Carg23574 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg23574
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein LOW PSII ACCUMULATION 3, chloroplastic
Location	Carg_Chr16: 9700462 .. 9704837 (+)
RNA-Seq Expression	Carg23574
Synteny	Carg23574

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTTGATGAGGCTACAGCTGGTGGAGCGAGAGAATCAATGAAGATTGAAAGAGGAGTTTCGATACGTTCAGTGACAATGGCGGCCCGTAGGTATGGATCTTAGCATCTTTCTATGCTTTCTCTCGTTTCTTCTTGTTTTGTTCTTTTGTTTTTTTAAAAAATGGTAAAAATATCCTTTGTTCTTCAAAAAGTTTTGAATTATTTTATTTCTCCATATGTTTTTAATTGCTTTCTATTTAATAAATTTTTAAATTAATCTTTTAGTTTAATTAGTCCCTTAATTTTTTATAAATTCTATTTTTGTCCCTAACTTTATCTTTTATTGTCTAATTAATGTTTTTTTCTCTGAGATTCTGCCTTGATAGGAATATTGTATATTTTATTTATTATTTAATAATAGTATTATTGTATAGATAATTAATTTTCTTGTTTATTGATTTTTCTTTTTCTGTTTTTCTCCCATTTATTTAAAAAAGAAAAAAGAAAAAGAAGAAGAAGAAGAAGAGCGTGTTTAATATTTATTTATTTATATTTTTTAATGTAAACAAAATAAAATAGGTTTCGTAGTTATTGTTTAAATTAAGATGATTAATTATTTTGTTTTATGTAAAATGATTTTTTTTTAAAATAAAACATTTGAATTTATTTTTTTTATGTTTTTAAAATATTCATTTTATATGAAAAACATGATAGATAATGATTTGGTCATGCTTTTAAAAAAATTGAAATAAATAAATAAGTGAAATGGAAGATTTGTTTGATTCCATTCGGTCCTCTCGTTTGGAGGAAAGAACATCAATCATCAATATTCTCTCTCTCTTGTTTTTCTTTTTCACTACGAAGTGTGCTTCATTCCTCAGGCAAGGCTTCCGATCGAGGAGAAATGTATTTCTCCAACGCGAATTTTGTCTCTAGCTCTACCATTCCGGCTGCCGTTCTTCCACTTCCTTCTCGAAATGTAATTTCTCGTGAAGTTTCTTTCTCGTTTTCTTTGGCGTTCTGCTCTATTTTACTTCGAAATTCTTTTTCCTCAAGTATTTTTTCTCTGTTTCTATCGGTAGTATGCGTGTTTCAGGATGTCTCACCGGAAAATTCATCGGAGTTTGCTTTCTAGTTCAGTGTTGGAGTTTATGGCGGGAAGAAATCTCAGAGTTCTGTCGAATTCGAGTAATCGCGAGAGTAGCGATACTTCGACTGATTTTGACGTTCCGTTTCCACGAGATTATTTTGATCTTCTTGATCAGGTTTGGATTCAATCACTTTAGAAATCTCGTTTGTTTGTTTGTTTTTACTTCTTGGAGCCATTTTTTCTACGATCACTTCAATGCTGTGTGCGTTTTTTAGTGTCATTTTGGTAGTTAGCTACTTCAATTAACTTCCACTTAGCTTTTCATTTCATGTTATTTTTCAAATTACGTTTAACTTTGAGATGTAACTGTCATTTTCGGATCTCGTCTATAAAAAACTGCAGGCGAAAAAAGCAACTGAAGCGGCTTTAAGAGACAACAAACAGTTGATGGTTAGTTTGAGCACATTTTGATTTCTGTGGAATGGAAAGAAGCATTTATAGATTCATAAAATAGTCTGAATTTTCTGATCAAATCTATTGTACTTCAGGAGATTGAATTTCCAACTGCTGGACTCGAATCAGTTCCAGGTTCTTCCTGTTCTCGATTTATTGCATTTTAATTGTGTTACCATCTCAAGTCGTTCCCAGGCCTCTCTAGTAACTTTCTTTGCCTGTTACAGACCATATAACCTTATGTATCAGGTGATGGCGAAGGAGGAATCGAAATGACTGAGAGTATGCAATTGATTCGCCAATTTTGTGACTGCTTCATAGATCCACTGAAAGCCACCAGGACCAGAGTAGTAATGTCCTACTGCATTATCCTTCTATTCTCTTATAAAATAAAATGTTTGCATTCACATATATATGCTACAGAATTTATCACTGGAAGGAACTAAGAAGCAATCGATCTTTTATGCGTTTCTCTCTAAAATTTCATCTGCATACAGATCAAAACTATGAAGATTTTTCCCTTTTTCTCGAGAAACTACTCAGTGAGGCCACCACAATGTGGCTAACACATTTTCATCATCAGATGTATGAAGGAGAAGTTTTCAAATTCATATGTAGTGATTATTAGTAGGCATGCAGATTTTTAATCCACATCTATTACAGGGCAGCCATATGACTGTGGCCTCATTGAATAACTTATCAATCTTTTCCTTATGATATCAGTCCGTACTAAAAACCTCTCTGGTGCTATAGACTATAGGTTAGAAAAATCTTCTTGTTTTCTTCACGATTCATCAACTTTTTCCCTTTTATCTTTACGATTTATCAACTTTTGTCCTCCGAAATACATTCATATTATGAAATTTGAAGGAGGAAATGTAATGCAGCTGGCATCCTTTTTATAATCATGGTTTTGTTTGTAATATGCTTGCTGTCTGATGTTCTCTCACTTTTCTGACCATGAAAAAGCTCTTTCACATTCTAGACTGTTGGTTATAGTAAAGAGAAACATTTGTAGTTCTTTCCAGAGGCCAACGAAGTAAAATATGCAAGAAATACAGCATTTGAGGGAGCTTCGTTCAAGTTGGACTATCTCACGAAACCATCATTCTTTGAGGATTTTGGTTTTGTTGAGAAAGTGAAAATGGCAGACCGTGTGAAACCAGAAGATGAACTTTTTCTGGTTGCATATCCATATTTCAATGTCAATGGTTAGTGCAGCCTTCCTTTGTTTCTTTTCCTTCTTATTTTAAAGCAATTTGCCCTTTGTCGGTTAAATTACATCGTCTTCTTCCCCATTGCAGAAATGCTTGTGGTTGAAGAGCTTTACAAGGAAGCTGTCGCAAACACTGCACGAAAGCTCATAATCTTTAATGGAGAGCTCGACCGCATTAGATCCGGCTGTATCCTTTTATCATCTTTTCTATTATCGAACGAAGAGTGGGCTCGGGATCAACTTTTAAAACGGTAAAAATGACATTATGTGGTTTCTGAAATTTAATAACAATGTCAAAATCTTAATTTTTTTTTCATTTAATTGGTTCATGAACAGAACCCAAGGTATAAACGTTCAATTTTGTGTCTAATAAATCTCTAGTGCATAGTTTATTAATCTATTGAATTTAGTAGCTTATAATGATTTAGTCTCCTAACTGCAACAATTTATTACTGCATATTTTTATAATTTGTAACGATCCTAAATGGTTAATTGTTCATGTTACTGACCAAAGTTCAAAGACTTGTGATCCTTTTTAATCCTCTTTTACTTCATAAAATGAGATGAATTTTCCGATGACAGGTTGTTGGGTTGTAATTCCACAGTTCTCTTTCATTATTATTATTATTTTGTGTTTGTTATGTGACTGGACCTTAATAGAGTAAAGATTATCCGCCATTTTTCTACCCAAAGCTGGCGGCACTTACGAAGACTCTCTTCCCCAAGATGGAGACTGTATATTACATCCACAACTTCAAGGGACAGAAAGGAGGAGTTCTTTTCAGGTTTCACATGACACTTTCTTTTAAATCCTGCCATTCCGATGATGATTCTTCCATAACTATATTCAATTATTGTGTTTCCCGTTTGTTATGATGGTAATGAAGGTGCTACCCAGGTCCTTGGAAAGTCCTTAGAAAAGTGAGGAATAAATTCGTCTGTGTTCATCAGCAACAGGACATGCCCTCTCTCAAGGAAGTCGCTTTAAACATTCTTCCATCATCTTGAGGTTACGTAACTTCTCCACTAATGAACTCTTACTTCACAATCATCTCACCCACATTCCATAAACTTTTCTTTTTTTGTTCTATAGTTTTAGAAACCAAGCTTATAAAGATGGCCGGGAATGCTTAACTTATCAATTTATCCAGTAAACTACTGGGGGCTCATGTAGCCCGTTAAGATCAATTGCAAAAACAAAAATAATCTTTTCTATATTGAATGAGGATTATTTGGTTTAACTGCATATGTATTGAGCGAACTACATTTATTTTTTTTTTGGCAGGTCTTATTAGTCGATATTACCCTTCATTTTCATGCAAAGAGGATCATTTGTTTGCTAGCATCGAAGTCTTTTCTGGTAAATGCTACATCATCATAATCTGTATATTCCTATTCAATATTTGACGTCCATGAAATTTACGGAATGGCCAATAATACACATAATTTAAAAAAAAAAATTTCTTCACTGAATCAAAACTTAAAAATCTCAATAAAATTCTAAAATTTAGTTTTATGTTTAATACATTCCTAACCTATTCCAATAATAATAATAACAGATTTATTAGTCTTTAAATCCACAAACTATAAATTTTGTATATAAAATTAGAATATACATAAAAAGTCCATGATT

