Carg23639 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg23639
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	mediator of RNA polymerase II transcription subunit 32-like
Location	Carg_Chr20: 4378542 .. 4379009 (+)
RNA-Seq Expression	Carg23639
Synteny	Carg23639

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGCTTAGTGGACTCTTTAAATAACGCATATCAGGAGTTCGTTTCTGGAGCAGCCAATGTCCTTGAAGCAAATGAGGCCTCAGGGGCTCAGAAGACAGCAGCAACCGATGCGGCTCTTGAAAATTTTAAACAGAAATGGGAGCTATTCAGGGTTGCTTGTGATCAAGCAGAGGAATTTGTGGAGTCTGTGAAGCAAAGGATAGGATCAGAGTGCCTTGTTGATGAGGCCACTGGTTCACTGGCTAGCAAGTCTGGGCAGGCCGCCGCCGCCACCACCACCGGCCTTCCTCCGATCAGCGCCGTTCGGTTGGAACAGATGAGCAAAGCTGTGAGATGGCTTGTGATTGAGCTGCAGCATGGGTCAGGAGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGCTTCAGCACACTCCCACCCTTCTGCTCCCTTTGATGCTAGATTTACTGAGGATGCAACACAATAG

mRNA sequence

ATGGATAGCTTAGTGGACTCTTTAAATAACGCATATCAGGAGTTCGTTTCTGGAGCAGCCAATGTCCTTGAAGCAAATGAGGCCTCAGGGGCTCAGAAGACAGCAGCAACCGATGCGGCTCTTGAAAATTTTAAACAGAAATGGGAGCTATTCAGGGTTGCTTGTGATCAAGCAGAGGAATTTGTGGAGTCTGTGAAGCAAAGGATAGGATCAGAGTGCCTTGTTGATGAGGCCACTGGTTCACTGGCTAGCAAGTCTGGGCAGGCCGCCGCCGCCACCACCACCGGCCTTCCTCCGATCAGCGCCGTTCGGTTGGAACAGATGAGCAAAGCTGTGAGATGGCTTGTGATTGAGCTGCAGCATGGGTCAGGAGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGCTTCAGCACACTCCCACCCTTCTGCTCCCTTTGATGCTAGATTTACTGAGGATGCAACACAATAG

Coding sequence (CDS)

ATGGATAGCTTAGTGGACTCTTTAAATAACGCATATCAGGAGTTCGTTTCTGGAGCAGCCAATGTCCTTGAAGCAAATGAGGCCTCAGGGGCTCAGAAGACAGCAGCAACCGATGCGGCTCTTGAAAATTTTAAACAGAAATGGGAGCTATTCAGGGTTGCTTGTGATCAAGCAGAGGAATTTGTGGAGTCTGTGAAGCAAAGGATAGGATCAGAGTGCCTTGTTGATGAGGCCACTGGTTCACTGGCTAGCAAGTCTGGGCAGGCCGCCGCCGCCACCACCACCGGCCTTCCTCCGATCAGCGCCGTTCGGTTGGAACAGATGAGCAAAGCTGTGAGATGGCTTGTGATTGAGCTGCAGCATGGGTCAGGAGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGCTTCAGCACACTCCCACCCTTCTGCTCCCTTTGATGCTAGATTTACTGAGGATGCAACACAATAG

Protein sequence

MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ

Homology

[Close]

BLAST of Carg23639 vs. NCBI nr
Match: KAG7010941.1 (Mediator of RNA polymerase II transcription subunit 32, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 282.7 bits (722), Expect = 1.9e-72
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPISAVRLEQMSKAVRWLVIELQ 120
           FVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPISAVRLEQMSKAVRWLVIELQ
Sbjct: 61  FVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPISAVRLEQMSKAVRWLVIELQ 120

Query: 121 HGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ 156
           HGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ
Sbjct: 121 HGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ 155

[Close]

