Carg23629 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg23629
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	mitochondrial import receptor subunit TOM6 homolog
Location	Carg_Chr20: 4421534 .. 4423919 (-)
RNA-Seq Expression	Carg23629
Synteny	Carg23629

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAGAAGGGGGGTTTATTTGGATCCTTTGACTCGTTGTTAGGTCCTCCATGCGATTTGTCGACGAGGACCTTGGGTGAGTGACACGTCACTGTTCATGAATTTAAGGCCCTCGAGTTTTCATCTTCTGCGGACCATCACATTCCAATCTTCCATGTGTCTATTGCCACGTCACCAACCCTCCTCTCACTATATTATCAAACCTAATTCCAACCTATCTCAAATTCATTAAATTCCCATCCTATCCATCCCCAAACAACCTTCGAAGTTTATCCAAGGTATAACTCCGATCACTTAAAGAGATACACTACTTGAGTAGGTCTCTAACTAAACTTAGCAACACCACTTCAAACAAAGCATTAACTCGAACGCCAATGCAAAGTCTGACCTATCACGCTAGCTTGTTTTTGAACCCGCTAGCATGTACTTATTCAACCATATTCTCGCATCATAGTATAACGCAATTGCTCAATATATTACTTAAATCATATTCAATATGATGCTACAATGATATCATACAAATCTCATGCAATTAAATATGAAAAGAATATTAAGTTTTTTTTTTAATATTAAATAATGAAATAGGATAAAGTTTTCCCCAGTTGAATTAATGGAAAAAATTTGGCTTTCAAAAAGAATGGGAGGTGGAAGACACGTGGCAGAATTTGATTGGAGAAGGTGGGTAGATGTGGGCACAGAGAAGCAGAAAGTAAAAAGTGGTGGCCCACAGAAGAGGAGAGCAGGGATCTTCCATGAAATTTGATGCCAAAAAGGAAAACCCATTCATACGTAAAACAAAATATAATAATAATAATAATAATAAATAAATAAATAATTAAAAAGAAAATAAATAATTAAGATAATAGAATGGATGTATGAGAACCAGTGCAATTAGAGTCCACAGCCACAAAGTCATAAAAAATAAATTAAAAAAAAATAATTTAATTTAATAATAAATAAATAAATAAAATTTATTTTTTTTGGGTCAAAAGTTGATATTGATGTGAAGGGAAACTTTTTACATAATGGAGCACTAAAAATATGTTGGCCAATACAAATTCTCTCTCCATATCATTGAATACTAATAGATATTATAGGAAAAAATGTGGGTTTTGTTTTTAATATTTAATAAAATTTTAAATTATTAATTTTATATTTAAAAAATGTCGTCCTATAATATAATAATTACCAAATTTTAAATTTTAAAAAGTAAATATAGTTGTTATTCAATTCTCCGTTAAAATATAAATTTGGTCCCAATAATTTTAAAAATATTTAAAATCTAAGTCCAGTTTTGGAAGCTAAAATTAGATATTACAAATAATTTATATATTTGGATAAGTTTTATCTAATTTTTTAAATTATAATTTAATTAAAAACAAATTTCCATCCGAACAATTATATATTAAATAAAGAGTTGGACAATGTCTTTTTTATTCGATTTTATTAATTTTAATTTAAATTTCAATCCAATTGGATCATAAACTTAATTAAAATGGTAAATTTAATAATTATATATTAAAATTAAGTGATTTATCGAATTAAAAAAATCAATAAATTTATTAAATGTAAAATTAAAATTTGTATTTAATAATTTATCAATTCTTAAATATTTAAATTTTTTAAAAAAATTATTAGACTAAATTAATAAGAATATCCTTAAACTTTAAACTTGTCTCAAAATACTCATAAACTTTCAAAAGTTTGGATAATATTTCTAAAATTAATTTTGGATAAAAACAATTAATACTGTAATTCAAAAAAAAAAAAATTAACTCTAAAATTTTTTTAAAAGAGAGTCGTTAACTTCTAAAACATCCTTAAAACTTTCAAAAAAAAAATATTATTAATATCCTTAAATTTAAGGTTTAAAAAATACTAATAAATTTTGAAAAGTAACATTAAAAAAAAAATCTATCATATGAAATTATTTTCGTTTGTCCAGATAACAAAAAATTTTAACATTTTTTAAAAATAAAGTACTAACAGTAAAATTATTTTTAATTTTTTTAAATCGAAGAATATTTTAAAAATAAAATATTAATCATTTTTATTATTGATATTATTAGGAGTATTTTTTAAATAAAAATTAAAGAATATTTTTATGTAAAAATATATTGTTCGGACTCGGCCTTAAACCCACCCCAACCCGAAAATCCCAAATTAGAGTTCTAGGGTTTTATCGTCGACTTTCGATCATTCCTCTGTTCGGCGAAAAATGTTTCCAGGAATGTTTATGCGTAAGCCTGACAAGGCTGCTGCACTCAAGCAGCTCCGATCACACGTTGCTATGTTCGGCGTATGGGTTGCTGTAATTCGAGTTACCCCCTATGTTCTTCACTACCTTTCCGACGAGAAAGAAGAACTCAAGCTCGACTTTTAG

