Carg23607 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg23607
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr20: 4602557 .. 4606749 (+)
RNA-Seq ExpressionCarg23607
SyntenyCarg23607
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCGGAAGTGGGGGAAGTTCCTCATGCCAACAACCATAAACGTGAGCCACTTGGACGAATCATCCACAAGTTGAGGAACATTGTAAGAAGAGGGAAGGGGCTGAAGTGATGTTAATAGTTAATGCGATCCAATAGATGGTTATTACGTAGTGATCGCTAGACACTTTGAAATTCTGTAACCAAGCTTAATCATACTTGTGACAATACGTAGTGGTGGTGATGGAAATCACCACATGATTGGCTTGCATTGGTTTTGAGTTCTAGGATAACACTGAATTTGATGGAATGATGGATATTATGTCACCTGAATGTTCATGTCTGGTGTGAAATTAACTTTTATTTAGTCAAAAGTCAAAAGTTGTTTGAAAAATCCATCAAACTAATTGTAGTTGAAATAACTCGATGATTCTGTTTGATAACCCATTAAACTAAGAAGCACTTGGACAAATGTGATTAGATCTGGCTCAAGTTTTGGAAAGTTGTCTCAATGCCCTTTCATTTGGGTTCTTGTTTGTCTGTCTGTCTGGCTTGATTAAAATTAAGAACGTATCAATTTTATGATCCATTCCAGTTTGTAAAGGGGTTAAGCCAGGTCAATTGATTGTTGCTCATGACAGGGCAAGGAAATTCCTACTTTGCCCGCACTTTGTTCTCGGACTATTCTCGGTAGAATAAAGTCTCTGTAGTGTAGAATAAAGTCTCTGTAGTCCCGAGTACGTGGATACTCATTCTAAATCACATGGGAGTCTGTAGCTAGGTTACCGGCCATCTCACTTTTGCCCCCACTCTAATTTTCCCGTTTCTACCGGAAACTGTGCAAGGGAAGTGTTTGAGTTCCCTTGACGAGACAGACGAAGTGTGGGGCTGTGCATCCAATGCTCCGGTTTAACTTGCTAGCCTAACCACGTCTTTAGTCTCGGAAAAAAAAAATGATTAAAGATGTGGGTACATTAGAGATTGAAAGGCCCCCCGAAAAAAATATTTGATGTAGTAGTGGACTGGAGTGGTGTGGGATGCGTCCACAAGTGACACTTCTGTCCTAGTTTGTCTTTTACTCCTCGTCTCTTCTTTCTCTTCTGGGTTGGCAGATCGTGCAAGTTCGAAATCATATTTATGCATGTATTTTCAATTTAAACATACTTCAGCTGATTAAATCGTATGTTTTGGTCTAGAGATTTAAATCTCGCAGCTACATATGTTGTTGAAGTCAAAATACTTGGGCACATATATATTCTCTGGAATATATATTAGAAAAAAAAAACTGCATTGATATTGATAAGGAATTACACTGTAACAAGCGTTGAATGAATGATCTTCTTTTTTCCTATTGAATCTGCTCTCTTGATTTGGCAGTCTGATATTTTCAGTTAATTGATTCAAGGTACTATGAATTGGGACCCAACGACCCGCCTTATGCAGCCAAATTCTACGACTGCTGTGGGGCTGAGGACGCCGAGGCGTCAGGCTGCACCACCAGCTTCCATGTTTCTTATGATGAATGATCATAACAACAATATCTGAAGCTCTTTTTCACTCAGGTCTTGTGCTTTGCACATTCTGTAGATATAATCTCACCACATCATCTGCCAAACAAGGTTCATCTCATCCCTTTTATGATTAAAGCTTCTGAATCACTTTGAGTTCTGTGTTGTGTTTGTAGAGAAGACTAAATGAAACATAACATATTTAGTTTCTGAAGAATGAGTTCAGACAAAGTTACTGTAGTTTCTCATTAGAAAACTATTTCTTGTAAAAAGTTGTTTTTGGTTTCATTTATTTTGTCTTACAGTGGCTGTAAAGTGTGTTCTGATTCTGGGACAGATAAGATTATGTCCGTTTCTCTTGGGACCTTAGGGGGAGATTAGAGAGAGAGAGAGTAAAAAACAAATGGGTGGTGAGGGATTCACGTGTAGGGTTGAACATTATGGTAATGAACTGCAGAAAGATATGGTGGTTGCAGACTACAGAGTCTTCAAATATTGTCTCTATAGCCTTTCCCTTTCGAGTTTTCTCCCATGGTTTTAAAATGTGTCTACTATATAGAGGTTTCCACACTCTTATAAAAAATGTTTCGTTTTCCTCTCCAACCGATGTGAGATCTCACAATTCACCCCCTTTGGGAACCCAGAAAAAATGTTGCCTGGTGTCTAGCTCTGATACCATTTATAACAGCGCGTTAACCAACTACTAGTAGATATTGTCCTCTTTGAATTTTCCCTTCAAAGGCTTTCCCTCAAGGTTTTAAAACACCTCTAAAACCGTGACACTGATAGTAATATTTGTTAGCAGTTAGTTTGGGTTGTTACAATGACATTGCAAGTTACAATGCAACGAGTTGTTCTTTATGCAGACTTTCCTATCCATGTTTCTAAAAGCAAACTTGTAGTTTATCATTAAGCTCAAAGATTTCTGTATTGAAATTTGATAGGTAGTTTATCGTCCTCGCTGGCACACAACCAGTGTGTGGCTCTGATACCATTTGTAATGGCCCAAGCCCACCATTAGCAGAATTTGTCCTCTTTGGATTTTCTCTTTCGGACTTCTTTTCAAGATTTTAAACGTCTATTAGGGAGAAATTTCAATACTCTTATAAGAAATGTTTCGTTAATCTCTCTAAGGAGGTTGGATATGACCAATTTGTATTTGTTTTTTTGGTTTATTTCTTCAAACTTTGGTGGAAAGAGAGGGAAAAAGTTGTTAAAGTAGGGTGTGTTTGGCTGACACAAGAATATGAACAACAAACAGTGAACAAAAAAAGTAAGAGGAAGAAACACATGTTCCCATGCCCATTGGGTATCTGAATAAATGCTCTGTCTCTTTGCTCCTTTCCAAACATTTGTCTTCCTTTTTTAAATGACTTGGCTTTTTTGACCTCTTCAAAACTCAAATCATCGTTCTTATCCATCTCTTCTCTCACTCGGTCGTTCTCTGTTAGGAATTAGAACCCTTCACAATGGTATGATATTATCCACTTTGAACATAAGCTCTCGTGACTTTGTTTTGAGTTTCCCCATAAGGTTTTATACCAATGGAAATGTATTCTTTACTTATAAACTCATGATCATTCCCTAAATTAGCCAATGTGGGACTCCCTCCCAACAATCCTCAACACTCTCAAGTTTGAAATTTAAATCATTTCGAGTTTTAAGCACACTAAAAGTTAAGATCTTTTGATGCGAGCTCAAAGTTATGGCTTCTCAAAGTTTAAATTTAAAGCATTCGGTTGAAGAAGTGTCTGAAGGAAATTTTGTTCAATTGTTGTCGGGCTAGTGGAGACAGAGTAATCGATTCGTAGAGTCAAACTAGGTGAAGAACTATCATGACATCATTTCAAAACTCGTCGAAGTTAAGATACGATTTTCTTTAAGGTTTTAAATGGCTTAATGTTTAGAATTATTAACGAGTTATGTCTTAGTCTCGTCGAGATCCCAAAATATTCTTATAAGAATTTTCTTTTCAAAAAATTGTAATTATAAGTCGATAGTTGAGAGACAATTATATTTATCCGATGAGAAAGTGATGAAGAACTTAATCATCAACCTAATTCATGTGCTTTGATTCTGAATAAAGTTGTAAAAGATTGTTCTTAATTGGCAATTAATATAGTGGATTAATGAAAAAAAATCATTGTTGGTATGATATAGTGGGATGACACAAGTCGTTGTCATTACAATATATAATGGAATCACAAAAAGCATTGTCATTATCAAGATAATATATGTACAACTCCATTTCATTTGTCCTATTAATCAATGTATTATTGCATCATTCAATTCGATCTTTCTATTTTTTTTTTTTAGTATGACGGTCGAGAATTTGAGCTTCTAATAAAAGAAAGGCATTCTCGTGTTTTAGACTCATTAGACTAGTTGTGAGACACTATATATTGAAAGTTTCTACGATGAGCAAGTGAATGGGGTTGGTGCTTTGTGTCATGATTATACTATGAAGAGAGTAGGTTGTGACTTCTACATCGCTAAGCAAGTGAATGGGGTTGGTGCTTTGTGTCATTATAACGATACTATGAAGAGAGTAGGGTGTGACTTCCACGTCGAGATGAGCAAAGCGGCGACCCTCAAGTGGAGTTCATTTGGCCAATCGAGGGCCAAGACATACGAGTGTTATGATGCGACTGAGGAGGATGGTGCATCATCCAATATAACGAGTAGACAAGAGTGTCAAAGATAG

