Carg23622 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg23622
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	B3 domain-containing transcription factor VRN1-like
Location	Carg_Chr20: 4484941 .. 4487088 (-)
RNA-Seq Expression	Carg23622
Synteny	Carg23622

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGACCTCTCCAATTGGAAAGGAGAGTTGAAAGCTATAGTGATGAAATAAGGGGAGCATTTACGCTAAGTCACAACCATGTTAATTATAGCGTGGGAGTTCATTTTTTGGAAGATTCTTATATTTCTTTCTTGTCAGATGCTCTCCAGCAGTAGGCTCTTATAAAATTCTTCGAAAGATGTTTTGTTTCATTTTGAAAGGTAGACCTCCATTGGTGTGTGAGAATAAAAGCTTTGGATCTTTTGGGGTTGTTTGTTTCTTATAATGCAGTCTATGCCGTCATTTACTTTTACTTGGTTCTTTTATGCTGGGCTTTCCTTTCTTTGCATTGCCCTTTTGTTCATCATTTTTTTTTATCTCTGATGGAAAATATCTGTGTGGTTGGCTACGGAAACTTTATAGAACTCCTTTGTGTCTTTAATCATAAATCAAGTGTTATATTCCTTTTTCAATAAGGCAACATTTCCCTTTGAATCAGCCTGCTGAATGATCATACCACTGCAGTCGTCTTGTCAGATATGTTCTATTTGTTGGAATGGAGTTAAGTTTCTATATTATCAATCATTTGTGTGACCCCCATCACTGGTCAATATTTACAGAGAATCCCAGAAACTTTTGTCAGGATGATCAGGGATGAGCTTTCTGGAGTTGCTACCCTTACTGTTCCCGATGGCCATGTTTGGCGTGTGGGTTTGAGGAAAGTCGATAACAAATTTTGGTTTGAAGATGGTTGGCATGGATTTCTTGAGCATTACTCCATACGGGTTGGGTACTTGTTAGTATTCAGATACGAGGGAAACTCGGCGTTCTGTGTCTTTATCTTTAATCTTAATACATCTGAAATAAACTACCAATCTGCTGCACTCGGTGGTAACCAAAGGAATAATTACAGCATTCAAAACAGAATCTTTGAAGAATTGGAGGATTATGACATTCCTGAAGCCATTCCTTCCAATCAGTCCATGAATTCTGGTTCTTTGCGAAATAAGCTATTTGGTGATGAATGGAATCCGCACCAATCAAAATCTGCAAGTACGTTGCAAGCCGAGTATTTATCTACTCGTGATATTGGGGTTCAGTTTAGTGCTATGGAGGTTAAAAAATCTGCAGATGAGGTGAGATTTCAGAATTTGGGTGATGATGTACACAGAATTAAAAAGAGTGGAGGCAAAAAGCGAAAACTTGATTCTAGTAAGCTCCCGTCGCATCGCTTGACATTTTAGCAATGTAAATGTTTGAATTACCTTACCCGTAATTTTCGATCTGCAGGCGAGCACCATCCATCATCTGCTCATAGTGAAGATTTAGGAGACATTCGCTTTAGATTTTATGAAAGTGCCTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAGCTATCAACTCTGCAAAAGCTTTCGAGCCCGGTAATCCGTTCTGCAGGGTCGTCTTGCGACCATCGTATCTGTATAGAGGTTGTATAATGGTAAGATATTTGGGTTGCTGAAATATATAAATGGATGCTTTTAAATTGAGTTATGCAAGCTCTAACAATGGTAGTCTGCACTCTCTTTTACAGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCGGGATTCATCAAACTTCAGACACCGGACGGGAGACAGTGGCCGGTCCGATGTCTTTATAAAGTTGGTAGAGCAAAGTTAAGTCAGGGATGGTATGAGTTTTGCCTGGAAAATAATTTAGGGGAGGGGGACGTTTGTGTGTTCGAGCTTCTCAGGATGAGAGAAATCGTGCTCAAAGTTACCATGTTTCGTGTCATGGAAGAAGGCGGACGAATGGCTAACCCGAATCCTACCAGCACTATGAATCCTCCTCCGCTGCGAAGTGTTACCCAGATTAAGCTGATCAGAAACTAATACACTCCATATTTCCAGGTTACCCTACTGTATCAAACCTCTTTCTTTCTTTCTTTCTTTCTTTGTGGTAGCCTGTTGTTTCTGATCTGTTCTTGTGGAATTAGCTGTTGTTTGATGTTCATAATCTTTCCAGGTTGACAAAAAAAAGGATCCATTTAGAGTTTACGTTCCAAAAAGCTGTATTGACTTTAGTTGTATATAGATTTTCAAATTTTTGTTGATATCAATGGAGACCGTGTTTGTTTTT