mRNA sequence

ATGGAGGTTGATGAGGCTACAGCTGGTGGAGCGAGAGAATCAATGAAGATTGAAAGAGGAGTTTCGATACGTTCAGTGACAATGGCGGCCCGCAAGGCTTCCGATCGAGGAGAAATGTATTTCTCCAACGCGAATTTTGTCTCTAGCTCTACCATTCCGGCTGCCGTTCTTCCACTTCCTTCTCGAAATTATGCGTGTTTCAGGATGTCTCACCGGAAAATTCATCGGAGTTTGCTTTCTAGTTCAGTGTTGGAGTTTATGGCGGGAAGAAATCTCAGAGTTCTGTCGAATTCGAGTAATCGCGAGAGTAGCGATACTTCGACTGATTTTGACGTTCCGTTTCCACGAGATTATTTTGATCTTCTTGATCAGGCGAAAAAAGCAACTGAAGCGGCTTTAAGAGACAACAAACAGTTGATGGAGATTGAATTTCCAACTGCTGGACTCGAATCAGTTCCAGAGGCCAACGAAGTAAAATATGCAAGAAATACAGCATTTGAGGGAGCTTCGTTCAAGTTGGACTATCTCACGAAACCATCATTCTTTGAGGATTTTGGTTTTGTTGAGAAAGTGAAAATGGCAGACCGTGTGAAACCAGAAGATGAACTTTTTCTGGTTGCATATCCATATTTCAATGTCAATGAAATGCTTGTGGTTGAAGAGCTTTACAAGGAAGCTGTCGCAAACACTGCACGAAAGCTCATAATCTTTAATGGAGAGCTCGACCGCATTAGATCCGGCTGTATCCTTTTATCATCTTTTCTATTATCGAACGAAGAGTGGGCTCGGGATCAACTTTTAAAACGGTAAAAATGACATTATGTGGTTTCTGAAATTTAATAACAATGTCAAAATCTTAATTTTTTTTTCATTTAATTGGTTCATGAACAGAACCCAAGGTATAAACGTTCAATTTTGTGTCTAATAAATCTCTAGTGCATAGTTTATTAATCTATTGAATTTAGTAGCTTATAATGATTTAGTCTCCTAACTGCAACAATTTATTACTGCATATTTTTATAATTTGTAACGATCCTAAATGGTTAATTGTTCATGTTACTGACCAAAGTTCAAAGACTTGTGATCCTTTTTAATCCTCTTTTACTTCATAAAATGAGATGAATTTTCCGATGACAGGTTGTTGGGTTGTAATTCCACAGTTCTCTTTCATTATTATTATTATTTTGTGTTTGTTATGTGACTGGACCTTAATAGAGTAAAGATTATCCGCCATTTTTCTACCCAAAGCTGGCGGCACTTACGAAGACTCTCTTCCCCAAGATGGAGACTGTATATTACATCCACAACTTCAAGGGACAGAAAGGAGGAGTTCTTTTCAGGTTTCACATGACACTTTCTTTTAAATCCTGCCATTCCGATGATGATTCTTCCATAACTATATTCAATTATTGTGTTTCCCGTTTGTTATGATGGTAATGAAGGTGCTACCCAGGTCCTTGGAAAGTCCTTAGAAAAGTGAGGAATAAATTCGTCTGTGTTCATCAGCAACAGGACATGCCCTCTCTCAAGGAAGTCGCTTTAAACATTCTTCCATCATCTTGAGGTTACGTAACTTCTCCACTAATGAACTCTTACTTCACAATCATCTCACCCACATTCCATAAACTTTTCTTTTTTTGTTCTATAGTTTTAGAAACCAAGCTTATAAAGATGGCCGGGAATGCTTAACTTATCAATTTATCCAGTAAACTACTGGGGGCTCATGTAGCCCGTTAAGATCAATTGCAAAAACAAAAATAATCTTTTCTATATTGAATGAGGATTATTTGGTTTAACTGCATATGTATTGAGCGAACTACATTTATTTTTTTTTTGGCAGGTCTTATTAGTCGATATTACCCTTCATTTTCATGCAAAGAGGATCATTTGTTTGCTAGCATCGAAGTCTTTTCTGGTAAATGCTACATCATCATAATCTGTATATTCCTATTCAATATTTGACGTCCATGAAATTTACGGAATGGCCAATAATACACATAATTTAAAAAAAAAAATTTCTTCACTGAATCAAAACTTAAAAATCTCAATAAAATTCTAAAATTTAGTTTTATGTTTAATACATTCCTAACCTATTCCAATAATAATAATAACAGATTTATTAGTCTTTAAATCCACAAACTATAAATTTTGTATATAAAATTAGAATATACATAAAAAGTCCATGATT

Coding sequence (CDS)

ATGGAGGTTGATGAGGCTACAGCTGGTGGAGCGAGAGAATCAATGAAGATTGAAAGAGGAGTTTCGATACGTTCAGTGACAATGGCGGCCCGCAAGGCTTCCGATCGAGGAGAAATGTATTTCTCCAACGCGAATTTTGTCTCTAGCTCTACCATTCCGGCTGCCGTTCTTCCACTTCCTTCTCGAAATTATGCGTGTTTCAGGATGTCTCACCGGAAAATTCATCGGAGTTTGCTTTCTAGTTCAGTGTTGGAGTTTATGGCGGGAAGAAATCTCAGAGTTCTGTCGAATTCGAGTAATCGCGAGAGTAGCGATACTTCGACTGATTTTGACGTTCCGTTTCCACGAGATTATTTTGATCTTCTTGATCAGGCGAAAAAAGCAACTGAAGCGGCTTTAAGAGACAACAAACAGTTGATGGAGATTGAATTTCCAACTGCTGGACTCGAATCAGTTCCAGAGGCCAACGAAGTAAAATATGCAAGAAATACAGCATTTGAGGGAGCTTCGTTCAAGTTGGACTATCTCACGAAACCATCATTCTTTGAGGATTTTGGTTTTGTTGAGAAAGTGAAAATGGCAGACCGTGTGAAACCAGAAGATGAACTTTTTCTGGTTGCATATCCATATTTCAATGTCAATGAAATGCTTGTGGTTGAAGAGCTTTACAAGGAAGCTGTCGCAAACACTGCACGAAAGCTCATAATCTTTAATGGAGAGCTCGACCGCATTAGATCCGGCTGTATCCTTTTATCATCTTTTCTATTATCGAACGAAGAGTGGGCTCGGGATCAACTTTTAAAACGGTAA

