Carg23487 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg23487
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionearly light-induced protein 1, chloroplastic-like
LocationCarg_Chr14: 12844174 .. 12845094 (-)
RNA-Seq ExpressionCarg23487
SyntenyCarg23487
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATCACTACCAGTTCACTGATCGACAAACAACAACTCTCCATAGCCAATTTCATCATACTCTGTTATCGTTCTATACCTCAGGACATAGCTTAATGGCTGCCTCAGCTGTAATGCAATCCATTCTGGCGAGTTCGGCTAGTCGAAATGCTTGTAGGACACCGGCGAATCGGCTTCTCCCGGCGGCGGTTCGGCCGTTCTCCCGGAGAGCGGCTAACTTCCGAGTGCGATGTACGGCGGAGGTACTCGCTTGGCTATTTCCGTTTTCTTGGTGATTAAATGTACTTCTATTCTGCTATTGAAGTTTCCAAGGCTACAATCGTGGAGTGATCTGTTGTATTGTTTTGATTTACAGGAGGATCAGAGAGAGCCAGCGACTCCTCCATCGGTTTCACTGCCGTCTCCACAACCAGGGCCATCTCCCACGCCATCGCCGAAGGTAATTAAACCTGCAACATCTACAAGCAGTTCTCGATTAAACGCCTGAAATGTAATAGATCGTAGGTGAATATTTATAGCCATTACATAGTTAATTTGAGATCTGGTAATCTCCGCAGATGAGTACGAAGTTAACAGACATTTTGGCGTTCAGCGGGCCAGCGCCGGAGAGGATCAACGGGCGGCTTGCGATGGTAGGGTTCGTAGCTGCTCTAGCGGTTGAAGCAGCGAAAGGACAGGACGTGTTGGAGCAGATAGGGAACGGGGGAATCCCGTGGTTTGTGGGAACAAGCGCGATTCTGACACTGGCGTCGCTGATTCCCTTTATTAGAGGAGTGAGTGTGGAGTCTAACTCGAAGGGGTTTATGACTTCCAAGGCGGAGCTGTGGAATGGGAGGTTTGCGATGTTGGGCCTTCTTGCTTTGGCCTTCACCGAGTATGTCACGGGTGGAAGCCTCGTGTAAGTTTTAGTTGGGAGCTTTTGG

mRNA sequence

CATCACTACCAGTTCACTGATCGACAAACAACAACTCTCCATAGCCAATTTCATCATACTCTGTTATCGTTCTATACCTCAGGACATAGCTTAATGGCTGCCTCAGCTGTAATGCAATCCATTCTGGCGAGTTCGGCTAGTCGAAATGCTTGTAGGACACCGGCGAATCGGCTTCTCCCGGCGGCGGTTCGGCCGTTCTCCCGGAGAGCGGCTAACTTCCGAGTGCGATGTACGGCGGAGGAGGATCAGAGAGAGCCAGCGACTCCTCCATCGGTTTCACTGCCGTCTCCACAACCAGGGCCATCTCCCACGCCATCGCCGAAGATGAGTACGAAGTTAACAGACATTTTGGCGTTCAGCGGGCCAGCGCCGGAGAGGATCAACGGGCGGCTTGCGATGGTAGGGTTCGTAGCTGCTCTAGCGGTTGAAGCAGCGAAAGGACAGGACGTGTTGGAGCAGATAGGGAACGGGGGAATCCCGTGGTTTGTGGGAACAAGCGCGATTCTGACACTGGCGTCGCTGATTCCCTTTATTAGAGGAGTGAGTGTGGAGTCTAACTCGAAGGGGTTTATGACTTCCAAGGCGGAGCTGTGGAATGGGAGGTTTGCGATGTTGGGCCTTCTTGCTTTGGCCTTCACCGAGTATGTCACGGGTGGAAGCCTCGTGTAAGTTTTAGTTGGGAGCTTTTGG

Coding sequence (CDS)