mRNA sequence

AAAGACCTCTCCAATTGGAAAGGAGAGTTGAAAGCTATAGTGATGAAATAAGGGGAGCATTTACGCTAAGTCACAACCATGTTAATTATAGCGTGGGAGTTCATTTTTTGGAAGATTCTTATATTTCTTTCTTGTCAGATGCTCTCCAGCAGTAGGCTCTTATAAAATTCTTCGAAAGATGTTTTGTTTCATTTTGAAAGGTAGACCTCCATTGGTGTGTGAGAATAAAAGCTTTGGATCTTTTGGGGTTGTTTGTTTCTTATAATGCAGTCTATGCCGTCATTTACTTTTACTTGGTTCTTTTATGCTGGGCTTTCCTTTCTTTGCATTGCCCTTTTGTTCATCATTTTTTTTTATCTCTGATGGAAAATATCTGTGTGGTTGGCTACGGAAACTTTATAGAACTCCTTTGTGTCTTTAATCATAAATCAAGTGTTATATTCCTTTTTCAATAAGGCAACATTTCCCTTTGAATCAGCCTGCTGAATGATCATACCACTGCAGTCGTCTTGTCAGATATGTTCTATTTGTTGGAATGGAGTTAAGTTTCTATATTATCAATCATTTGTGTGACCCCCATCACTGGTCAATATTTACAGAGAATCCCAGAAACTTTTGTCAGGATGATCAGGGATGAGCTTTCTGGAGTTGCTACCCTTACTGTTCCCGATGGCCATGTTTGGCGTGTGGGTTTGAGGAAAGTCGATAACAAATTTTGGTTTGAAGATGGTTGGCATGGATTTCTTGAGCATTACTCCATACGGGTTGGGTACTTGTTAGTATTCAGATACGAGGGAAACTCGGCGTTCTGTGTCTTTATCTTTAATCTTAATACATCTGAAATAAACTACCAATCTGCTGCACTCGGTGGTAACCAAAGGAATAATTACAGCATTCAAAACAGAATCTTTGAAGAATTGGAGGATTATGACATTCCTGAAGCCATTCCTTCCAATCAGTCCATGAATTCTGGTTCTTTGCGAAATAAGCTATTTGGTGATGAATGGAATCCGCACCAATCAAAATCTGCAAGTACGTTGCAAGCCGAGTATTTATCTACTCGTGATATTGGGGTTCAGTTTAGTGCTATGGAGGTTAAAAAATCTGCAGATGAGGTGAGATTTCAGAATTTGGGTGATGATGTACACAGAATTAAAAAGAGTGGAGGCAAAAAGCGAAAACTTGATTCTAGCGAGCACCATCCATCATCTGCTCATAGTGAAGATTTAGGAGACATTCGCTTTAGATTTTATGAAAGTGCCTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAGCTATCAACTCTGCAAAAGCTTTCGAGCCCGGTAATCCGTTCTGCAGGGTCGTCTTGCGACCATCGTATCTGTATAGAGGTTGTATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCGGGATTCATCAAACTTCAGACACCGGACGGGAGACAGTGGCCGGTCCGATGTCTTTATAAAGTTGGTAGAGCAAAGTTAAGTCAGGGATGGTATGAGTTTTGCCTGGAAAATAATTTAGGGGAGGGGGACGTTTGTGTGTTCGAGCTTCTCAGGATGAGAGAAATCGTGCTCAAAGTTACCATGTTTCGTGTCATGGAAGAAGGCGGACGAATGGCTAACCCGAATCCTACCAGCACTATGAATCCTCCTCCGCTGCGAAGTGTTACCCAGATTAAGCTGATCAGAAACTAATACACTCCATATTTCCAGGTTACCCTACTGTATCAAACCTCTTTCTTTCTTTCTTTCTTTCTTTGTGGTAGCCTGTTGTTTCTGATCTGTTCTTGTGGAATTAGCTGTTGTTTGATGTTCATAATCTTTCCAGGTTGACAAAAAAAAGGATCCATTTAGAGTTTACGTTCCAAAAAGCTGTATTGACTTTAGTTGTATATAGATTTTCAAATTTTTGTTGATATCAATGGAGACCGTGTTTGTTTTT

Coding sequence (CDS)