mRNA sequence

ATGGCTCCGGAAGTGGGGGAAGTTCCTCATGCCAACAACCATAAACGTGAGCCACTTGGACGAATCATCCACAAGTTGAGGAACATTTTAATTGATTCAAGGTACTATGAATTGGGACCCAACGACCCGCCTTATGCAGCCAAATTCTACGACTGCTGTGGGGCTGAGGACGCCGAGGCGTCAGGCTGCACCACCAGCTTCCATACTAGTTGTGAGACACTATATATTGAAAGTTTCTACGATGAGCAAGTGAATGGGGTTGGTGCTTTGTGTCATGATTATACTATGAAGAGAGTAGGTTGTGACTTCTACATCGCTAAGCAAGTGAATGGGGTTGGTGCTTTGTGTCATTATAACGATACTATGAAGAGAGTAGGGTGTGACTTCCACGTCGAGATGAGCAAAGCGGCGACCCTCAAGTGGAGTTCATTTGGCCAATCGAGGGCCAAGACATACGAGTGTTATGATGCGACTGAGGAGGATGGTGCATCATCCAATATAACGAGTAGACAAGAGTGTCAAAGATAG

Coding sequence (CDS)

ATGGCTCCGGAAGTGGGGGAAGTTCCTCATGCCAACAACCATAAACGTGAGCCACTTGGACGAATCATCCACAAGTTGAGGAACATTTTAATTGATTCAAGGTACTATGAATTGGGACCCAACGACCCGCCTTATGCAGCCAAATTCTACGACTGCTGTGGGGCTGAGGACGCCGAGGCGTCAGGCTGCACCACCAGCTTCCATACTAGTTGTGAGACACTATATATTGAAAGTTTCTACGATGAGCAAGTGAATGGGGTTGGTGCTTTGTGTCATGATTATACTATGAAGAGAGTAGGTTGTGACTTCTACATCGCTAAGCAAGTGAATGGGGTTGGTGCTTTGTGTCATTATAACGATACTATGAAGAGAGTAGGGTGTGACTTCCACGTCGAGATGAGCAAAGCGGCGACCCTCAAGTGGAGTTCATTTGGCCAATCGAGGGCCAAGACATACGAGTGTTATGATGCGACTGAGGAGGATGGTGCATCATCCAATATAACGAGTAGACAAGAGTGTCAAAGATAG

Protein sequence

MAPEVGEVPHANNHKREPLGRIIHKLRNILIDSRYYELGPNDPPYAAKFYDCCGAEDAEASGCTTSFHTSCETLYIESFYDEQVNGVGALCHDYTMKRVGCDFYIAKQVNGVGALCHYNDTMKRVGCDFHVEMSKAATLKWSSFGQSRAKTYECYDATEEDGASSNITSRQECQR
Homology
[Close]
BLAST of Carg23607 vs. NCBI nr
Match: KAG7010973.1 (hypothetical protein SDJN02_27771, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 376.3 bits (965), Expect = 1.4e-100
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0 