CATCACTACCAGTTCACTGATCGACAAACAACAACTCTCCATAGCCAATTTCATCATACTCTGTTATCGTTCTATACCTCAGGACATAGCTTAATGGCTGCCTCAGCTGTAATGCAATCCATTCTGGCGAGTTCGGCTAGTCGAAATGCTTGTAGGACACCGGCGAATCGGCTTCTCCCGGCGGCGGTTCGGCCGTTCTCCCGGAGAGCGGCTAACTTCCGAGTGCGATGTACGGCGGAGGAGGATCAGAGAGAGCCAGCGACTCCTCCATCGGTTTCACTGCCGTCTCCACAACCAGGGCCATCTCCCACGCCATCGCCGAAGATGAGTACGAAGTTAACAGACATTTTGGCGTTCAGCGGGCCAGCGCCGGAGAGGATCAACGGGCGGCTTGCGATGGTAGGGTTCGTAGCTGCTCTAGCGGTTGAAGCAGCGAAAGGACAGGACGTGTTGGAGCAGATAGGGAACGGGGGAATCCCGTGGTTTGTGGGAACAAGCGCGATTCTGACACTGGCGTCGCTGATTCCCTTTATTAGAGGAGTGAGTGTGGAGTCTAACTCGAAGGGGTTTATGACTTCCAAGGCGGAGCTGTGGAATGGGAGGTTTGCGATGTTGGGCCTTCTTGCTTTGGCCTTCACCGAGTATGTCACGGGTGGAAGCCTCGTGTAA

Protein sequence

HHYQFTDRQTTTLHSQFHHTLLSFYTSGHSLMAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPPSVSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLALAFTEYVTGGSLV
Homology
BLAST of Carg23487 vs. NCBI nr
Match: KAG6582332.1 (Early light-induced protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 421.8 bits (1083), Expect = 3.7e-114
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0

Query: 1   HHYQFTDRQTTTLHSQFHHTLLSFYTSGHSLMAASAVMQSILASSASRNACRTPANRLLP 60
           HHYQFTDRQTTTLHSQFHHTLLSFYTSGHSLMAASAVMQSILASSASRNACRTPANRLLP
Sbjct: 54  HHYQFTDRQTTTLHSQFHHTLLSFYTSGHSLMAASAVMQSILASSASRNACRTPANRLLP 113

Query: 61  AAVRPFSRRAANFRVRCTAEEDQREPATPPSVSLPSPQPGPSPTPSPKMSTKLTDILAFS 120
           AAVRPFSRRAANFRVRCTAEEDQREPATPPSVSLPSPQPGPSPTPSPKMSTKLTDILAFS
Sbjct: 114 AAVRPFSRRAANFRVRCTAEEDQREPATPPSVSLPSPQPGPSPTPSPKMSTKLTDILAFS 173

Query: 121 GPAPERINGRLAMVGFVAALAVEAAKGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRG 180
           GPAPERINGRLAMVGFVAALAVEAAKGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRG
Sbjct: 174 GPAPERINGRLAMVGFVAALAVEAAKGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRG 233

Query: 181 VSVESNSKGFMTSKAELWNGRFAMLGLLALAFTEYVTGGSLV 223
           VSVESNSKGFMTSKAELWNGRFAMLGLLALAFTEYVTGGSLV
Sbjct: 234 VSVESNSKGFMTSKAELWNGRFAMLGLLALAFTEYVTGGSLV 275

BLAST of Carg23487 vs. NCBI nr
Match: KAG7018741.1 (Early light-induced protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 421.8 bits (1083), Expect = 3.7e-114
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0

Query: 1   HHYQFTDRQTTTLHSQFHHTLLSFYTSGHSLMAASAVMQSILASSASRNACRTPANRLLP 60
           HHYQFTDRQTTTLHSQFHHTLLSFYTSGHSLMAASAVMQSILASSASRNACRTPANRLLP
Sbjct: 1   HHYQFTDRQTTTLHSQFHHTLLSFYTSGHSLMAASAVMQSILASSASRNACRTPANRLLP 60

Query: 61  AAVRPFSRRAANFRVRCTAEEDQREPATPPSVSLPSPQPGPSPTPSPKMSTKLTDILAFS 120
           AAVRPFSRRAANFRVRCTAEEDQREPATPPSVSLPSPQPGPSPTPSPKMSTKLTDILAFS
Sbjct: 61  AAVRPFSRRAANFRVRCTAEEDQREPATPPSVSLPSPQPGPSPTPSPKMSTKLTDILAFS 120

