTHERPTHR46281CYTOCHROME C OXIDASE SUBUNIT 6Bcoord: 33..106
NoneNo IPR availablePROSITEPS51808CHCHcoord: 50..93
score: 11.150652

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg23647-RACarg23647-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005739 mitochondrion
cellular_component GO:0045277 respiratory chain complex IV