Query: 1   MAPEVGEVPHANNHKREPLGRIIHKLRNILIDSRYYELGPNDPPYAAKFYDCCGAEDAEA 60
           MAPEVGEVPHANNHKREPLGRIIHKLRNILIDSRYYELGPNDPPYAAKFYDCCGAEDAEA
Sbjct: 1   MAPEVGEVPHANNHKREPLGRIIHKLRNILIDSRYYELGPNDPPYAAKFYDCCGAEDAEA 60

Query: 61  SGCTTSFHTSCETLYIESFYDEQVNGVGALCHDYTMKRVGCDFYIAKQVNGVGALCHYND 120
           SGCTTSFHTSCETLYIESFYDEQVNGVGALCHDYTMKRVGCDFYIAKQVNGVGALCHYND
Sbjct: 61  SGCTTSFHTSCETLYIESFYDEQVNGVGALCHDYTMKRVGCDFYIAKQVNGVGALCHYND 120

Query: 121 TMKRVGCDFHVEMSKAATLKWSSFGQSRAKTYECYDATEEDGASSNITSRQECQR 176
           TMKRVGCDFHVEMSKAATLKWSSFGQSRAKTYECYDATEEDGASSNITSRQECQR
Sbjct: 121 TMKRVGCDFHVEMSKAATLKWSSFGQSRAKTYECYDATEEDGASSNITSRQECQR 175

[Close]
BLAST of Carg23607 vs. NCBI nr
Match: KAA0032099.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 6.5e-13
Identity = 36/39 (92.31%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 32  DSRYYELGPNDPPYAAKFYDCCGAEDAEASGCTTSFHTS 71
           D RYYELGPNDPPYAAKFYDCCGAED EASGCTTSFH S
Sbjct: 623 DIRYYELGPNDPPYAAKFYDCCGAEDVEASGCTTSFHVS 661

[Close]
BLAST of Carg23607 vs. NCBI nr
Match: XP_023513270.1 (uncharacterized protein LOC111777786 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 84.7 bits (208), Expect = 8.5e-13
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 34 RYYELGPNDPPYAAKFYDCCGAEDAEASGCTTSFHTS 71
          RYYELGPNDPPYAAKFYDCCGAEDAEASGCTTSFH S
Sbjct: 51 RYYELGPNDPPYAAKFYDCCGAEDAEASGCTTSFHVS 87

[Close]
BLAST of Carg23607 vs. NCBI nr
Match: XP_022986649.1 (uncharacterized protein LOC111484326 [Cucurbita maxima])

HSP 1 Score: 84.7 bits (208), Expect = 8.5e-13
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 34 RYYELGPNDPPYAAKFYDCCGAEDAEASGCTTSFHTS 71
          RYYELGPNDPPYAAKFYDCCGAEDAEASGCTTSFH S
Sbjct: 51 RYYELGPNDPPYAAKFYDCCGAEDAEASGCTTSFHVS 87

[Close]
BLAST of Carg23607 vs. NCBI nr
Match: XP_022944668.1 (uncharacterized protein LOC111449057 [Cucurbita moschata])

HSP 1 Score: 84.7 bits (208), Expect = 8.5e-13
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 34 RYYELGPNDPPYAAKFYDCCGAEDAEASGCTTSFHTS 71
          RYYELGPNDPPYAAKFYDCCGAEDAEASGCTTSFH S
Sbjct: 51 RYYELGPNDPPYAAKFYDCCGAEDAEASGCTTSFHVS 87

[Close]
BLAST of Carg23607 vs. ExPASy TrEMBL
Match: A0A5A7SSA1 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold223G00790 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.1e-13
Identity = 36/39 (92.31%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 32  DSRYYELGPNDPPYAAKFYDCCGAEDAEASGCTTSFHTS 71
           D RYYELGPNDPPYAAKFYDCCGAED EASGCTTSFH S
Sbjct: 623 DIRYYELGPNDPPYAAKFYDCCGAEDVEASGCTTSFHVS 661