Protein sequence

MEVDEATAGGARESMKIERGVSIRSVTMAARKASDRGEMYFSNANFVSSSTIPAAVLPLPSRNYACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNSSNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPEANEVKYARNTAFEGASFKLDYLTKPSFFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGCILLSSFLLSNEEWARDQLLKR

Homology

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BLAST of Carg23574 vs. NCBI nr
Match: KAG7015785.1 (hypothetical protein SDJN02_23423, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 518.8 bits (1335), Expect = 2.7e-143
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0


Query: 1   MEVDEATAGGARESMKIERGVSIRSVTMAARKASDRGEMYFSNANFVSSSTIPAAVLPLP 60
           MEVDEATAGGARESMKIERGVSIRSVTMAARKASDRGEMYFSNANFVSSSTIPAAVLPLP
Sbjct: 1   MEVDEATAGGARESMKIERGVSIRSVTMAARKASDRGEMYFSNANFVSSSTIPAAVLPLP 60

Query: 61  SRNYACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNSSNRESSDTSTDFDVPFPRDYFD 120
           SRNYACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNSSNRESSDTSTDFDVPFPRDYFD
Sbjct: 61  SRNYACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNSSNRESSDTSTDFDVPFPRDYFD 120

Query: 121 LLDQAKKATEAALRDNKQLMEIEFPTAGLESVPEANEVKYARNTAFEGASFKLDYLTKPS 180
           LLDQAKKATEAALRDNKQLMEIEFPTAGLESVPEANEVKYARNTAFEGASFKLDYLTKPS
Sbjct: 121 LLDQAKKATEAALRDNKQLMEIEFPTAGLESVPEANEVKYARNTAFEGASFKLDYLTKPS 180

Query: 181 FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGE 240
           FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGE
Sbjct: 181 FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGE 240

Query: 241 LDRIRSGCILLSSFLLSNEEWARDQLLKR 270
           LDRIRSGCILLSSFLLSNEEWARDQLLKR
Sbjct: 241 LDRIRSGCILLSSFLLSNEEWARDQLLKR 269

[Close]

BLAST of Carg23574 vs. NCBI nr
Match: XP_022923333.1 (protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita moschata])

HSP 1 Score: 388.7 bits (997), Expect = 4.2e-104
Identity = 208/246 (84.55%), Postives = 209/246 (84.96%), Query Frame = 0


Query: 39  MYFSNANFVSSSTIPAAVLPLPSRNYACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS 98
           MYFSNANFVSSSTIPAAVLPLPSRNYACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS
Sbjct: 1   MYFSNANFVSSSTIPAAVLPLPSRNYACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS 60

Query: 99  SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESV------ 158
           SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESV      
Sbjct: 61  SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEG 120

Query: 159 -------------------------------PEANEVKYARNTAFEGASFKLDYLTKPSF 218
                                          PEANEVK+ARNTAFEGASFKLDYLTKPSF
Sbjct: 121 GIEMTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPSF 180

Query: 219 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGEL 248
           FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGEL
Sbjct: 181 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGEL 240

[Close]

BLAST of Carg23574 vs. NCBI nr
Match: XP_023553103.1 (protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023553104.1 protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 385.6 bits (989), Expect = 3.6e-103
Identity = 206/246 (83.74%), Postives = 208/246 (84.55%), Query Frame = 0


Query: 39  MYFSNANFVSSSTIPAAVLPLPSRNYACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS 98
           MYFSNANFVSSSTIPAAVLPLPSRN+ACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS
Sbjct: 1   MYFSNANFVSSSTIPAAVLPLPSRNFACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS 60

Query: 99  SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESV------ 158
           SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESV      
Sbjct: 61  SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEG 120