BLAST of Carg23639 vs. NCBI nr
Match: KAG6571130.1 (Mediator of RNA polymerase II transcription subunit 32, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 278.1 bits (710), Expect = 4.6e-71
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 323 MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 382

Query: 61  FVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPISAVRLEQMSKAVRWLVIELQ 120
           FVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPISAVRLEQMSKAVRWLVIELQ
Sbjct: 383 FVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPISAVRLEQMSKAVRWLVIELQ 442

Query: 121 HGSG-AAAAAAAAASASAHSHPSAPFDARFTEDATQ 156
           HGSG AAAAAAAAASASAHSHPSAPFDARFTEDATQ
Sbjct: 443 HGSGAAAAAAAAAASASAHSHPSAPFDARFTEDATQ 478

[Close]

BLAST of Carg23639 vs. NCBI nr
Match: XP_023512845.1 (mediator of RNA polymerase II transcription subunit 32-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 272.7 bits (696), Expect = 1.9e-69
Identity = 152/156 (97.44%), Postives = 152/156 (97.44%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLASKSGQAAA-ATTTGLPPISAVRLEQMSKAVRWLVIEL 120
           FVESVKQRIGSECLVDEATGSLA KSGQAAA A T GLPPISAVRLEQMSKAVRWLVIEL
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQAAATAATAGLPPISAVRLEQMSKAVRWLVIEL 120

Query: 121 QHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ 156
           QHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ
Sbjct: 121 QHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ 156

[Close]

BLAST of Carg23639 vs. NCBI nr
Match: XP_023512843.1 (mediator of RNA polymerase II transcription subunit 32-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 272.7 bits (696), Expect = 1.9e-69
Identity = 152/156 (97.44%), Postives = 152/156 (97.44%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 16  MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 75

Query: 61  FVESVKQRIGSECLVDEATGSLASKSGQAAA-ATTTGLPPISAVRLEQMSKAVRWLVIEL 120
           FVESVKQRIGSECLVDEATGSLA KSGQAAA A T GLPPISAVRLEQMSKAVRWLVIEL
Sbjct: 76  FVESVKQRIGSECLVDEATGSLAGKSGQAAATAATAGLPPISAVRLEQMSKAVRWLVIEL 135

Query: 121 QHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ 156
           QHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ
Sbjct: 136 QHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ 171

[Close]

BLAST of Carg23639 vs. NCBI nr
Match: XP_022944394.1 (mediator of RNA polymerase II transcription subunit 32-like [Cucurbita moschata] >XP_022944395.1 mediator of RNA polymerase II transcription subunit 32-like [Cucurbita moschata] >XP_022944396.1 mediator of RNA polymerase II transcription subunit 32-like [Cucurbita moschata])

HSP 1 Score: 266.5 bits (680), Expect = 1.4e-67
Identity = 150/155 (96.77%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPISAVRLEQMSKAVRWLVIELQ 120
           FVESVKQRIGSECLVDEATGSLA KSGQ AAATTTGLPPISAVRLEQMSKAVRWLVIELQ
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQ-AAATTTGLPPISAVRLEQMSKAVRWLVIELQ 120

Query: 121 HGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ 156
           HGSG   AAAAAASASAHSHPSAPFDARFTEDATQ
Sbjct: 121 HGSG---AAAAAASASAHSHPSAPFDARFTEDATQ 151

[Close]

BLAST of Carg23639 vs. ExPASy Swiss-Prot
Match: Q84VW5 (Mediator of RNA polymerase II transcription subunit 32 OS=Arabidopsis thaliana OX=3702 GN=MED32 PE=1 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.3e-44
Identity = 106/159 (66.67%), Postives = 122/159 (76.73%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MD++VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACDQAEE
Sbjct: 1   MDNIVDSLNKAYEKFVLASAGVLESKESAGGQKALLTDTALENFKEKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATG-SLASKSGQAAAATT---TGLPPISAVRLEQMSKAVRWLV 120
           FVESVKQRIGSECLVDEATG +  +  GQA AA T   T LPPISAVRLEQMS+AVRWLV
Sbjct: 61  FVESVKQRIGSECLVDEATGLTTTAAGGQAPAAVTGAATSLPPISAVRLEQMSRAVRWLV 120