mRNA sequence

ATGGAAGAGAAGGGGGGTTTATTTGGATCCTTTGACTCGTTGTTAGGTCCTCCATGCGATTTGTCGACGAGGACCTTGGGAATGTTTATGCGTAAGCCTGACAAGGCTGCTGCACTCAAGCAGCTCCGATCACACGTTGCTATGTTCGGCGTATGGGTTGCTGTAATTCGAGTTACCCCCTATGTTCTTCACTACCTTTCCGACGAGAAAGAAGAACTCAAGCTCGACTTTTAG

Coding sequence (CDS)

ATGGAAGAGAAGGGGGGTTTATTTGGATCCTTTGACTCGTTGTTAGGTCCTCCATGCGATTTGTCGACGAGGACCTTGGGAATGTTTATGCGTAAGCCTGACAAGGCTGCTGCACTCAAGCAGCTCCGATCACACGTTGCTATGTTCGGCGTATGGGTTGCTGTAATTCGAGTTACCCCCTATGTTCTTCACTACCTTTCCGACGAGAAAGAAGAACTCAAGCTCGACTTTTAG

Protein sequence

MEEKGGLFGSFDSLLGPPCDLSTRTLGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF

Homology

[Close]

BLAST of Carg23629 vs. NCBI nr
Match: KAG7010951.1 (Mitochondrial import receptor subunit TOM6-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 160.2 bits (404), Expect = 7.0e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MEEKGGLFGSFDSLLGPPCDLSTRTLGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTP 60
          MEEKGGLFGSFDSLLGPPCDLSTRTLGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTP
Sbjct: 1  MEEKGGLFGSFDSLLGPPCDLSTRTLGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTP 60

Query: 61 YVLHYLSDEKEELKLDF 78
          YVLHYLSDEKEELKLDF
Sbjct: 61 YVLHYLSDEKEELKLDF 77

[Close]

BLAST of Carg23629 vs. NCBI nr
Match: XP_004154290.1 (mitochondrial import receptor subunit TOM6 homolog [Cucumis sativus] >XP_008459248.1 PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Cucumis melo] >XP_011649217.1 mitochondrial import receptor subunit TOM6 homolog [Cucumis sativus] >XP_022943932.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita moschata] >XP_022943933.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita moschata] >XP_022948071.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita moschata] >XP_022986654.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita maxima] >XP_022986655.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita maxima] >XP_022986656.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita maxima] >XP_023007537.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita maxima] >XP_023511843.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita pepo subsp. pepo] >XP_023511844.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita pepo subsp. pepo] >XP_023532551.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita pepo subsp. pepo] >XP_038900853.1 mitochondrial import receptor subunit TOM6 homolog [Benincasa hispida] >KAA0045963.1 Mitochondrial import receptor subunit TOM6 -like protein [Cucumis melo var. makuwa] >KGN61761.1 hypothetical protein Csa_006573 [Cucumis sativus] >TYK13622.1 Mitochondrial import receptor subunit TOM6 -like protein [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 1.6e-19
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 27 GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 4  GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

[Close]

BLAST of Carg23629 vs. NCBI nr
Match: XP_022148517.1 (mitochondrial import receptor subunit TOM6 homolog [Momordica charantia])

HSP 1 Score: 104.4 bits (259), Expect = 4.6e-19
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 27 GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKL+F
Sbjct: 4  GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLEF 54

[Close]

BLAST of Carg23629 vs. NCBI nr
Match: MBA0872591.1 (hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 100.5 bits (249), Expect = 6.6e-18
Identity = 45/51 (88.24%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 27 GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          GMFMRKPDKAAALKQL++HVAMFGVWVAV+RVTPY+LHYLSDEKEELK++F
Sbjct: 4  GMFMRKPDKAAALKQLKTHVAMFGVWVAVVRVTPYILHYLSDEKEELKIEF 54

[Close]

BLAST of Carg23629 vs. NCBI nr
Match: MBA0815198.1 (hypothetical protein [Gossypium harknessii])