ATGATCAGGGATGAGCTTTCTGGAGTTGCTACCCTTACTGTTCCCGATGGCCATGTTTGGCGTGTGGGTTTGAGGAAAGTCGATAACAAATTTTGGTTTGAAGATGGTTGGCATGGATTTCTTGAGCATTACTCCATACGGGTTGGGTACTTGTTAGTATTCAGATACGAGGGAAACTCGGCGTTCTGTGTCTTTATCTTTAATCTTAATACATCTGAAATAAACTACCAATCTGCTGCACTCGGTGGTAACCAAAGGAATAATTACAGCATTCAAAACAGAATCTTTGAAGAATTGGAGGATTATGACATTCCTGAAGCCATTCCTTCCAATCAGTCCATGAATTCTGGTTCTTTGCGAAATAAGCTATTTGGTGATGAATGGAATCCGCACCAATCAAAATCTGCAAGTACGTTGCAAGCCGAGTATTTATCTACTCGTGATATTGGGGTTCAGTTTAGTGCTATGGAGGTTAAAAAATCTGCAGATGAGGTGAGATTTCAGAATTTGGGTGATGATGTACACAGAATTAAAAAGAGTGGAGGCAAAAAGCGAAAACTTGATTCTAGCGAGCACCATCCATCATCTGCTCATAGTGAAGATTTAGGAGACATTCGCTTTAGATTTTATGAAAGTGCCTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAGCTATCAACTCTGCAAAAGCTTTCGAGCCCGGTAATCCGTTCTGCAGGGTCGTCTTGCGACCATCGTATCTGTATAGAGGTTGTATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCGGGATTCATCAAACTTCAGACACCGGACGGGAGACAGTGGCCGGTCCGATGTCTTTATAAAGTTGGTAGAGCAAAGTTAAGTCAGGGATGGTATGAGTTTTGCCTGGAAAATAATTTAGGGGAGGGGGACGTTTGTGTGTTCGAGCTTCTCAGGATGAGAGAAATCGTGCTCAAAGTTACCATGTTTCGTGTCATGGAAGAAGGCGGACGAATGGCTAACCCGAATCCTACCAGCACTATGAATCCTCCTCCGCTGCGAAGTGTTACCCAGATTAAGCTGATCAGAAACTAA

Protein sequence

MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNSAFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLRNKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKSGGKKRKLDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNPTSTMNPPPLRSVTQIKLIRN

Homology

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BLAST of Carg23622 vs. NCBI nr
Match: KAG7010958.1 (B3 domain-containing transcription factor VRN1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 753.8 bits (1945), Expect = 6.8e-214
Identity = 368/368 (100.00%), Postives = 368/368 (100.00%), Query Frame = 0


Query: 1   MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNS 60
           MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNS
Sbjct: 1   MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNS 60

Query: 61  AFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLR 120
           AFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLR
Sbjct: 61  AFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLR 120

Query: 121 NKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKS 180
           NKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKS
Sbjct: 121 NKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKS 180

Query: 181 GGKKRKLDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNP 240
           GGKKRKLDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNP
Sbjct: 181 GGKKRKLDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNP 240

Query: 241 FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ 300
           FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ
Sbjct: 241 FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ 300

Query: 301 GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNPTSTMNPPPLRSV 360
           GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNPTSTMNPPPLRSV
Sbjct: 301 GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNPTSTMNPPPLRSV 360

Query: 361 TQIKLIRN 369
           TQIKLIRN
Sbjct: 361 TQIKLIRN 368

[Close]

BLAST of Carg23622 vs. NCBI nr
Match: KAG6571147.1 (B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 753.8 bits (1945), Expect = 6.8e-214
Identity = 368/368 (100.00%), Postives = 368/368 (100.00%), Query Frame = 0


Query: 1   MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNS 60
           MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNS
Sbjct: 44  MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNS 103

Query: 61  AFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLR 120
           AFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLR
Sbjct: 104 AFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLR 163

Query: 121 NKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKS 180
           NKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKS
Sbjct: 164 NKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKS 223

Query: 181 GGKKRKLDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNP 240
           GGKKRKLDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNP
Sbjct: 224 GGKKRKLDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNP 283

Query: 241 FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ 300
           FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ
Sbjct: 284 FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ 343

Query: 301 GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNPTSTMNPPPLRSV 360
           GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNPTSTMNPPPLRSV
Sbjct: 344 GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNPTSTMNPPPLRSV 403

Query: 361 TQIKLIRN 369
           TQIKLIRN
Sbjct: 404 TQIKLIRN 411

[Close]

BLAST of Carg23622 vs. NCBI nr
Match: XP_023512692.1 (B3 domain-containing transcription factor VRN1-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023521757.1 B3 domain-containing transcription factor VRN1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 752.3 bits (1941), Expect = 2.0e-213
Identity = 367/368 (99.73%), Postives = 367/368 (99.73%), Query Frame = 0


Query: 1   MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNS 60
           MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNS
Sbjct: 1   MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNS 60

Query: 61  AFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLR 120
           AFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLR
Sbjct: 61  AFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLR 120

Query: 121 NKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKS 180
           NKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKS
Sbjct: 121 NKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKS 180

Query: 181 GGKKRKLDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNP 240
           GGKKRKLDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNP
Sbjct: 181 GGKKRKLDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNP 240

Query: 241 FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ 300
           FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ
Sbjct: 241 FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ 300

Query: 301 GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNPTSTMNPPPLRSV 360
           GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNPT TMNPPPLRSV
Sbjct: 301 GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNPTGTMNPPPLRSV 360

Query: 361 TQIKLIRN 369
           TQIKLIRN
Sbjct: 361 TQIKLIRN 368

[Close]