[Close]
BLAST of Carg23607 vs. ExPASy TrEMBL
Match: A0A6J1JGM5 (uncharacterized protein LOC111484326 OS=Cucurbita maxima OX=3661 GN=LOC111484326 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.1e-13
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 34 RYYELGPNDPPYAAKFYDCCGAEDAEASGCTTSFHTS 71
          RYYELGPNDPPYAAKFYDCCGAEDAEASGCTTSFH S
Sbjct: 51 RYYELGPNDPPYAAKFYDCCGAEDAEASGCTTSFHVS 87

[Close]
BLAST of Carg23607 vs. ExPASy TrEMBL
Match: A0A6J1FYA3 (uncharacterized protein LOC111449057 OS=Cucurbita moschata OX=3662 GN=LOC111449057 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.1e-13
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 34 RYYELGPNDPPYAAKFYDCCGAEDAEASGCTTSFHTS 71
          RYYELGPNDPPYAAKFYDCCGAEDAEASGCTTSFH S
Sbjct: 51 RYYELGPNDPPYAAKFYDCCGAEDAEASGCTTSFHVS 87

[Close]
BLAST of Carg23607 vs. ExPASy TrEMBL
Match: A0A1S3C917 (uncharacterized protein LOC103498365 OS=Cucumis melo OX=3656 GN=LOC103498365 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-12
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 34 RYYELGPNDPPYAAKFYDCCGAEDAEASGCTTSFHTS 71
          RYYELGPNDPPYAAKFYDCCGAED EASGCTTSFH S
Sbjct: 61 RYYELGPNDPPYAAKFYDCCGAEDVEASGCTTSFHVS 97

[Close]
BLAST of Carg23607 vs. ExPASy TrEMBL
Match: A0A5D3DCD4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1293G00130 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-12
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 34 RYYELGPNDPPYAAKFYDCCGAEDAEASGCTTSFHTS 71
          RYYELGPNDPPYAAKFYDCCGAED EASGCTTSFH S
Sbjct: 61 RYYELGPNDPPYAAKFYDCCGAEDVEASGCTTSFHVS 97

[Close]
BLAST of Carg23607 vs. TAIR 10
Match: AT1G65000.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38060.1); Has 49 Blast hits to 49 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-11
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 34 RYYELGPNDPPYAAKFYDCCGAEDAEASGCTTSFHTS 71
          RYYEL P+DPPYAAKFYDCCGAED  A GC T+ H S
Sbjct: 44 RYYELKPDDPPYAAKFYDCCGAEDPNAPGCVTNPHIS 80

The following BLAST results are available for this feature:
BLAST of Carg23607 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7010973.11.4e-100100.00hypothetical protein SDJN02_27771, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0032099.16.5e-1392.31putative mitochondrial protein [Cucumis melo var. makuwa][more]
XP_023513270.18.5e-1397.30uncharacterized protein LOC111777786 [Cucurbita pepo subsp. pepo][more]
XP_022986649.18.5e-1397.30uncharacterized protein LOC111484326 [Cucurbita maxima][more]
XP_022944668.18.5e-1397.30uncharacterized protein LOC111449057 [Cucurbita moschata][more]
BLAST of Carg23607 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg23607 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SSA13.1e-1392.31Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A6J1JGM54.1e-1397.30uncharacterized protein LOC111484326 OS=Cucurbita maxima OX=3661 GN=LOC111484326... [more]
A0A6J1FYA34.1e-1397.30uncharacterized protein LOC111449057 OS=Cucurbita moschata OX=3662 GN=LOC1114490... [more]
A0A1S3C9171.2e-1294.59uncharacterized protein LOC103498365 OS=Cucumis melo OX=3656 GN=LOC103498365 PE=... [more]
A0A5D3DCD41.2e-1294.59Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Carg23607 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G65000.12.2e-1175.68unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35106:SF1BNAA07G25190D PROTEINcoord: 33..70
NoneNo IPR availablePANTHERPTHR35106BNAA07G25190D PROTEINcoord: 33..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg23607-RACarg23607-RAmRNA