Carg23531 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg23531
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr06: 3598662 .. 3601329 (+)
RNA-Seq ExpressionCarg23531
SyntenyCarg23531
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCATCCTTCATAATGAAGAGGCTTACAATGAAGGGTTTGTGGAAGAGATTGAATCTCTTCATCTAGAACAATTGTTATTTAACTTGAAAAGGAAAATAACAATTAAATAACAAACAGCAAATGAGAAGTCCACATGAACATTTGACAAATAATTATTGGACACAAATAATTATTGGACACAAGAACTAATCGTGGTTGCAAAGATGCTTGTGGTTTTGTAGAATATCGTTAATTGGCAGTAAAAGAGCTTTAGGCATAAGAGTATTAGCTGAATTAACTTACAAAAGAGTATTAGCTGAATTAACTTACAAACTTTTGTCTCAAGATACTCTAATGCTTGTTCTTGTGTATATGCTTTTTCCTTCGCACATTCCTACAATAATAGTGCAGTTGTCAAAGAGAAAAAGAAAACTATAAAACTGACAAAGGACTAAACCAAGAATAAACGGATTCAGAACTATACAGCCTATAGAACAGGTGCAATATCCATATACTCAAAAGCTACAGCATAACAGTCTCAAAACAAGTTTGAATGCATATGCATTTCAGCATGACAGATGCTATTGCGAAGTTTGTCATAGTTTAGGCTGTTCCCTGACTACAGAGGAGTACTTTCATAATATATTCTTTTTTTTTCTGGCAAAGGATTGAACACCTGTTTGCTCTTCCAAAGTGAGGTTTGGCATCTCACAGTAACTCTAAAAAAACAGACAACACTTTGATAGAAGAACCTTAGTCTGGCACTCCCACGATCACGTAATATACACTTTGCAACACTCATATGCCATTTTTGTTAGAAACCACGACCCTCCACAATATTACGATATTGTCCACTTTGAGCATAAACTCTCATGACTTTGCTTTTGATTTCTCAAAAGGCCTCGTATCAATGGAGATAGTATTCCTTACTATGATCTTCTCCTTAACTAGCCGATATGTGACTCCTCTCCCAACAATCCTCCCTTGAACAAAGTATACCATAGAGTCTCCCTGAGGCCTACAGAGCCCTCGAACAGCCTCCTCTTAATCGAGGCTCAACTCCTTCTCAGGAGCCCTCAAACAAAGTACACCCTTTGTTCGACACTAAGTCACCTTTGACTACACCTTCGAGGCTCACAACTTCTTTGTTTGACACTTGAGGATTCTATTGACATGGCTAAGTTAAAAGCATGACTCTAATACCATGTTAGGAATCACGGACCCTCCACAATAGTATGATATCGTCTACTTTGAGCATAAACTCTCATGTTTGATTATTTTTACTGCACCTTTCAGTGAAAGGGAATGAAGGAGAAGCAACGGTTTGGTTGTTTAGGCTTGAGTTTGTCAGAAGGATTGATCTCTGTCCAAGTTTCTTGAAATGTTTGGGGTATTCTTCTATACTTACTTATTCTACAGATACCAAAAGAATTTTCATTTCAATCTCTACTTCCATTGGTCGAATTGGTCGAATCATAGATATGGAACGCCAAAGAATAGTAAGATAATGAGCCCACAGAAGGTTCGGCTAAGATAGCTCAAACAAATAAGTCACATTGATAAGCCACAACGAAGTCAAAGGACAATTTGTGATATTTTCACACTAAACAAACCCAGCAACAAAGATCCTTTGCTGTGTTCTTGCAGCATACCAAGACATGTCGAGATTGGAAGTTTTAAAGAGGAATTGGTGCAGTAAATCTTACCATGTGCTTTAACTTCTGGTAGTAAATTGGTCCCATAAATATTGTAATGGGCAACCTGTGATACCTAGAGAATGAACCAACATATCAGCTTCTAACAGAGTCAGAACACAAAATGTTGGTGCCAAAGAATAAAGGTCTAGGAAATTTTTCTTTCCAAATTTCAATTATTTAGCATGCAGAGAGTGTATTGACAAGAAAAGGTATGTGCTACGCCTAAGGAAACTCATAGAAGCAAAACTGTGCAATTTCATTCCATCCTTAATGCGGGCTAAGACTCTAATAAAGTAAACCTAACAAAGCAATAAAATATTAGGTATTTTCATTTTTGGTTGAATATGCAAACTTTCTACTTCTTGTGCTGAAATATTATGAAACATTTTCATATACAAGCTCATTTCAAAGCAATAAAATGCTACTGGATCATAATATCCTTGCCCAGAGCTTTGGGCATCTGAAATGAAAAATGCTGCTTGAATTTCTTCTACAGAATGAGTTGAATTGAATGTAACAATATATGTCCAAATTAAAACTTCAAGTTCTAAATACTAAACTGAAGCATTATACCATAAGAATAAACCTAGAGTGGCTGGCACATTGTTATAGGAGAACAGGTGCAGAAAAGAGAATAACCTGCTTCTCATTCACAAACTCGCCAATTTTTCCAGCTCTCCTCAGCATTCTCATACCGTAGCAAAGTACTAAAGGAAGAAGCCGACAAGTGTGAAACAAGTAGGAAATGAACATGCTAGAGACATGAATGAAAAATGAGTGTAAAACAAGAAGCCGACAGCATCGATGCAGCAATGAACATGCTAGAGACATGAATGAAAAACGTGTACCCTAAGATAAGTACGATCATTGCTGGATTCAATTCGATCATTGGCCTTGACTATCTTTTTAATTTCTGTATTCACGAAGTAGTTAAGGAATCGCAAGCGTTGTCGAACCAGACCTCTTACTTGAAACCAGATGATTAA

mRNA sequence

ATGGCATCATCCTTCATAATGAAGAGGCTTACAATGAAGGATACCAAAAGAATTTTCATTTCAATCTCTACTTCCATTGGTCGAATTGGTCGAATCATAGATATGGAACGCCAAAGAATACATGCAGAGAGTGTATTGACAAGAAAAGTTAAGGAATCGCAAGCGTTGTCGAACCAGACCTCTTACTTGAAACCAGATGATTAA

Coding sequence (CDS)

ATGGCATCATCCTTCATAATGAAGAGGCTTACAATGAAGGATACCAAAAGAATTTTCATTTCAATCTCTACTTCCATTGGTCGAATTGGTCGAATCATAGATATGGAACGCCAAAGAATACATGCAGAGAGTGTATTGACAAGAAAAGTTAAGGAATCGCAAGCGTTGTCGAACCAGACCTCTTACTTGAAACCAGATGATTAA

Protein sequence

MASSFIMKRLTMKDTKRIFISISTSIGRIGRIIDMERQRIHAESVLTRKVKESQALSNQTSYLKPDD
Homology
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BLAST of Carg23531 vs. NCBI nr
Match: KAG7028308.1 (hypothetical protein SDJN02_09489, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125.9 bits (315), Expect = 1.3e-25
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MASSFIMKRLTMKDTKRIFISISTSIGRIGRIIDMERQRIHAESVLTRKVKESQALSNQT 60
          MASSFIMKRLTMKDTKRIFISISTSIGRIGRIIDMERQRIHAESVLTRKVKESQALSNQT
Sbjct: 1  MASSFIMKRLTMKDTKRIFISISTSIGRIGRIIDMERQRIHAESVLTRKVKESQALSNQT 60

Query: 61 SYLKPDD 68
          SYLKPDD
Sbjct: 61 SYLKPDD 67

The following BLAST results are available for this feature:
BLAST of Carg23531 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7028308.11.3e-25100.00hypothetical protein SDJN02_09489, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg23531 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg23531 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg23531 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg23531-RACarg23531-RAmRNA