Query: 121 GPAPERINGRLAMVGFVAALAVEAAKGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRG 180
           GPAPERINGRLAMVGFVAALAVEAAKGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRG
Sbjct: 121 GPAPERINGRLAMVGFVAALAVEAAKGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRG 180

Query: 181 VSVESNSKGFMTSKAELWNGRFAMLGLLALAFTEYVTGGSLV 223
           VSVESNSKGFMTSKAELWNGRFAMLGLLALAFTEYVTGGSLV
Sbjct: 181 VSVESNSKGFMTSKAELWNGRFAMLGLLALAFTEYVTGGSLV 222

BLAST of Carg23487 vs. NCBI nr
Match: XP_022955473.1 (early light-induced protein 1, chloroplastic-like [Cucurbita moschata] >XP_022955474.1 early light-induced protein 1, chloroplastic-like [Cucurbita moschata] >XP_022955475.1 early light-induced protein 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 357.5 bits (916), Expect = 8.6e-95
Identity = 190/191 (99.48%), Postives = 190/191 (99.48%), Query Frame = 0

Query: 32  MAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPPS 91
           MAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATP S
Sbjct: 1   MAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPSS 60

Query: 92  VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL 151
           VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL
Sbjct: 61  VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL 120

Query: 152 EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLALA 211
           EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLALA
Sbjct: 121 EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLALA 180

Query: 212 FTEYVTGGSLV 223
           FTEYVTGGSLV
Sbjct: 181 FTEYVTGGSLV 191

BLAST of Carg23487 vs. NCBI nr
Match: XP_023527191.1 (early light-induced protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023527192.1 early light-induced protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 352.8 bits (904), Expect = 2.1e-93
Identity = 187/191 (97.91%), Postives = 189/191 (98.95%), Query Frame = 0

Query: 32  MAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPPS 91
           MAASAVMQSILASS SRNACRTPA+RLLPAAVRPFSRRAANFRVRCTAEEDQREPATP S
Sbjct: 1   MAASAVMQSILASSVSRNACRTPASRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPTS 60

Query: 92  VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL 151
           VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL
Sbjct: 61  VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL 120

Query: 152 EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLALA 211
           EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGL+ALA
Sbjct: 121 EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLVALA 180

Query: 212 FTEYVTGGSLV 223
           FTEYVTGGSLV
Sbjct: 181 FTEYVTGGSLV 191

BLAST of Carg23487 vs. NCBI nr
Match: XP_022980827.1 (early light-induced protein 1, chloroplastic-like [Cucurbita maxima] >XP_022980828.1 early light-induced protein 1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 349.7 bits (896), Expect = 1.8e-92
Identity = 185/191 (96.86%), Postives = 188/191 (98.43%), Query Frame = 0

Query: 32  MAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPPS 91
           MAASAVMQSIL SSA +NACRTPANRLLPAAV+PFSRRAANFRVRCTAEEDQREPATP S
Sbjct: 1   MAASAVMQSILVSSARQNACRTPANRLLPAAVQPFSRRAANFRVRCTAEEDQREPATPTS 60

Query: 92  VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL 151
           VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL
Sbjct: 61  VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL 120

Query: 152 EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLALA 211
           EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGL+ALA
Sbjct: 121 EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLVALA 180

Query: 212 FTEYVTGGSLV 223
           FTEYVTGGSLV
Sbjct: 181 FTEYVTGGSLV 191

BLAST of Carg23487 vs. ExPASy Swiss-Prot
Match: P93735 (Early light-induced protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELIP1 PE=1 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.3e-49
Identity = 114/197 (57.87%), Postives = 138/197 (70.05%), Query Frame = 0

Query: 31  LMAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAE----EDQREP 90
           +  AS  MQS+ A   +     T  N+L  A   P  +R     VRC AE     +   P
Sbjct: 1   MATASFNMQSVFAGGLTTRKINT--NKLFSAGSFPNLKRNYPVGVRCMAEGGPTNEDSSP 60

Query: 91  ATPPSVSLPSPQ-PGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAA 150
           A   S + P P+ P P P   PK+STK +D+LAFSGPAPERINGRLAMVGFVAALAVE +
Sbjct: 61  APSTSAAQPLPKSPSPPPPMKPKVSTKFSDLLAFSGPAPERINGRLAMVGFVAALAVELS 120

Query: 151 KGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAML 210
           KG++VL QI +GG+ WF+GT+AILTLASL+P  +G+SVES SKG MTS AELWNGRFAML
Sbjct: 121 KGENVLAQISDGGVSWFLGTTAILTLASLVPLFKGISVESKSKGIMTSDAELWNGRFAML 180

Query: 211 GLLALAFTEYVTGGSLV 223
           GL+ALAFTE+V GG+LV
Sbjct: 181 GLVALAFTEFVKGGTLV 195

BLAST of Carg23487 vs. ExPASy Swiss-Prot
Match: Q94K66 (Early light-induced protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELIP2 PE=1 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 9.1e-47
Identity = 109/198 (55.05%), Postives = 137/198 (69.19%), Query Frame = 0

Query: 31  LMAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAE-----EDQRE 90
           +  AS  MQS+ A+ +     R   N       + F +R A   VRC A+     ED   
Sbjct: 1   MATASFNMQSVFAAPSGVLTTRNIRN-----TNQLFFKRIAPVGVRCMAQGDPIKEDPSV 60

Query: 91  PATPPSVSLPS-PQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEA 150
           P+T  S + P  PQ  P P   PK+STK  D+LAFSGPAPERINGRLAMVGFVAA+A+E 
Sbjct: 61  PSTSTSATPPQMPQSPPPPVSKPKVSTKFGDLLAFSGPAPERINGRLAMVGFVAAIAMEL 120

Query: 151 AKGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAM 210
           +KG++V  QI +GG+ WF+GT+A+LTLAS++P  +G+  E+ SKGFMTS AELWNGRFAM
Sbjct: 121 SKGENVFAQISDGGVGWFLGTTALLTLASMVPLFKGIRAEAKSKGFMTSDAELWNGRFAM 180

Query: 211 LGLLALAFTEYVTGGSLV 223
           LGL+ALAFTEYVTGG+LV
Sbjct: 181 LGLVALAFTEYVTGGTLV 193

BLAST of Carg23487 vs. ExPASy Swiss-Prot
Match: P11432 (Early light-induced protein, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.6e-46
Identity = 109/199 (54.77%), Postives = 142/199 (71.36%), Query Frame = 0

Query: 32  MAASAVMQSILASSASRNACRTPANRL--LPAAVRPFSRRAANFRVRCTAEEDQREPA-- 91
           MA S+  QSI+++S +  + R+  N+   +P+   P  RR  + +VR  AE + +E +  
Sbjct: 1   MAVSS-CQSIMSNSMTNISSRSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKV 60

Query: 92  ----TPPSVSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVE 151
               T P+ S P+PQ  P+ T  PKMSTK +D++AFSGPAPERINGRLAM+GFVAA+ VE
Sbjct: 61  AVDPTTPTASTPTPQ--PAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVE 120

Query: 152 AAKGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFA 211
            AKGQ + EQ+  GG+ WF+GTS +L+LASLIPF +GVSVES SK  M+S AE WNGR A
Sbjct: 121 IAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIA 180

Query: 212 MLGLLALAFTEYVTGGSLV 223
           MLGL+ALAFTE+V G SLV
Sbjct: 181 MLGLVALAFTEFVKGTSLV 196

BLAST of Carg23487 vs. ExPASy Swiss-Prot
Match: Q01931 (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum OX=4153 GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 6.1e-35
Identity = 84/160 (52.50%), Postives = 110/160 (68.75%), Query Frame = 0

Query: 65  PFSRRAANFRVRCTAEEDQREPATPPSVSLPSPQPGPSPTPS-PKMSTKLT-DILAFSGP 124
           P  RR A F VR   E++++E          +   GP  TP+  +++TK T D+ +F G 
Sbjct: 39  PLMRRNAKFTVRSMREDNEKEEQQQQK-QQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGL 98