Query: 159 -------------------------------PEANEVKYARNTAFEGASFKLDYLTKPSF 218
                                          PEANEVK+ARNTAFEGASFKLDYLTKPSF
Sbjct: 121 GIEMTGSMQLIRQFCDCFIEPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPSF 180

Query: 219 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGEL 248
           FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANT RKLIIFNGEL
Sbjct: 181 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTTRKLIIFNGEL 240

[Close]

BLAST of Carg23574 vs. NCBI nr
Match: KAG6577746.1 (hypothetical protein SDJN03_25320, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 384.0 bits (985), Expect = 1.0e-102
Identity = 206/246 (83.74%), Postives = 207/246 (84.15%), Query Frame = 0


Query: 39  MYFSNANFVSSSTIPAAVLPLPSRNYACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS 98
           MYFSNANFVSSSTIPAAVLPLPSRNYACF MSHRKIHRSLLSSSVLEFMAGRNLRVLSNS
Sbjct: 1   MYFSNANFVSSSTIPAAVLPLPSRNYACFWMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS 60

Query: 99  SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESV------ 158
           SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESV      
Sbjct: 61  SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEG 120

Query: 159 -------------------------------PEANEVKYARNTAFEGASFKLDYLTKPSF 218
                                          PEANEVK+ARNTAFEGASFKLDYLTKPSF
Sbjct: 121 GIEMTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPSF 180

Query: 219 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGEL 248
           FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANT RKLIIFNGEL
Sbjct: 181 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTTRKLIIFNGEL 240

[Close]

BLAST of Carg23574 vs. NCBI nr
Match: XP_022965338.1 (protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita maxima])

HSP 1 Score: 382.9 bits (982), Expect = 2.3e-102
Identity = 205/246 (83.33%), Postives = 206/246 (83.74%), Query Frame = 0


Query: 39  MYFSNANFVSSSTIPAAVLPLPSRNYACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS 98
           MYFSNA FVSSSTIPAAVLPLPSRNYACFRM HRKIHRSLLSSSVLEFMAGRNLRVLSNS
Sbjct: 1   MYFSNAKFVSSSTIPAAVLPLPSRNYACFRMCHRKIHRSLLSSSVLEFMAGRNLRVLSNS 60

Query: 99  SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESV------ 158
           SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESV      
Sbjct: 61  SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEG 120

Query: 159 -------------------------------PEANEVKYARNTAFEGASFKLDYLTKPSF 218
                                          PEANEVK+ARNTAFEGASFKLDYLTKPSF
Sbjct: 121 GIEMTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPSF 180

Query: 219 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGEL 248
           FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANT RKLIIFNGEL
Sbjct: 181 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTTRKLIIFNGEL 240

[Close]

BLAST of Carg23574 vs. ExPASy TrEMBL
Match: A0A6J1E988 (protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431057 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 2.0e-104
Identity = 208/246 (84.55%), Postives = 209/246 (84.96%), Query Frame = 0


Query: 39  MYFSNANFVSSSTIPAAVLPLPSRNYACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS 98
           MYFSNANFVSSSTIPAAVLPLPSRNYACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS
Sbjct: 1   MYFSNANFVSSSTIPAAVLPLPSRNYACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS 60

Query: 99  SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESV------ 158
           SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESV      
Sbjct: 61  SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEG 120

Query: 159 -------------------------------PEANEVKYARNTAFEGASFKLDYLTKPSF 218
                                          PEANEVK+ARNTAFEGASFKLDYLTKPSF
Sbjct: 121 GIEMTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPSF 180

Query: 219 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGEL 248
           FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGEL
Sbjct: 181 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGEL 240

[Close]

BLAST of Carg23574 vs. ExPASy TrEMBL
Match: A0A6J1HNL5 (protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111465233 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 1.1e-102
Identity = 205/246 (83.33%), Postives = 206/246 (83.74%), Query Frame = 0