BLAST of Carg23622 vs. NCBI nr
Match: XP_023512691.1 (B3 domain-containing transcription factor VRN1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023521756.1 B3 domain-containing transcription factor VRN1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 752.3 bits (1941), Expect = 2.0e-213
Identity = 367/368 (99.73%), Postives = 367/368 (99.73%), Query Frame = 0


Query: 1   MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNS 60
           MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNS
Sbjct: 44  MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNS 103

Query: 61  AFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLR 120
           AFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLR
Sbjct: 104 AFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLR 163

Query: 121 NKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKS 180
           NKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKS
Sbjct: 164 NKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKS 223

Query: 181 GGKKRKLDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNP 240
           GGKKRKLDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNP
Sbjct: 224 GGKKRKLDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNP 283

Query: 241 FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ 300
           FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ
Sbjct: 284 FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ 343

Query: 301 GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNPTSTMNPPPLRSV 360
           GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNPT TMNPPPLRSV
Sbjct: 344 GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNPTGTMNPPPLRSV 403

Query: 361 TQIKLIRN 369
           TQIKLIRN
Sbjct: 404 TQIKLIRN 411

[Close]

BLAST of Carg23622 vs. NCBI nr
Match: XP_022943958.1 (B3 domain-containing transcription factor VRN1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 749.6 bits (1934), Expect = 1.3e-212
Identity = 366/368 (99.46%), Postives = 366/368 (99.46%), Query Frame = 0


Query: 1   MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNS 60
           MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNS
Sbjct: 1   MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNS 60

Query: 61  AFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLR 120
           AFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLR
Sbjct: 61  AFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLR 120

Query: 121 NKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKS 180
           NKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKS
Sbjct: 121 NKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKS 180

Query: 181 GGKKRKLDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNP 240
           GGKKRK DSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNP
Sbjct: 181 GGKKRKPDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNP 240

Query: 241 FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ 300
           FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ
Sbjct: 241 FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ 300

Query: 301 GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNPTSTMNPPPLRSV 360
           GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNPT TMNPPPLRSV
Sbjct: 301 GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNPTGTMNPPPLRSV 360

Query: 361 TQIKLIRN 369
           TQIKLIRN
Sbjct: 361 TQIKLIRN 368

[Close]

BLAST of Carg23622 vs. ExPASy Swiss-Prot
Match: Q8L3W1 (B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 GN=VRN1 PE=1 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 1.7e-95
Identity = 195/336 (58.04%), Postives = 228/336 (67.86%), Query Frame = 0


Query: 3   RDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNSAF 62
           +DELS    LTVPDGHVWRVGLRK DNK WF+DGW  F++ YSIR+GYLL+FRYEGNSAF
Sbjct: 31  KDELSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRIGYLLIFRYEGNSAF 90

Query: 63  CVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLRNK 122
            V+IFNL+ SEINY S  L  +  N++  + R+FE+LED D     PS  S+    L   
Sbjct: 91  SVYIFNLSHSEINYHSTGLMDSAHNHFK-RARLFEDLEDEDAEVIFPS--SVYPSPL--- 150

Query: 123 LFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKSGG 182
               E     +K  ++   + L T  +            A+E           +I K  G
Sbjct: 151 ---PESTVPANKGYASSAIQTLFTGPV-----------KAEE------PTPTPKIPKKRG 210

Query: 183 KKRKLDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNPFC 242
           +K+K    E   SSA  +D  + R +FYESASARKRTVTAEERERAIN+AK FEP NPF 
Sbjct: 211 RKKKNADPEEINSSAPRDDDPENRSKFYESASARKRTVTAEERERAINAAKTFEPTNPFF 270

Query: 243 RVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGW 302
           RVVLRPSYLYRGCIMYLPS FAEK LSG+SGFIK+Q  + +QWPVRCLYK GRAK SQGW
Sbjct: 271 RVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLAE-KQWPVRCLYKAGRAKFSQGW 330

Query: 303 YEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVME 339
           YEF LENNLGEGDVCVFELLR R+ VLKVT FRV E
Sbjct: 331 YEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRVNE 339

[Close]

BLAST of Carg23622 vs. ExPASy Swiss-Prot
Match: Q9XIB5 (B3 domain-containing protein REM19 OS=Arabidopsis thaliana OX=3702 GN=REM19 PE=1 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.0e-58
Identity = 115/171 (67.25%), Postives = 135/171 (78.95%), Query Frame = 0


Query: 168 QNLGDDVHRIKKSGGKKRKLDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERER 227
           ++  ++  ++ K  G+K+K  + E   SS    D  + R +FYESASARKRTVTAEERER
Sbjct: 55  ESKAEETPKVLKKRGRKKKNPNPEEVNSSTPGGDDSENRSKFYESASARKRTVTAEERER 114

Query: 228 AINSAKAFEPGNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPV 287
           A+N+AK FEP NP+ RVVLRPSYLYRGCIMYLPS FAEK LSG+SGFIKLQ  + +QWPV
Sbjct: 115 AVNAAKTFEPTNPYFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKLQLGE-KQWPV 174