Query: 121 IELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ 156
           +ELQ GSG        A  S HS  S  FD+RF+ED+TQ
Sbjct: 121 LELQRGSG-------VAPGSVHS-SSTGFDSRFSEDSTQ 151

[Close]

BLAST of Carg23639 vs. ExPASy TrEMBL
Match: A0A6J1FUB1 (mediator of RNA polymerase II transcription subunit 32-like OS=Cucurbita moschata OX=3662 GN=LOC111448854 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 6.7e-68
Identity = 150/155 (96.77%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPISAVRLEQMSKAVRWLVIELQ 120
           FVESVKQRIGSECLVDEATGSLA KSGQ AAATTTGLPPISAVRLEQMSKAVRWLVIELQ
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQ-AAATTTGLPPISAVRLEQMSKAVRWLVIELQ 120

Query: 121 HGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ 156
           HGSG   AAAAAASASAHSHPSAPFDARFTEDATQ
Sbjct: 121 HGSG---AAAAAASASAHSHPSAPFDARFTEDATQ 151

[Close]

BLAST of Carg23639 vs. ExPASy TrEMBL
Match: A0A6J1JH28 (mediator of RNA polymerase II transcription subunit 32-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484308 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 5.7e-67
Identity = 147/155 (94.84%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPISAVRLEQMSKAVRWLVIELQ 120
           FVESVKQRIGSECLVDEATGSLA KSGQ AAATTTGLPPISA+RLEQMSKAVRWLVIELQ
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQ-AAATTTGLPPISAIRLEQMSKAVRWLVIELQ 120

Query: 121 HGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ 156
           HGSG     AAAASASAHSHPSAPFDARFTEDATQ
Sbjct: 121 HGSG-----AAAASASAHSHPSAPFDARFTEDATQ 149

[Close]

BLAST of Carg23639 vs. ExPASy TrEMBL
Match: A0A6J1JEJ1 (mediator of RNA polymerase II transcription subunit 32-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484308 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 5.7e-67
Identity = 147/155 (94.84%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 24  MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 83

Query: 61  FVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPISAVRLEQMSKAVRWLVIELQ 120
           FVESVKQRIGSECLVDEATGSLA KSGQ AAATTTGLPPISA+RLEQMSKAVRWLVIELQ
Sbjct: 84  FVESVKQRIGSECLVDEATGSLAGKSGQ-AAATTTGLPPISAIRLEQMSKAVRWLVIELQ 143

Query: 121 HGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ 156
           HGSG     AAAASASAHSHPSAPFDARFTEDATQ
Sbjct: 144 HGSG-----AAAASASAHSHPSAPFDARFTEDATQ 172

[Close]

BLAST of Carg23639 vs. ExPASy TrEMBL
Match: A0A5A7TWZ7 (Mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G004640 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.2e-63
Identity = 141/155 (90.97%), Postives = 143/155 (92.26%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFV+GAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 5   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 64

Query: 61  FVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPISAVRLEQMSKAVRWLVIELQ 120
           FVESVKQRIGSECLVDEATGSLA KSGQ+    TTGLPPISAVRLEQMSKAVRWLVIELQ
Sbjct: 65  FVESVKQRIGSECLVDEATGSLAGKSGQSG---TTGLPPISAVRLEQMSKAVRWLVIELQ 124

Query: 121 HGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ 156
           HGSG      AAASASAHSH SAPFDARFTEDATQ
Sbjct: 125 HGSG------AAASASAHSHQSAPFDARFTEDATQ 150

[Close]