Query: 39  MYFSNANFVSSSTIPAAVLPLPSRNYACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS 98
           MYFSNA FVSSSTIPAAVLPLPSRNYACFRM HRKIHRSLLSSSVLEFMAGRNLRVLSNS
Sbjct: 1   MYFSNAKFVSSSTIPAAVLPLPSRNYACFRMCHRKIHRSLLSSSVLEFMAGRNLRVLSNS 60

Query: 99  SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESV------ 158
           SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESV      
Sbjct: 61  SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEG 120

Query: 159 -------------------------------PEANEVKYARNTAFEGASFKLDYLTKPSF 218
                                          PEANEVK+ARNTAFEGASFKLDYLTKPSF
Sbjct: 121 GIEMTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPSF 180

Query: 219 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGEL 248
           FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANT RKLIIFNGEL
Sbjct: 181 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTTRKLIIFNGEL 240

[Close]

BLAST of Carg23574 vs. ExPASy TrEMBL
Match: A0A5D3CIQ2 (Protein LOW PSII ACCUMULATION 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001120 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 8.6e-95
Identity = 195/269 (72.49%), Postives = 205/269 (76.21%), Query Frame = 0


Query: 39  MYFSNANFVSSSTIPAAVLPLPSRNYACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS 98
           M+FSNANF SSSTI  AVLPL S   ACFR+SHRK HRS +SSS+ EFM  RNLRVL  S
Sbjct: 1   MHFSNANFASSSTISTAVLPLSSPELACFRISHRKTHRSFVSSSMFEFMPRRNLRVLPPS 60

Query: 99  -SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESV----- 158
            SNR++S+ STD DVPFPRDY DLL+QAKKATEAALRDNKQLMEIEFPTAGLESV     
Sbjct: 61  LSNRQNSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGE 120

Query: 159 --------------------------------PEANEVKYARNTAFEGASFKLDYLTKPS 218
                                           PEANEVK+ARNTAFEG SFKLDYLTKPS
Sbjct: 121 GGIEMTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTAFEGVSFKLDYLTKPS 180

Query: 219 FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGE 270
           FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAV NT RKLIIFNGE
Sbjct: 181 FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVQNTTRKLIIFNGE 240

[Close]

BLAST of Carg23574 vs. ExPASy TrEMBL
Match: A0A6J1CWN5 (uncharacterized protein LOC111014905 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111014905 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.9e-89
Identity = 185/252 (73.41%), Postives = 196/252 (77.78%), Query Frame = 0


Query: 39  MYFSNANFVSSSTIPAAVLPLPSRNYACFRMSHRKIHRSLLSSSVLEFMA-GRNLRVLSN 98
           M+FS ANF  +S+I AA+LPLPSRN ACFR+SHRK HRS +S S+LEFMA  RNLRV +N
Sbjct: 1   MHFSTANFAFTSSITAAILPLPSRNLACFRISHRKFHRSFVSGSMLEFMACRRNLRVSAN 60

Query: 99  SSNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESV----- 158
           S  RESS+ ST  DVPFPRDY DLLDQA+KATEAALRDNKQLMEIEFPTAGLESV     
Sbjct: 61  SGYRESSNASTASDVPFPRDYSDLLDQARKATEAALRDNKQLMEIEFPTAGLESVPGDSE 120

Query: 159 --------------------------------PEANEVKYARNTAFEGASFKLDYLTKPS 218
                                           PEANEVK+ARNTAFEGASFKLDYLTKPS
Sbjct: 121 GGIEMTESMQLIRQFCDCSIDPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPS 180

Query: 219 FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGE 253
           FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAV NT RKLIIFNGE
Sbjct: 181 FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVVNTTRKLIIFNGE 240

[Close]

BLAST of Carg23574 vs. ExPASy TrEMBL
Match: A0A6J1CWD3 (protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014905 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 1.1e-86
Identity = 180/247 (72.87%), Postives = 191/247 (77.33%), Query Frame = 0