Query: 125 APERINGRLAMVGFVAALAVEAAKGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRGVS 184
           APERINGR AM+GFVAA+ VE A G+DV  Q+ NGG+ WF+ TSA+L LA+LIP  RG+S
Sbjct: 99  APERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLS 158

Query: 185 VESNSKGFMTSKAELWNGRFAMLGLLALAFTEYVTGGSLV 223
            E+ + GF  S AE+WNGRFAM+GL+ALAFTEYV GG L+
Sbjct: 159 PEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197

BLAST of Carg23487 vs. ExPASy Swiss-Prot
Match: P14895 (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.7e-33
Identity = 85/163 (52.15%), Postives = 110/163 (67.48%), Query Frame = 0

Query: 72  NFRVRCTAEEDQREPATPPSVSLPSPQPGPSPTP-----SPKMSTK-----LTDILAFSG 131
           N  V    + D  +  T  S S PSP    SP+P     +PK  TK     + D LAFSG
Sbjct: 68  NLFVYVQPDMDSAKETTSASTS-PSPSQYTSPSPTTIPAAPKPVTKKANPSVWDALAFSG 127

Query: 132 PAPERINGRLAMVGFVAALAVEAAKGQDVLEQIG--NGGIPWFVGTSAILTLASLIPFIR 191
           PAPERINGRLAMVGFVAAL+VEAA+G  +L+Q+G  + G+ WF+ T+ + ++ASL+P ++
Sbjct: 128 PAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQ 187

Query: 192 GVSVESNSKGFMTSKAELWNGRFAMLGLLALAFTEYVTGGSLV 223
           G SVES S G  ++ AELWNGRFAMLGL+ALA TE++TG   V
Sbjct: 188 GQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229

BLAST of Carg23487 vs. ExPASy TrEMBL
Match: A0A6J1GV79 (early light-induced protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111457488 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 4.2e-95
Identity = 190/191 (99.48%), Postives = 190/191 (99.48%), Query Frame = 0

Query: 32  MAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPPS 91
           MAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATP S
Sbjct: 1   MAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPSS 60

Query: 92  VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL 151
           VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL
Sbjct: 61  VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL 120

Query: 152 EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLALA 211
           EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLALA
Sbjct: 121 EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLALA 180

Query: 212 FTEYVTGGSLV 223
           FTEYVTGGSLV
Sbjct: 181 FTEYVTGGSLV 191

BLAST of Carg23487 vs. ExPASy TrEMBL
Match: A0A6J1ISC2 (early light-induced protein 1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480100 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 8.7e-93
Identity = 185/191 (96.86%), Postives = 188/191 (98.43%), Query Frame = 0

Query: 32  MAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPPS 91
           MAASAVMQSIL SSA +NACRTPANRLLPAAV+PFSRRAANFRVRCTAEEDQREPATP S
Sbjct: 1   MAASAVMQSILVSSARQNACRTPANRLLPAAVQPFSRRAANFRVRCTAEEDQREPATPTS 60

Query: 92  VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL 151
           VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL
Sbjct: 61  VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL 120

Query: 152 EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLALA 211
           EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGL+ALA
Sbjct: 121 EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLVALA 180

Query: 212 FTEYVTGGSLV 223
           FTEYVTGGSLV
Sbjct: 181 FTEYVTGGSLV 191

BLAST of Carg23487 vs. ExPASy TrEMBL
Match: A0A0A0LA49 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G145780 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 4.3e-68
Identity = 145/192 (75.52%), Postives = 160/192 (83.33%), Query Frame = 0

Query: 32  MAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPPS 91
           MAASAVMQSIL+++A+R   RT  NRLLPAA+RP SR  A FRVRC AEEDQRE A P S
Sbjct: 1   MAASAVMQSILSTTATRGVYRTTTNRLLPAALRPCSRSTAAFRVRCMAEEDQREQAIPSS 60

Query: 92  VSLPSPQPGPSPTPSPKM-STKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDV 151
           +    P+P PSP+P  K+ STKLTDILAFSGP PERINGRLAM+GFVAALAVE +KGQDV
Sbjct: 61  IPPSPPKPEPSPSPPSKVTSTKLTDILAFSGPGPERINGRLAMIGFVAALAVEVSKGQDV 120

Query: 152 LEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLAL 211
            EQI NGGIPWFVGTS +LTLASLIP  +GVS ESNSKG M+S AELWNGRFAMLGL+AL
Sbjct: 121 FEQIANGGIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSNAELWNGRFAMLGLVAL 180

Query: 212 AFTEYVTGGSLV 223
           AFTEYV GGSLV
Sbjct: 181 AFTEYVKGGSLV 192

BLAST of Carg23487 vs. ExPASy TrEMBL
Match: A0A5D3D3B2 (Early light-induced protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00800 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 7.7e-65
Identity = 142/192 (73.96%), Postives = 156/192 (81.25%), Query Frame = 0

Query: 32  MAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPPS 91
           MAASAVMQSI +S+ASR   RT  NRLLPAAVR  SR    FRVRCTAEEDQRE A P S
Sbjct: 1   MAASAVMQSIPSSTASRGVYRTTTNRLLPAAVRLCSRNTGAFRVRCTAEEDQREQAIPSS 60

Query: 92  VSLPSPQPGPSPTPSPKM-STKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDV 151
           +    P+  P+P+ + K+ STK TDILAFSGP PERINGRLAM+GFVAALAVE +KGQDV
Sbjct: 61  IPPSPPKLEPAPSSTSKVTSTKFTDILAFSGPGPERINGRLAMIGFVAALAVEVSKGQDV 120

Query: 152 LEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLAL 211
            EQI NGGIPWFVGTS +LTLASLIP  +GVS ESNSKG M+S AELWNGRFAMLGL+AL
Sbjct: 121 FEQIANGGIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSNAELWNGRFAMLGLVAL 180

Query: 212 AFTEYVTGGSLV 223
           AFTEYV GGSLV
Sbjct: 181 AFTEYVKGGSLV 192

BLAST of Carg23487 vs. ExPASy TrEMBL
Match: A0A1S3AXH6 (early light-induced protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483676 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 2.2e-64
Identity = 141/192 (73.44%), Postives = 155/192 (80.73%), Query Frame = 0

Query: 32  MAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPPS 91
           MAASAVMQSI +S+ASR   RT  NRLLPAAVR  SR    FRVRCT EEDQRE A P S
Sbjct: 1   MAASAVMQSIPSSTASRGVYRTTTNRLLPAAVRLCSRNTGAFRVRCTGEEDQREQAIPSS 60

Query: 92  VSLPSPQPGPSPTPSPKM-STKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDV 151
           +    P+  P+P+ + K+ STK TDILAFSGP PERINGRLAM+GFVAALAVE +KGQDV
Sbjct: 61  IPPSPPKLEPAPSSTSKVTSTKFTDILAFSGPGPERINGRLAMIGFVAALAVEVSKGQDV 120

Query: 152 LEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLAL 211
            EQI NGGIPWFVGTS +LTLASLIP  +GVS ESNSKG M+S AELWNGRFAMLGL+AL
Sbjct: 121 FEQIANGGIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSNAELWNGRFAMLGLVAL 180

Query: 212 AFTEYVTGGSLV 223
           AFTEYV GGSLV
Sbjct: 181 AFTEYVKGGSLV 192

BLAST of Carg23487 vs. TAIR 10
Match: AT3G22840.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 196.4 bits (498), Expect = 2.4e-50
Identity = 114/197 (57.87%), Postives = 138/197 (70.05%), Query Frame = 0

Query: 31  LMAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAE----EDQREP 90
           +  AS  MQS+ A   +     T  N+L  A   P  +R     VRC AE     +   P
Sbjct: 1   MATASFNMQSVFAGGLTTRKINT--NKLFSAGSFPNLKRNYPVGVRCMAEGGPTNEDSSP 60

Query: 91  ATPPSVSLPSPQ-PGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAA 150
           A   S + P P+ P P P   PK+STK +D+LAFSGPAPERINGRLAMVGFVAALAVE +
Sbjct: 61  APSTSAAQPLPKSPSPPPPMKPKVSTKFSDLLAFSGPAPERINGRLAMVGFVAALAVELS 120

Query: 151 KGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAML 210
           KG++VL QI +GG+ WF+GT+AILTLASL+P  +G+SVES SKG MTS AELWNGRFAML
Sbjct: 121 KGENVLAQISDGGVSWFLGTTAILTLASLVPLFKGISVESKSKGIMTSDAELWNGRFAML 180

Query: 211 GLLALAFTEYVTGGSLV 223
           GL+ALAFTE+V GG+LV
Sbjct: 181 GLVALAFTEFVKGGTLV 195

BLAST of Carg23487 vs. TAIR 10
Match: AT4G14690.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 188.3 bits (477), Expect = 6.4e-48
Identity = 109/198 (55.05%), Postives = 137/198 (69.19%), Query Frame = 0

Query: 31  LMAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAE-----EDQRE 90
           +  AS  MQS+ A+ +     R   N       + F +R A   VRC A+     ED   
Sbjct: 1   MATASFNMQSVFAAPSGVLTTRNIRN-----TNQLFFKRIAPVGVRCMAQGDPIKEDPSV 60

Query: 91  PATPPSVSLPS-PQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEA 150
           P+T  S + P  PQ  P P   PK+STK  D+LAFSGPAPERINGRLAMVGFVAA+A+E 
Sbjct: 61  PSTSTSATPPQMPQSPPPPVSKPKVSTKFGDLLAFSGPAPERINGRLAMVGFVAAIAMEL 120

Query: 151 AKGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAM 210
           +KG++V  QI +GG+ WF+GT+A+LTLAS++P  +G+  E+ SKGFMTS AELWNGRFAM
Sbjct: 121 SKGENVFAQISDGGVGWFLGTTALLTLASMVPLFKGIRAEAKSKGFMTSDAELWNGRFAM 180

Query: 211 LGLLALAFTEYVTGGSLV 223
           LGL+ALAFTEYVTGG+LV
Sbjct: 181 LGLVALAFTEYVTGGTLV 193

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6582332.13.7e-114100.00Early light-induced protein 1, chloroplastic, partial [Cucurbita argyrosperma su... [more]
KAG7018741.13.7e-114100.00Early light-induced protein 1, chloroplastic, partial [Cucurbita argyrosperma su... [more]
XP_022955473.18.6e-9599.48early light-induced protein 1, chloroplastic-like [Cucurbita moschata] >XP_02295... [more]
XP_023527191.12.1e-9397.91early light-induced protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo] >... [more]
XP_022980827.11.8e-9296.86early light-induced protein 1, chloroplastic-like [Cucurbita maxima] >XP_0229808... [more]
Match NameE-valueIdentityDescription
P937353.3e-4957.87Early light-induced protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=... [more]
Q94K669.1e-4755.05Early light-induced protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=... [more]
P114322.6e-4654.77Early light-induced protein, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1[more]
Q019316.1e-3552.50Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum O... [more]
P148955.7e-3352.15High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum... [more]
Match NameE-valueIdentityDescription
A0A6J1GV794.2e-9599.48early light-induced protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 ... [more]
A0A6J1ISC28.7e-9396.86early light-induced protein 1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN... [more]
A0A0A0LA494.3e-6875.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G145780 PE=4 SV=1[more]
A0A5D3D3B27.7e-6573.96Early light-induced protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A1S3AXH62.2e-6473.44early light-induced protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10348... [more]
Match NameE-valueIdentityDescription
AT3G22840.12.4e-5057.87Chlorophyll A-B binding family protein [more]
AT4G14690.16.4e-4855.05Chlorophyll A-B binding family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 122..167
e-value: 2.1E-5
score: 25.1
coord: 180..214
e-value: 1.4E-4
score: 22.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..106
NoneNo IPR availablePANTHERPTHR14154UPF0041 BRAIN PROTEIN 44-RELATEDcoord: 32..212
NoneNo IPR availablePANTHERPTHR14154:SF5EARLY LIGHT-INDUCED PROTEIN 1, CHLOROPLASTICcoord: 32..212
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 101..219

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg23487-RACarg23487-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009535 chloroplast thylakoid membrane