BLAST of Carg23639 vs. ExPASy TrEMBL
Match: A0A0A0LIN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245440 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.8e-63
Identity = 141/155 (90.97%), Postives = 143/155 (92.26%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFV+GAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPISAVRLEQMSKAVRWLVIELQ 120
           FVESVKQRIGSECLVDEATGSLA KSGQ+A   TT LPPISAVRLEQMSKAVRWLVIELQ
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSA---TTSLPPISAVRLEQMSKAVRWLVIELQ 120

Query: 121 HGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ 156
           HGSG      AAASASAHSH SAPFDARFTEDATQ
Sbjct: 121 HGSG------AAASASAHSHQSAPFDARFTEDATQ 146

[Close]

BLAST of Carg23639 vs. TAIR 10
Match: AT1G11760.1 (MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 180.6 bits (457), Expect = 9.4e-46
Identity = 106/159 (66.67%), Postives = 122/159 (76.73%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MD++VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACDQAEE
Sbjct: 1   MDNIVDSLNKAYEKFVLASAGVLESKESAGGQKALLTDTALENFKEKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATG-SLASKSGQAAAATT---TGLPPISAVRLEQMSKAVRWLV 120
           FVESVKQRIGSECLVDEATG +  +  GQA AA T   T LPPISAVRLEQMS+AVRWLV
Sbjct: 61  FVESVKQRIGSECLVDEATGLTTTAAGGQAPAAVTGAATSLPPISAVRLEQMSRAVRWLV 120

Query: 121 IELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ 156
           +ELQ GSG        A  S HS  S  FD+RF+ED+TQ
Sbjct: 121 LELQRGSG-------VAPGSVHS-SSTGFDSRFSEDSTQ 151

The following BLAST results are available for this feature:

BLAST of Carg23639 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010941.1	1.9e-72	100.00	Mediator of RNA polymerase II transcription subunit 32, partial [Cucurbita argyr...	[more]
KAG6571130.1	4.6e-71	99.36	Mediator of RNA polymerase II transcription subunit 32, partial [Cucurbita argyr...	[more]
XP_023512845.1	1.9e-69	97.44	mediator of RNA polymerase II transcription subunit 32-like isoform X2 [Cucurbit...	[more]
XP_023512843.1	1.9e-69	97.44	mediator of RNA polymerase II transcription subunit 32-like isoform X1 [Cucurbit...	[more]
XP_022944394.1	1.4e-67	96.77	mediator of RNA polymerase II transcription subunit 32-like [Cucurbita moschata]...	[more]

BLAST of Carg23639 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84VW5	1.3e-44	66.67	Mediator of RNA polymerase II transcription subunit 32 OS=Arabidopsis thaliana O...	[more]

BLAST of Carg23639 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FUB1	6.7e-68	96.77	mediator of RNA polymerase II transcription subunit 32-like OS=Cucurbita moschat...	[more]
A0A6J1JH28	5.7e-67	94.84	mediator of RNA polymerase II transcription subunit 32-like isoform X2 OS=Cucurb...	[more]
A0A6J1JEJ1	5.7e-67	94.84	mediator of RNA polymerase II transcription subunit 32-like isoform X1 OS=Cucurb...	[more]
A0A5A7TWZ7	2.2e-63	90.97	Mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo var. maku...	[more]
A0A0A0LIN7	3.8e-63	90.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245440 PE=4 SV=1	[more]

BLAST of Carg23639 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11760.1	9.4e-46	66.67	MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0;...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033244	Mediator of RNA polymerase II transcription subunit 32	PANTHER	PTHR35989	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 32	coord: 1..155
None	No IPR available	PANTHER	PTHR35989:SF1	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 32	coord: 1..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23639-RA	Carg23639-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009631	cold acclimation
biological_process	GO:0010150	leaf senescence
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0048364	root development
cellular_component	GO:0016592	mediator complex