Query: 288 RCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVME 339
           RCLYK GRAK SQGWYEF LENN+GEGDVCVFELLR R+ VL+VT FRV E
Sbjct: 175 RCLYKAGRAKFSQGWYEFTLENNIGEGDVCVFELLRTRDFVLEVTAFRVNE 224

[Close]

BLAST of Carg23622 vs. ExPASy Swiss-Prot
Match: Q2QMT7 (B3 domain-containing protein Os12g0591400 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0591300 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.8e-11
Identity = 85/325 (26.15%), Postives = 130/325 (40.00%), Query Frame = 0


Query: 6   LSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNSAFCVF 65
           +SGVA L VPDG  + V + K  N+  F  GW  F   Y +  G +L F Y GNS F V 
Sbjct: 226 ISGVAKLEVPDGKTYDVEISKEHNELVFRSGWEVFAIAYELEQGDILAFGYSGNSHFKVQ 285

Query: 66  IFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLRNKLFG 125
           IFN +  E       +  +  ++   Q+   E +         PS   M+  +    L  
Sbjct: 286 IFNPSNCEKELSCVVMNRSISDDNHRQSPRRERMNK-------PSTTCMDCITNHYWLHM 345

Query: 126 DEWNPHQSK---SASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGD-----DVHRI 185
           D+   +  K   S S ++ E      I  +F+A    K  ++VR +   D     D+   
Sbjct: 346 DDRERYFFKVMMSVSDIKDELA----IPKKFAANVRGKIPEQVRLEVSDDVPSSEDIKDP 405

Query: 186 KKSGGKKRKLDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEP 245
             SGG ++   S    P               Y   SA++  V A E        K  +P
Sbjct: 406 MSSGGLQKSKKSCYVLP-------------MLYNMTSAQESEVLALE--------KKIQP 465

Query: 246 GNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKL-QTPDGRQWPVRC-LYKVGR 305
             P     +  + +  G +++    +A + L   +  IKL Q+   + W +   +     
Sbjct: 466 QIPLYITAMDKTSVASGSLVFCKD-YAVRYLLDQNRTIKLCQSGGSKTWDISLDMDTDDL 517

Query: 306 AKLSQGWYEFCLENNLGEGDVCVFE 321
             LS GW +F   N L EGD+CVFE
Sbjct: 526 YALSTGWLDFFRCNLLQEGDICVFE 517

[Close]

BLAST of Carg23622 vs. ExPASy Swiss-Prot
Match: Q9ZSH7 (B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana OX=3702 GN=At4g01580 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.3e-10
Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 5   ELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNSAFCV 64
           +LS V TL  P G+   + L+++  + WF +GW  F E +SI  G+ L+F Y+ NS+F V
Sbjct: 57  KLSEVVTLVTPAGYKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKKNSSFRV 116

Query: 65  FIFNLNTSEINY 77
            IFN +  E NY
Sbjct: 117 IIFNASACETNY 128

[Close]

BLAST of Carg23622 vs. ExPASy Swiss-Prot
Match: Q84R27 (B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana OX=3702 GN=At3g18960 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.9e-09
Identity = 29/72 (40.28%), Postives = 43/72 (59.72%), Query Frame = 0


Query: 5   ELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNSAFCV 64
           +LS V TL  P G    + L+++  + WF +GW  F E +SI  G+ L+F Y+ NS+F V
Sbjct: 57  KLSEVVTLETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRV 116

Query: 65  FIFNLNTSEINY 77
            IFN++  E  Y
Sbjct: 117 IIFNVSACETKY 128

[Close]

BLAST of Carg23622 vs. ExPASy TrEMBL
Match: A0A6J1FXJ1 (B3 domain-containing transcription factor VRN1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448529 PE=4 SV=1)

HSP 1 Score: 749.6 bits (1934), Expect = 6.2e-213
Identity = 366/368 (99.46%), Postives = 366/368 (99.46%), Query Frame = 0


Query: 1   MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNS 60
           MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNS
Sbjct: 1   MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNS 60

Query: 61  AFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLR 120
           AFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLR
Sbjct: 61  AFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLR 120

Query: 121 NKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKS 180
           NKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKS
Sbjct: 121 NKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKS 180

Query: 181 GGKKRKLDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNP 240
           GGKKRK DSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNP
Sbjct: 181 GGKKRKPDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNP 240

Query: 241 FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ 300
           FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ
Sbjct: 241 FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ 300

Query: 301 GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNPTSTMNPPPLRSV 360
           GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNPT TMNPPPLRSV
Sbjct: 301 GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNPTGTMNPPPLRSV 360

Query: 361 TQIKLIRN 369
           TQIKLIRN
Sbjct: 361 TQIKLIRN 368

[Close]