HSP 1 Score: 100.5 bits (249), Expect = 6.6e-18
Identity = 45/51 (88.24%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 27  GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
           GMFMRKPDKAAALKQL++HVAMFGVWVAV+RVTPY+LHYLSDEKEELK++F
Sbjct: 93  GMFMRKPDKAAALKQLKAHVAMFGVWVAVVRVTPYILHYLSDEKEELKIEF 143

[Close]

BLAST of Carg23629 vs. ExPASy Swiss-Prot
Match: Q9XIA7 (Mitochondrial import receptor subunit TOM6 homolog OS=Arabidopsis thaliana OX=3702 GN=TOM6 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.7e-16
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 27 GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          GMFMRKPDKA ALKQLR+HVA+FG WV +IR  PYVL Y SD K+ELK+DF
Sbjct: 4  GMFMRKPDKAEALKQLRTHVALFGSWVVIIRAAPYVLSYFSDSKDELKIDF 54

[Close]

BLAST of Carg23629 vs. ExPASy TrEMBL
Match: A0A6J1JEM5 (mitochondrial import receptor subunit TOM6 homolog OS=Cucurbita maxima OX=3661 GN=LOC111484330 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.6e-20
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 27 GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 4  GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

[Close]

BLAST of Carg23629 vs. ExPASy TrEMBL
Match: A0A6J1FXI3 (mitochondrial import receptor subunit TOM6 homolog OS=Cucurbita moschata OX=3662 GN=LOC111448504 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.6e-20
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 27 GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 4  GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

[Close]

BLAST of Carg23629 vs. ExPASy TrEMBL
Match: A0A5A7TQX5 (Mitochondrial import receptor subunit TOM6-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G001260 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.6e-20
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 27 GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 4  GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

[Close]

BLAST of Carg23629 vs. ExPASy TrEMBL
Match: A0A0A0LP29 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G238770 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.6e-20
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 27 GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 4  GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

[Close]

BLAST of Carg23629 vs. ExPASy TrEMBL
Match: A0A1S3C9U8 (mitochondrial import receptor subunit TOM6 homolog OS=Cucumis melo OX=3656 GN=LOC103498428 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.6e-20
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 27 GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 4  GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

[Close]

BLAST of Carg23629 vs. TAIR 10
Match: AT1G49410.1 (translocase of the outer mitochondrial membrane 6 )

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-17
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 27 GMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 78
          GMFMRKPDKA ALKQLR+HVA+FG WV +IR  PYVL Y SD K+ELK+DF
Sbjct: 4  GMFMRKPDKAEALKQLRTHVALFGSWVVIIRAAPYVLSYFSDSKDELKIDF 54

The following BLAST results are available for this feature:

BLAST of Carg23629 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010951.1	7.0e-36	100.00	Mitochondrial import receptor subunit TOM6-like protein, partial [Cucurbita argy...	[more]
XP_004154290.1	1.6e-19	100.00	mitochondrial import receptor subunit TOM6 homolog [Cucumis sativus] >XP_0084592...	[more]
XP_022148517.1	4.6e-19	98.04	mitochondrial import receptor subunit TOM6 homolog [Momordica charantia]	[more]
MBA0872591.1	6.6e-18	88.24	hypothetical protein [Gossypium schwendimanii]	[more]
MBA0815198.1	6.6e-18	88.24	hypothetical protein [Gossypium harknessii]	[more]

BLAST of Carg23629 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XIA7	3.7e-16	74.51	Mitochondrial import receptor subunit TOM6 homolog OS=Arabidopsis thaliana OX=37...	[more]

BLAST of Carg23629 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JEM5	7.6e-20	100.00	mitochondrial import receptor subunit TOM6 homolog OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1FXI3	7.6e-20	100.00	mitochondrial import receptor subunit TOM6 homolog OS=Cucurbita moschata OX=3662...	[more]
A0A5A7TQX5	7.6e-20	100.00	Mitochondrial import receptor subunit TOM6-like protein OS=Cucumis melo var. mak...	[more]
A0A0A0LP29	7.6e-20	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G238770 PE=4 SV=1	[more]
A0A1S3C9U8	7.6e-20	100.00	mitochondrial import receptor subunit TOM6 homolog OS=Cucumis melo OX=3656 GN=LO...	[more]

BLAST of Carg23629 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49410.1	2.7e-17	74.51	translocase of the outer mitochondrial membrane 6	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR034554	Mitochondrial import receptor subunit TOM6 homologue, plants	PANTHER	PTHR35999	MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM6 HOMOLOG	coord: 26..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23629-RA	Carg23629-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005742	mitochondrial outer membrane translocase complex