Query: 39  MYFSNANFVSSSTIPAAVLPLPSRNYACFRMSHRKIHRSLLSSSVLEFMA-GRNLRVLSN 98
           M+FS ANF  +S+I AA+LPLPSRN ACFR+SHRK HRS +S S+LEFMA  RNLRV +N
Sbjct: 1   MHFSTANFAFTSSITAAILPLPSRNLACFRISHRKFHRSFVSGSMLEFMACRRNLRVSAN 60

Query: 99  SSNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESV----- 158
           S  RESS+ ST  DVPFPRDY DLLDQA+KATEAALRDNKQLMEIEFPTAGLESV     
Sbjct: 61  SGYRESSNASTASDVPFPRDYSDLLDQARKATEAALRDNKQLMEIEFPTAGLESVPGDSE 120

Query: 159 --------------------------------PEANEVKYARNTAFEGASFKLDYLTKPS 218
                                           PEANEVK+ARNTAFEGASFKLDYLTKPS
Sbjct: 121 GGIEMTESMQLIRQFCDCSIDPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPS 180

Query: 219 FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGE 248
           FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAV NT RKLIIFNGE
Sbjct: 181 FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVVNTTRKLIIFNGE 240

[Close]

BLAST of Carg23574 vs. TAIR 10
Match: AT5G48790.1 (Domain of unknown function (DUF1995) )

HSP 1 Score: 213.8 bits (543), Expect = 1.7e-55
Identity = 134/245 (54.69%), Postives = 154/245 (62.86%), Query Frame = 0


Query: 41  FSNANFVSSSTIPAAVLPLPSRNYACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS-S 100
           FS A  VS +++ A  L   S+N  C          SL S +       RNL+  + S S
Sbjct: 5   FSIATTVSPASL-AGTLASNSKNVLC----------SLHSKNNDITKTNRNLKFRACSVS 64

Query: 101 NRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESV------- 160
              +++TS D +VPFPRDY +L++QAK+A E AL+D KQLMEIEFPT+GL SV       
Sbjct: 65  GGYNNNTSVD-NVPFPRDYVELINQAKEAVEMALKDEKQLMEIEFPTSGLASVPGDGEGA 124

Query: 161 ------------------------------PEANEVKYARNTAFEGASFKLDYLTKPSFF 220
                                         PEANEVK+A+ T F G  FKLDYLTKPS F
Sbjct: 125 TEMTESINMIREFCDRLLAPEKARSTRIFFPEANEVKFAQKTVFGGTYFKLDYLTKPSLF 184

Query: 221 EDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELD 248
           EDFGF E+VKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAV NT RKLIIFNGELD
Sbjct: 185 EDFGFFERVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVVNTDRKLIIFNGELD 237

The following BLAST results are available for this feature:

BLAST of Carg23574 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015785.1	2.7e-143	100.00	hypothetical protein SDJN02_23423, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022923333.1	4.2e-104	84.55	protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita moschata]	[more]
XP_023553103.1	3.6e-103	83.74	protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita pepo subsp. pepo] >XP_...	[more]
KAG6577746.1	1.0e-102	83.74	hypothetical protein SDJN03_25320, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022965338.1	2.3e-102	83.33	protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita maxima]	[more]

BLAST of Carg23574 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg23574 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E988	2.0e-104	84.55	protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1HNL5	1.1e-102	83.33	protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A5D3CIQ2	8.6e-95	72.49	Protein LOW PSII ACCUMULATION 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A6J1CWN5	1.9e-89	73.41	uncharacterized protein LOC111014905 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CWD3	1.1e-86	72.87	protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 OS=Momordica charantia...	[more]

BLAST of Carg23574 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48790.1	1.7e-55	54.69	Domain of unknown function (DUF1995)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018962	Domain of unknown function DUF1995	PFAM	PF09353	DUF1995	coord: 115..248 e-value: 7.3E-18 score: 65.3
None	No IPR available	PANTHER	PTHR34051:SF1	PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC ISOFORM X1	coord: 153..247 coord: 80..153
IPR044687	Protein LOW PSII ACCUMULATION 3	PANTHER	PTHR34051	PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC	coord: 80..153 coord: 153..247

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23574-RA	Carg23574-RA	mRNA