BLAST of Carg23622 vs. ExPASy TrEMBL
Match: A0A6J1FUG6 (B3 domain-containing transcription factor VRN1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448529 PE=4 SV=1)

HSP 1 Score: 749.6 bits (1934), Expect = 6.2e-213
Identity = 366/368 (99.46%), Postives = 366/368 (99.46%), Query Frame = 0


Query: 1   MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNS 60
           MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNS
Sbjct: 44  MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNS 103

Query: 61  AFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLR 120
           AFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLR
Sbjct: 104 AFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLR 163

Query: 121 NKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKS 180
           NKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKS
Sbjct: 164 NKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKS 223

Query: 181 GGKKRKLDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNP 240
           GGKKRK DSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNP
Sbjct: 224 GGKKRKPDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNP 283

Query: 241 FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ 300
           FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ
Sbjct: 284 FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ 343

Query: 301 GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNPTSTMNPPPLRSV 360
           GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNPT TMNPPPLRSV
Sbjct: 344 GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNPTGTMNPPPLRSV 403

Query: 361 TQIKLIRN 369
           TQIKLIRN
Sbjct: 404 TQIKLIRN 411

[Close]

BLAST of Carg23622 vs. ExPASy TrEMBL
Match: A0A6J1JGU7 (B3 domain-containing transcription factor VRN1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484254 PE=4 SV=1)

HSP 1 Score: 744.6 bits (1921), Expect = 2.0e-211
Identity = 364/368 (98.91%), Postives = 365/368 (99.18%), Query Frame = 0


Query: 1   MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNS 60
           MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNS
Sbjct: 1   MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNS 60

Query: 61  AFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLR 120
           AFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPS QSMNSGSLR
Sbjct: 61  AFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSIQSMNSGSLR 120

Query: 121 NKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKS 180
           NKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKS
Sbjct: 121 NKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKS 180

Query: 181 GGKKRKLDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNP 240
           GGKKRKLDSS+HHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNP
Sbjct: 181 GGKKRKLDSSDHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNP 240

Query: 241 FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ 300
           FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ
Sbjct: 241 FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ 300

Query: 301 GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNPTSTMNPPPLRSV 360
           GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPN T TMNPPPLRSV
Sbjct: 301 GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNSTGTMNPPPLRSV 360

Query: 361 TQIKLIRN 369
           TQIKLIRN
Sbjct: 361 TQIKLIRN 368

[Close]

BLAST of Carg23622 vs. ExPASy TrEMBL
Match: A0A6J1J7V4 (B3 domain-containing transcription factor VRN1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484254 PE=4 SV=1)

HSP 1 Score: 744.6 bits (1921), Expect = 2.0e-211
Identity = 364/368 (98.91%), Postives = 365/368 (99.18%), Query Frame = 0


Query: 1   MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNS 60
           MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNS
Sbjct: 44  MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNS 103

Query: 61  AFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLR 120
           AFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPS QSMNSGSLR
Sbjct: 104 AFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSIQSMNSGSLR 163

Query: 121 NKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKS 180
           NKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKS
Sbjct: 164 NKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKS 223

Query: 181 GGKKRKLDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNP 240
           GGKKRKLDSS+HHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNP
Sbjct: 224 GGKKRKLDSSDHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNP 283

Query: 241 FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ 300
           FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ
Sbjct: 284 FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ 343

Query: 301 GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNPTSTMNPPPLRSV 360
           GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPN T TMNPPPLRSV
Sbjct: 344 GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNSTGTMNPPPLRSV 403

Query: 361 TQIKLIRN 369
           TQIKLIRN
Sbjct: 404 TQIKLIRN 411

[Close]

BLAST of Carg23622 vs. ExPASy TrEMBL
Match: A0A6J1D3D4 (B3 domain-containing transcription factor VRN1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111017227 PE=4 SV=1)

HSP 1 Score: 711.1 bits (1834), Expect = 2.5e-201
Identity = 344/368 (93.48%), Postives = 356/368 (96.74%), Query Frame = 0


Query: 1   MIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNS 60
           MIRDELS VATLTVPDGHVWRVGLRK DNKFWFEDGWHGFLEHYSIRVGY LVFRYEGNS
Sbjct: 18  MIRDELSAVATLTVPDGHVWRVGLRKADNKFWFEDGWHGFLEHYSIRVGYFLVFRYEGNS 77

Query: 61  AFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLR 120
           +FCVF+FNLNTSEINYQSAALGGNQRNNYSIQNRIFEE+EDYDIPE IPSNQSMNSGSLR
Sbjct: 78  SFCVFMFNLNTSEINYQSAALGGNQRNNYSIQNRIFEEMEDYDIPEGIPSNQSMNSGSLR 137

Query: 121 NKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKS 180
           NKLFGDEWN HQSK+ASTLQAEYLSTRDIGVQFSA+EVKKSADEVRFQNLGDDVHR+KKS
Sbjct: 138 NKLFGDEWNLHQSKAASTLQAEYLSTRDIGVQFSAVEVKKSADEVRFQNLGDDVHRVKKS 197

Query: 181 GGKKRKLDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNP 240
           G KKRK+DSSEHHPS+ HSEDLGDIRFRFYESASARKRTVTAEERERAIN+AKAFEP NP
Sbjct: 198 GSKKRKIDSSEHHPST-HSEDLGDIRFRFYESASARKRTVTAEERERAINAAKAFEPANP 257

Query: 241 FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ 300
           FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ
Sbjct: 258 FCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQ 317

Query: 301 GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNPTSTMNPPPLRSV 360
           GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRV+E+ GR+ NPNP S MNPPPLRSV
Sbjct: 318 GWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVIEDAGRLVNPNPASMMNPPPLRSV 377

Query: 361 TQIKLIRN 369
           TQIKLIRN
Sbjct: 378 TQIKLIRN 384

[Close]

BLAST of Carg23622 vs. TAIR 10
Match: AT3G18990.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 350.9 bits (899), Expect = 1.2e-96
Identity = 195/336 (58.04%), Postives = 228/336 (67.86%), Query Frame = 0


Query: 3   RDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNSAF 62
           +DELS    LTVPDGHVWRVGLRK DNK WF+DGW  F++ YSIR+GYLL+FRYEGNSAF
Sbjct: 31  KDELSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRIGYLLIFRYEGNSAF 90

Query: 63  CVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLRNK 122
            V+IFNL+ SEINY S  L  +  N++  + R+FE+LED D     PS  S+    L   
Sbjct: 91  SVYIFNLSHSEINYHSTGLMDSAHNHFK-RARLFEDLEDEDAEVIFPS--SVYPSPL--- 150

Query: 123 LFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKSGG 182
               E     +K  ++   + L T  +            A+E           +I K  G
Sbjct: 151 ---PESTVPANKGYASSAIQTLFTGPV-----------KAEE------PTPTPKIPKKRG 210

Query: 183 KKRKLDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNPFC 242
           +K+K    E   SSA  +D  + R +FYESASARKRTVTAEERERAIN+AK FEP NPF 
Sbjct: 211 RKKKNADPEEINSSAPRDDDPENRSKFYESASARKRTVTAEERERAINAAKTFEPTNPFF 270

Query: 243 RVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGW 302
           RVVLRPSYLYRGCIMYLPS FAEK LSG+SGFIK+Q  + +QWPVRCLYK GRAK SQGW
Sbjct: 271 RVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLAE-KQWPVRCLYKAGRAKFSQGW 330

Query: 303 YEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVME 339
           YEF LENNLGEGDVCVFELLR R+ VLKVT FRV E
Sbjct: 331 YEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRVNE 339

[Close]

BLAST of Carg23622 vs. TAIR 10
Match: AT1G49480.1 (related to vernalization1 1 )

HSP 1 Score: 228.8 bits (582), Expect = 7.1e-60
Identity = 115/171 (67.25%), Postives = 135/171 (78.95%), Query Frame = 0


Query: 168 QNLGDDVHRIKKSGGKKRKLDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERER 227
           ++  ++  ++ K  G+K+K  + E   SS    D  + R +FYESASARKRTVTAEERER
Sbjct: 55  ESKAEETPKVLKKRGRKKKNPNPEEVNSSTPGGDDSENRSKFYESASARKRTVTAEERER 114

Query: 228 AINSAKAFEPGNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPV 287
           A+N+AK FEP NP+ RVVLRPSYLYRGCIMYLPS FAEK LSG+SGFIKLQ  + +QWPV
Sbjct: 115 AVNAAKTFEPTNPYFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKLQLGE-KQWPV 174

Query: 288 RCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVME 339
           RCLYK GRAK SQGWYEF LENN+GEGDVCVFELLR R+ VL+VT FRV E
Sbjct: 175 RCLYKAGRAKFSQGWYEFTLENNIGEGDVCVFELLRTRDFVLEVTAFRVNE 224

[Close]

BLAST of Carg23622 vs. TAIR 10
Match: AT4G01580.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 68.2 bits (165), Expect = 1.6e-11
Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 5   ELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNSAFCV 64
           +LS V TL  P G+   + L+++  + WF +GW  F E +SI  G+ L+F Y+ NS+F V
Sbjct: 57  KLSEVVTLVTPAGYKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKKNSSFRV 116

Query: 65  FIFNLNTSEINY 77
            IFN +  E NY
Sbjct: 117 IIFNASACETNY 128

[Close]

BLAST of Carg23622 vs. TAIR 10
Match: AT3G18960.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-10
Identity = 29/72 (40.28%), Postives = 43/72 (59.72%), Query Frame = 0


Query: 5   ELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNSAFCV 64
           +LS V TL  P G    + L+++  + WF +GW  F E +SI  G+ L+F Y+ NS+F V
Sbjct: 57  KLSEVVTLETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRV 116

Query: 65  FIFNLNTSEINY 77
            IFN++  E  Y
Sbjct: 117 IIFNVSACETKY 128

[Close]

BLAST of Carg23622 vs. TAIR 10
Match: AT1G49475.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 62.8 bits (151), Expect = 6.8e-10
Identity = 28/72 (38.89%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 5   ELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNSAFCV 64
           +L+   TL  P G    + ++++ ++ WFE GW  F E +S+  G+ L F YEG+S F V
Sbjct: 60  KLTDNVTLQTPVGFKRSIRIKRIGDEVWFEKGWSEFAEAHSLSDGHFLFFHYEGDSCFRV 119

Query: 65  FIFNLNTSEINY 77
            IF+++ SEI Y
Sbjct: 120 VIFDVSASEIEY 131

The following BLAST results are available for this feature:

BLAST of Carg23622 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010958.1	6.8e-214	100.00	B3 domain-containing transcription factor VRN1 [Cucurbita argyrosperma subsp. ar...	[more]
KAG6571147.1	6.8e-214	100.00	B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma ...	[more]
XP_023512692.1	2.0e-213	99.73	B3 domain-containing transcription factor VRN1-like isoform X2 [Cucurbita pepo s...	[more]
XP_023512691.1	2.0e-213	99.73	B3 domain-containing transcription factor VRN1-like isoform X1 [Cucurbita pepo s...	[more]
XP_022943958.1	1.3e-212	99.46	B3 domain-containing transcription factor VRN1-like isoform X2 [Cucurbita moscha...	[more]

BLAST of Carg23622 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L3W1	1.7e-95	58.04	B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9XIB5	1.0e-58	67.25	B3 domain-containing protein REM19 OS=Arabidopsis thaliana OX=3702 GN=REM19 PE=1...	[more]
Q2QMT7	7.8e-11	26.15	B3 domain-containing protein Os12g0591400 OS=Oryza sativa subsp. japonica OX=399...	[more]
Q9ZSH7	2.3e-10	41.67	B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana OX=3702 GN=At4g01...	[more]
Q84R27	1.9e-09	40.28	B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana OX=3702 GN=At3g18...	[more]

BLAST of Carg23622 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FXJ1	6.2e-213	99.46	B3 domain-containing transcription factor VRN1-like isoform X2 OS=Cucurbita mosc...	[more]
A0A6J1FUG6	6.2e-213	99.46	B3 domain-containing transcription factor VRN1-like isoform X1 OS=Cucurbita mosc...	[more]
A0A6J1JGU7	2.0e-211	98.91	B3 domain-containing transcription factor VRN1-like isoform X2 OS=Cucurbita maxi...	[more]
A0A6J1J7V4	2.0e-211	98.91	B3 domain-containing transcription factor VRN1-like isoform X1 OS=Cucurbita maxi...	[more]
A0A6J1D3D4	2.5e-201	93.48	B3 domain-containing transcription factor VRN1-like isoform X2 OS=Momordica char...	[more]

BLAST of Carg23622 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18990.1	1.2e-96	58.04	AP2/B3-like transcriptional factor family protein	[more]
AT1G49480.1	7.1e-60	67.25	related to vernalization1 1	[more]
AT4G01580.1	1.6e-11	41.67	AP2/B3-like transcriptional factor family protein	[more]
AT3G18960.1	1.4e-10	40.28	AP2/B3-like transcriptional factor family protein	[more]
AT1G49475.1	6.8e-10	38.89	AP2/B3-like transcriptional factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003340	B3 DNA binding domain	SMART	SM01019	B3_2	coord: 242..337 e-value: 6.4E-20 score: 82.2 coord: 2..70 e-value: 0.52 score: 3.9
IPR003340	B3 DNA binding domain	PFAM	PF02362	B3	coord: 8..67 e-value: 7.5E-8 score: 32.2 coord: 245..335 e-value: 4.8E-18 score: 64.9
IPR003340	B3 DNA binding domain	PROSITE	PS50863	B3	coord: 1..70 score: 11.984104
IPR003340	B3 DNA binding domain	PROSITE	PS50863	B3	coord: 242..337 score: 13.972416
IPR003340	B3 DNA binding domain	CDD	cd10017	B3_DNA	coord: 5..68 e-value: 4.25492E-13 score: 62.7305
IPR003340	B3 DNA binding domain	CDD	cd10017	B3_DNA	coord: 240..335 e-value: 1.12845E-23 score: 92.0056
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	2.40.330.10		coord: 1..71 e-value: 6.4E-15 score: 56.9
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	2.40.330.10		coord: 219..339 e-value: 1.2E-37 score: 130.4
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 5..70
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 237..337
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..199
None	No IPR available	PANTHER	PTHR31920	B3 DOMAIN-CONTAINING	coord: 184..352 coord: 4..124
None	No IPR available	PANTHER	PTHR31920:SF46	B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN	coord: 184..352 coord: 4..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23622-RA	Carg23622-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding