Carg23479 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg23479
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RING-H2 finger protein ATL13-like
Location	Carg_Chr12: 9688047 .. 9689231 (+)
RNA-Seq Expression	Carg23479
Synteny	Carg23479

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATTCTCTCAAACCCCATTTCTCCGCCGCCTCCACCGCCGCCGGATTTCAACTTTGACAACCAAGTAAGCCCCACAATTCTCATAGCCATAATCATCCTCTCCATTATCCTCTTCTTCTCCGCCCTCCTCCTCCTCCTTCTCCGATTCTTCCTCAAGCCCCAAATCAGAACAGATCCCGAAGATTCCGCCGGCGGCACGGCGGTTGACGGCGGCGCCTCTGCTTTCCAAGGCCAACTCCAGCAGCTCTTCCACCTCCACGACGCCGGCGTCGACCAATCCTTCATCGATACCCTCCCTGTTTTTCTCTACAAAGCCATAATCGGCCTGAAATTAGACCCTTTTGATTGCTCTGTTTGTCTCTGTGAATTTCAACCCAATGATAAACTCCGATTGTTGACCAAATGCAGCCATGCTTTTCATATGGAGTGTATCGACACGTGGCTTCTTTCCCACTCTACATGTCCCCTCTGCCGTGCCGGCTTGATTTCAGATGTCGGATTCCCCTCCAAAATTGTTGGAGTTCTTGACTCTGTAACTCATAGCTCCAGAGAAATTGGGGAAATTCAAACCGGTTCCTTTCTGGGTTTTCTTGGGGATGCGTTGGATTTTGCTGAAACGAAGCCAGATGAGCCGCCGCCGCCGCCGCCGCCGGCGGAGCAGACGGTGGTTCCTATAAAATTGGGGAAGTTTAAAAGCTTGGAGAGTAATGGAGAAGGGAGTAGCAATAATGGGAAAGTTGATTCGAGAAGGTGTTTTTCAATGGGGTCATTTGGGTATGTAATGGATGAGAATTCGTCTCTGCAAGTTCCGATCAGGACGCCGGCAGTGAGGAAACCGGCCAGGAAGAAGAGGAATCTGCCATTGATGCCGGGGAGTCTAGCGGCGATGTCGGAGTGCGACTGCGAATCAAGGCGAGAGTTTAATTTTACGGAATTGAATGAGAAAGTTGAGAGCTTTGTCGAAGAGAAGGTGGGCGGCGCGAACCAAGCCGGATCGGAAAATGGGATGGGAATGACGGAGGAAGAGAATGGAAGGAGAAATAGTTCGGAATTTGTTGAGAATCGGCGGTCGTTTGTGAGGAGGACGTTGCAGTGGGTGATGGGGAAGAACACGAAGAACAGTAGGATTGTTCATTCATCTTTTTCAACCAATGATGATCACTCTGATTGTTCTGTGTGA

mRNA sequence

ATGGCCATTCTCTCAAACCCCATTTCTCCGCCGCCTCCACCGCCGCCGGATTTCAACTTTGACAACCAAGTAAGCCCCACAATTCTCATAGCCATAATCATCCTCTCCATTATCCTCTTCTTCTCCGCCCTCCTCCTCCTCCTTCTCCGATTCTTCCTCAAGCCCCAAATCAGAACAGATCCCGAAGATTCCGCCGGCGGCACGGCGGTTGACGGCGGCGCCTCTGCTTTCCAAGGCCAACTCCAGCAGCTCTTCCACCTCCACGACGCCGGCGTCGACCAATCCTTCATCGATACCCTCCCTGTTTTTCTCTACAAAGCCATAATCGGCCTGAAATTAGACCCTTTTGATTGCTCTGTTTGTCTCTGTGAATTTCAACCCAATGATAAACTCCGATTGTTGACCAAATGCAGCCATGCTTTTCATATGGAGTGTATCGACACGTGGCTTCTTTCCCACTCTACATGTCCCCTCTGCCGTGCCGGCTTGATTTCAGATGTCGGATTCCCCTCCAAAATTGTTGGAGTTCTTGACTCTGTAACTCATAGCTCCAGAGAAATTGGGGAAATTCAAACCGGTTCCTTTCTGGGTTTTCTTGGGGATGCGTTGGATTTTGCTGAAACGAAGCCAGATGAGCCGCCGCCGCCGCCGCCGCCGGCGGAGCAGACGGTGGTTCCTATAAAATTGGGGAAGTTTAAAAGCTTGGAGAGTAATGGAGAAGGGAGTAGCAATAATGGGAAAGTTGATTCGAGAAGGTGTTTTTCAATGGGGTCATTTGGGTATGTAATGGATGAGAATTCGTCTCTGCAAGTTCCGATCAGGACGCCGGCAGTGAGGAAACCGGCCAGGAAGAAGAGGAATCTGCCATTGATGCCGGGGAGTCTAGCGGCGATGTCGGAGTGCGACTGCGAATCAAGGCGAGAGTTTAATTTTACGGAATTGAATGAGAAAGTTGAGAGCTTTGTCGAAGAGAAGGTGGGCGGCGCGAACCAAGCCGGATCGGAAAATGGGATGGGAATGACGGAGGAAGAGAATGGAAGGAGAAATAGTTCGGAATTTGTTGAGAATCGGCGGTCGTTTGTGAGGAGGACGTTGCAGTGGGTGATGGGGAAGAACACGAAGAACAGTAGGATTGTTCATTCATCTTTTTCAACCAATGATGATCACTCTGATTGTTCTGTGTGA

Coding sequence (CDS)

ATGGCCATTCTCTCAAACCCCATTTCTCCGCCGCCTCCACCGCCGCCGGATTTCAACTTTGACAACCAAGTAAGCCCCACAATTCTCATAGCCATAATCATCCTCTCCATTATCCTCTTCTTCTCCGCCCTCCTCCTCCTCCTTCTCCGATTCTTCCTCAAGCCCCAAATCAGAACAGATCCCGAAGATTCCGCCGGCGGCACGGCGGTTGACGGCGGCGCCTCTGCTTTCCAAGGCCAACTCCAGCAGCTCTTCCACCTCCACGACGCCGGCGTCGACCAATCCTTCATCGATACCCTCCCTGTTTTTCTCTACAAAGCCATAATCGGCCTGAAATTAGACCCTTTTGATTGCTCTGTTTGTCTCTGTGAATTTCAACCCAATGATAAACTCCGATTGTTGACCAAATGCAGCCATGCTTTTCATATGGAGTGTATCGACACGTGGCTTCTTTCCCACTCTACATGTCCCCTCTGCCGTGCCGGCTTGATTTCAGATGTCGGATTCCCCTCCAAAATTGTTGGAGTTCTTGACTCTGTAACTCATAGCTCCAGAGAAATTGGGGAAATTCAAACCGGTTCCTTTCTGGGTTTTCTTGGGGATGCGTTGGATTTTGCTGAAACGAAGCCAGATGAGCCGCCGCCGCCGCCGCCGCCGGCGGAGCAGACGGTGGTTCCTATAAAATTGGGGAAGTTTAAAAGCTTGGAGAGTAATGGAGAAGGGAGTAGCAATAATGGGAAAGTTGATTCGAGAAGGTGTTTTTCAATGGGGTCATTTGGGTATGTAATGGATGAGAATTCGTCTCTGCAAGTTCCGATCAGGACGCCGGCAGTGAGGAAACCGGCCAGGAAGAAGAGGAATCTGCCATTGATGCCGGGGAGTCTAGCGGCGATGTCGGAGTGCGACTGCGAATCAAGGCGAGAGTTTAATTTTACGGAATTGAATGAGAAAGTTGAGAGCTTTGTCGAAGAGAAGGTGGGCGGCGCGAACCAAGCCGGATCGGAAAATGGGATGGGAATGACGGAGGAAGAGAATGGAAGGAGAAATAGTTCGGAATTTGTTGAGAATCGGCGGTCGTTTGTGAGGAGGACGTTGCAGTGGGTGATGGGGAAGAACACGAAGAACAGTAGGATTGTTCATTCATCTTTTTCAACCAATGATGATCACTCTGATTGTTCTGTGTGA

Protein sequence

MAILSNPISPPPPPPPDFNFDNQVSPTILIAIIILSIILFFSALLLLLLRFFLKPQIRTDPEDSAGGTAVDGGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPFDCSVCLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDVGFPSKIVGVLDSVTHSSREIGEIQTGSFLGFLGDALDFAETKPDEPPPPPPPAEQTVVPIKLGKFKSLESNGEGSSNNGKVDSRRCFSMGSFGYVMDENSSLQVPIRTPAVRKPARKKRNLPLMPGSLAAMSECDCESRREFNFTELNEKVESFVEEKVGGANQAGSENGMGMTEEENGRRNSSEFVENRRSFVRRTLQWVMGKNTKNSRIVHSSFSTNDDHSDCSV

Homology

[Close]

BLAST of Carg23479 vs. NCBI nr
Match: KAG7021020.1 (putative RING-H2 finger protein ATL49, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 781.2 bits (2016), Expect = 4.3e-222
Identity = 394/394 (100.00%), Postives = 394/394 (100.00%), Query Frame = 0


Query: 1   MAILSNPISPPPPPPPDFNFDNQVSPTILIAIIILSIILFFSALLLLLLRFFLKPQIRTD 60
           MAILSNPISPPPPPPPDFNFDNQVSPTILIAIIILSIILFFSALLLLLLRFFLKPQIRTD
Sbjct: 1   MAILSNPISPPPPPPPDFNFDNQVSPTILIAIIILSIILFFSALLLLLLRFFLKPQIRTD 60

Query: 61  PEDSAGGTAVDGGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPFDCSV 120
           PEDSAGGTAVDGGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPFDCSV
Sbjct: 61  PEDSAGGTAVDGGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPFDCSV 120

Query: 121 CLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDVGFPSKIVGVLDSV 180
           CLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDVGFPSKIVGVLDSV
Sbjct: 121 CLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDVGFPSKIVGVLDSV 180

Query: 181 THSSREIGEIQTGSFLGFLGDALDFAETKPDEPPPPPPPAEQTVVPIKLGKFKSLESNGE 240
           THSSREIGEIQTGSFLGFLGDALDFAETKPDEPPPPPPPAEQTVVPIKLGKFKSLESNGE
Sbjct: 181 THSSREIGEIQTGSFLGFLGDALDFAETKPDEPPPPPPPAEQTVVPIKLGKFKSLESNGE 240

Query: 241 GSSNNGKVDSRRCFSMGSFGYVMDENSSLQVPIRTPAVRKPARKKRNLPLMPGSLAAMSE 300
           GSSNNGKVDSRRCFSMGSFGYVMDENSSLQVPIRTPAVRKPARKKRNLPLMPGSLAAMSE
Sbjct: 241 GSSNNGKVDSRRCFSMGSFGYVMDENSSLQVPIRTPAVRKPARKKRNLPLMPGSLAAMSE 300

Query: 301 CDCESRREFNFTELNEKVESFVEEKVGGANQAGSENGMGMTEEENGRRNSSEFVENRRSF 360
           CDCESRREFNFTELNEKVESFVEEKVGGANQAGSENGMGMTEEENGRRNSSEFVENRRSF
Sbjct: 301 CDCESRREFNFTELNEKVESFVEEKVGGANQAGSENGMGMTEEENGRRNSSEFVENRRSF 360

Query: 361 VRRTLQWVMGKNTKNSRIVHSSFSTNDDHSDCSV 395
           VRRTLQWVMGKNTKNSRIVHSSFSTNDDHSDCSV
Sbjct: 361 VRRTLQWVMGKNTKNSRIVHSSFSTNDDHSDCSV 394

[Close]

BLAST of Carg23479 vs. NCBI nr
Match: KAG6586189.1 (putative RING-H2 finger protein ATL49, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 778.5 bits (2009), Expect = 2.8e-221
Identity = 392/394 (99.49%), Postives = 393/394 (99.75%), Query Frame = 0


Query: 1   MAILSNPISPPPPPPPDFNFDNQVSPTILIAIIILSIILFFSALLLLLLRFFLKPQIRTD 60
           MAILSNPISPPPPPPPDFNFDNQVSPTILIAIIILSIILFFSALLLLLLRFFLKPQIRTD
Sbjct: 1   MAILSNPISPPPPPPPDFNFDNQVSPTILIAIIILSIILFFSALLLLLLRFFLKPQIRTD 60

Query: 61  PEDSAGGTAVDGGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPFDCSV 120
           PEDS GGTAVDGGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPFDCSV
Sbjct: 61  PEDSTGGTAVDGGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPFDCSV 120

Query: 121 CLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDVGFPSKIVGVLDSV 180
           CLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDVGFPSKIVGVLDSV
Sbjct: 121 CLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDVGFPSKIVGVLDSV 180

Query: 181 THSSREIGEIQTGSFLGFLGDALDFAETKPDEPPPPPPPAEQTVVPIKLGKFKSLESNGE 240
           THSSREIGEIQTGSFLGFLGDALDFAETKPDEPPPPPPPAEQTVVPIKLGKFKSLESNGE
Sbjct: 181 THSSREIGEIQTGSFLGFLGDALDFAETKPDEPPPPPPPAEQTVVPIKLGKFKSLESNGE 240

Query: 241 GSSNNGKVDSRRCFSMGSFGYVMDENSSLQVPIRTPAVRKPARKKRNLPLMPGSLAAMSE 300
           GSSNNGKVDSRRCFSMGSFGYVMDENSSLQVPIRTPAVRKPARKKRNLPL+PGSLAAMSE
Sbjct: 241 GSSNNGKVDSRRCFSMGSFGYVMDENSSLQVPIRTPAVRKPARKKRNLPLLPGSLAAMSE 300

Query: 301 CDCESRREFNFTELNEKVESFVEEKVGGANQAGSENGMGMTEEENGRRNSSEFVENRRSF 360
           CDCESRREFNFTELNEKVESFVEEKVGGANQAGSENGMGMTEEENGRRNSSEFVENRRSF
Sbjct: 301 CDCESRREFNFTELNEKVESFVEEKVGGANQAGSENGMGMTEEENGRRNSSEFVENRRSF 360

Query: 361 VRRTLQWVMGKNTKNSRIVHSSFSTNDDHSDCSV 395
           VRRTLQWVMGKNTKNSRIVHSSFSTNDDHSDCSV
Sbjct: 361 VRRTLQWVMGKNTKNSRIVHSSFSTNDDHSDCSV 394

[Close]

BLAST of Carg23479 vs. NCBI nr
Match: XP_022938053.1 (RING-H2 finger protein ATL13-like [Cucurbita moschata])

HSP 1 Score: 761.1 bits (1964), Expect = 4.6e-216
Identity = 386/394 (97.97%), Postives = 388/394 (98.48%), Query Frame = 0


Query: 1   MAILSNPISPPPPPPPDFNFDNQVSPTILIAIIILSIILFFSALLLLLLRFFLKPQIRTD 60
           MAILSNPISPPPPPPPDFNFDNQVSPTILIAIIILSIILFFSALLLLLLRFFLKPQIRTD
Sbjct: 1   MAILSNPISPPPPPPPDFNFDNQVSPTILIAIIILSIILFFSALLLLLLRFFLKPQIRTD 60

Query: 61  PEDSAGGTAVDGGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPFDCSV 120
           PEDSAGGTAVDGGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPFDCSV
Sbjct: 61  PEDSAGGTAVDGGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPFDCSV 120

Query: 121 CLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDVGFPSKIVGVLDSV 180
           CLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDVGFPSKIVGVLDSV
Sbjct: 121 CLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDVGFPSKIVGVLDSV 180

Query: 181 THSSREIGEIQTGSFLGFLGDALDFAETKPDEPPPPPPPAEQTVVPIKLGKFKSLESNGE 240
           +HSSREIGEIQTGSFLGFLGD LDFAE KPDEPPPPPP  EQTVVPIKLGKFKSLESNGE
Sbjct: 181 SHSSREIGEIQTGSFLGFLGDVLDFAEMKPDEPPPPPP--EQTVVPIKLGKFKSLESNGE 240

Query: 241 GSSNNGKVDSRRCFSMGSFGYVMDENSSLQVPIRTPAVRKPARKKRNLPLMPGSLAAMSE 300
           GSSNNGKVDSRRCFSMGSFGYVMDENSSLQVPIRTPAVRKPAR KRNLPLMPGSLAAMSE
Sbjct: 241 GSSNNGKVDSRRCFSMGSFGYVMDENSSLQVPIRTPAVRKPARNKRNLPLMPGSLAAMSE 300

Query: 301 CDCESRREFNFTELNEKVESFVEEKVGGANQAGSENGMGMTEEENGRRNSSEFVENRRSF 360
           CDCESRREFNF ELNEKVESFVEEKVGGAN+AGSENGMGMTEEENGRRNSSEFVENRRSF
Sbjct: 301 CDCESRREFNFMELNEKVESFVEEKVGGANRAGSENGMGMTEEENGRRNSSEFVENRRSF 360

Query: 361 VRRTLQWVMGKNTKNSRIVHSSFSTNDDHSDCSV 395
           VRRTLQWVMGKNTKNSRIVHSSFSTNDDHSDCSV
Sbjct: 361 VRRTLQWVMGKNTKNSRIVHSSFSTNDDHSDCSV 392

[Close]

BLAST of Carg23479 vs. NCBI nr
Match: XP_023538250.1 (RING-H2 finger protein ATL13-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 728.0 bits (1878), Expect = 4.3e-206
Identity = 378/409 (92.42%), Postives = 382/409 (93.40%), Query Frame = 0


Query: 1   MAILSNPIS---PPPPPPPDFNFDNQVSPTILIAIIILSIILFFSALLLLLLRFFLKPQI 60
           MAIL NPIS   PPPPPPPDFNFDNQVSPTILIAIIILSI+LFFSALLLLLLRFFLKPQI
Sbjct: 1   MAILPNPISPPPPPPPPPPDFNFDNQVSPTILIAIIILSILLFFSALLLLLLRFFLKPQI 60

Query: 61  RTDPEDSAGGTAVDGGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPFD 120
           RTDPEDSA G AVDG ASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPFD
Sbjct: 61  RTDPEDSAAGAAVDGAASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPFD 120

Query: 121 CSVCLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDVGFPSKIVGVL 180
           CSVCLCEFQP+DKLRLLTKCSHAFHM CIDTWLLSHSTCPLCRAGLISDVGFPSKIVGVL
Sbjct: 121 CSVCLCEFQPDDKLRLLTKCSHAFHMVCIDTWLLSHSTCPLCRAGLISDVGFPSKIVGVL 180

Query: 181 DSVTHSSREIGEIQTGSFLGFLGDALDFAETKPDEPPPPP---PPAEQTVVPIKLGKFKS 240
           DSVTHSSREIGEIQTGSFLGFLGD LDFAE KPDEPP PP     AEQTVVPIKLGKFKS
Sbjct: 181 DSVTHSSREIGEIQTGSFLGFLGDVLDFAEMKPDEPPTPPAAAAAAEQTVVPIKLGKFKS 240

Query: 241 LESNGEGSSNNGKVDSRRCFSMGSFGYVMDENSSLQVPIRTPAVRKPARKKRNLPLMPGS 300
           LESNGEGSSNNGKVDSRRCFSMGSFGYVMDENSSLQVPIRTPAVRKPARKKRNLPLMPGS
Sbjct: 241 LESNGEGSSNNGKVDSRRCFSMGSFGYVMDENSSLQVPIRTPAVRKPARKKRNLPLMPGS 300

Query: 301 LAAMSECDCESRREFNFTELNEKVE---------SFVEEKVGGANQAGSENGMGMTEEEN 360
           LAAMSECDCESRREFNFTELNEKVE         SFV+EKVGGAN+  SENGMGMTEEEN
Sbjct: 301 LAAMSECDCESRREFNFTELNEKVESFRRGSSKGSFVDEKVGGANRPRSENGMGMTEEEN 360

Query: 361 GRRNSSEFVENRRSFVRRTLQWVMGKNTKNSRIVHSSFSTNDDHSDCSV 395
           GRRNSSEFVENRRSFVRRTLQWVMGKNTKNSRIVHSSFSTNDDHSDCSV
Sbjct: 361 GRRNSSEFVENRRSFVRRTLQWVMGKNTKNSRIVHSSFSTNDDHSDCSV 409

[Close]

BLAST of Carg23479 vs. NCBI nr
Match: XP_022965405.1 (RING-H2 finger protein ATL13-like [Cucurbita maxima])

HSP 1 Score: 709.9 bits (1831), Expect = 1.2e-200
Identity = 371/407 (91.15%), Postives = 375/407 (92.14%), Query Frame = 0


Query: 1   MAILSNPIS----PPPPPPPDFNFDNQVSPTILIAIIILSIILFFSALLLLLLRFFLKPQ 60
           MAILSNPIS    PPPPPPPDFNFDNQVSPTILIAIIILSIILFFSALLLLLLRFFLK Q
Sbjct: 1   MAILSNPISLPPPPPPPPPPDFNFDNQVSPTILIAIIILSIILFFSALLLLLLRFFLKAQ 60

Query: 61  IRTDPEDSAGGTAVDGGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPF 120
           IRTDPED+AG     GGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPF
Sbjct: 61  IRTDPEDTAG-----GGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPF 120

Query: 121 DCSVCLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDVGFPSKIVGV 180
           DCSVCLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDVGFPSKIVGV
Sbjct: 121 DCSVCLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDVGFPSKIVGV 180

Query: 181 LDSVTHSSREIGEIQTGSFLGFLGDALDFAETKPDEPPPPPPPAEQTVVPIKLGKFKSLE 240
           LDSV+HSSREIGEIQTGSFLGFLGD LDFAE KPDEPPPPP  AEQTVVPIKLGKFKSLE
Sbjct: 181 LDSVSHSSREIGEIQTGSFLGFLGDVLDFAEMKPDEPPPPPAAAEQTVVPIKLGKFKSLE 240

Query: 241 SNGEGSSNNGKVDSRRCFSMGSFGYVMDENSSLQVPIRTPAVRKPARKKRNLPLMPGSLA 300
           SNGEGSSNNGKVDSRRCFSMGSFGYVMDENSSLQVPIRTPAVRK ARKKRNLPLMPGSLA
Sbjct: 241 SNGEGSSNNGKVDSRRCFSMGSFGYVMDENSSLQVPIRTPAVRKAARKKRNLPLMPGSLA 300

Query: 301 AMSECDCESRREFNFTELNEKV---------ESFVEEKVGGANQAGSENGMGMTEEENGR 360
           AMSECDCESRREFNFTELNEKV         ESFVEEKVGG NQ  SENGMGM EEE  R
Sbjct: 301 AMSECDCESRREFNFTELNEKVESFRHGSLKESFVEEKVGGTNQPRSENGMGMAEEEYRR 360

Query: 361 RNSSEFVENRRSFVRRTLQWVMGKNTKNSRIVHSSFSTNDDHSDCSV 395
           RNS E VENRRSFVRRTLQWV+GKNTKNSRIVHSSFSTNDDH+DCSV
Sbjct: 361 RNSLECVENRRSFVRRTLQWVIGKNTKNSRIVHSSFSTNDDHADCSV 402

[Close]

BLAST of Carg23479 vs. ExPASy Swiss-Prot
Match: Q940Q4 (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2)

HSP 1 Score: 258.5 bits (659), Expect = 1.3e-67
Identity = 198/467 (42.40%), Postives = 255/467 (54.60%), Query Frame = 0


Query: 6   NPISPPPPPP------PDFNFDNQVSPTILIAIIILSIILFFSALLLLLLRFFLKPQIRT 65
           +P S P  PP       +F+ ++++SP+IL+ IIILSII F S LL LL+RF L P  R 
Sbjct: 23  SPSSLPQEPPLSLRSSANFDLNSKISPSILLIIIILSIIFFISGLLHLLVRFLLTPSSR- 82

Query: 66  DPEDSAGGTAVDGGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPFDCS 125
           D ED           +A QGQLQQLFHLHD+GVDQSFIDTLPVF YK+IIGLK  PFDC+
Sbjct: 83  DRED------YFDNVTALQGQLQQLFHLHDSGVDQSFIDTLPVFHYKSIIGLKNYPFDCA 142

Query: 126 VCLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDVGF----PSKIVG 185
           VCLCEF+  DKLRLL KCSHAFHM+CIDTWLLSHSTCPLCR+ L+SD+       S  + 
Sbjct: 143 VCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRSSLLSDLSSHQDPRSSFLL 202

Query: 186 VLDSVT-HSSREIG-------------EIQTGS-FLGFLGDALDFAETKPDEPPPPP--- 245
           VL+S + HSSREIG             +I   S  LG +G+  D   T+ D         
Sbjct: 203 VLESASDHSSREIGGDRDSAACVAANDDIDVSSAHLGLVGNN-DLGSTRIDSGHGDQYLD 262

Query: 246 ---PPAEQTVVP--IKLGKFKSLESNGEGSSNNGKV------DSRRCFSMGSFGYVMDEN 305
                +   VVP  +KLGKF++++  GEG+S+N  +      D RRCFSMGS+ Y+MDE 
Sbjct: 263 GELGGSVGKVVPFSVKLGKFRNIDI-GEGTSSNNNIGNSSSLDERRCFSMGSYEYIMDEE 322

Query: 306 SSLQVPIRTPAVRKPARKKRNLPLMPGSLAAMSECDCESRREFNFT-------------- 365
           ++L+V + T   +K + K R L   PG   AMSEC  +      F+              
Sbjct: 323 TTLKVHVST---KKQSSKNRGL---PGHRTAMSECGFDPTGRLKFSGSGSMRIVEEAAEK 382

Query: 366 -------------------ELNEKVE-----SFVEEKVGGA------NQAGSENGM--GM 387
                              E + KV+     S V    G A      NQ    + M    
Sbjct: 383 NVVERESFSVSKIWLRGKKEKHSKVQGKEDSSLVSSSSGRAFSFRLSNQRNHPDAMIESG 442

[Close]

BLAST of Carg23479 vs. ExPASy Swiss-Prot
Match: Q9ZV53 (Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana OX=3702 GN=ATL49 PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.8e-61
Identity = 169/424 (39.86%), Postives = 233/424 (54.95%), Query Frame = 0


Query: 1   MAILSNPISPPPPPP--------PDFNFDNQVSPTILIAIIILSIILFFSALLLLLLRFF 60
           M    N IS  PPPP           N +++++P IL+ IIILSII F S LL +L++F 
Sbjct: 8   MKSTQNLISSSPPPPLIPLKSNTSLSNLNSKITPNILLIIIILSIIFFISGLLHILVKFL 67

Query: 61  LKPQIRTDPEDSAGGTAVDGGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLK 120
           L P  R   ED           +A QGQLQQLF+LHD+GVDQS IDTLPVF YK+I+GLK
Sbjct: 68  LTPS-RESRED------YFDNVTALQGQLQQLFNLHDSGVDQSLIDTLPVFHYKSIVGLK 127

Query: 121 LDPFDCSVCLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDV----G 180
           + PFDC VCLCEF+  DKLRLL KCSHAFH+ECIDTWLLSHSTCPLCR+ L+S       
Sbjct: 128 ISPFDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNLLSGFSSHHN 187

Query: 181 FPSKIVGVLDSVTHSSREIGEIQTGSFLGFLGDALDFAET-------KPDEPPPPPPPAE 240
             S  + VL+S   S   +  +++ S LG+  D  + +E+       K  +P       +
Sbjct: 188 LSSSYLLVLESEQSSRDMVPVLESNSQLGY--DVNNDSESTRIRSGRKSCDPDGDMDGLD 247

Query: 241 QTVVP--IKLGKFKSLESNGEG--------SSNNGKVDSRRCFSMGSFGYVMDENSSLQV 300
           + VVP  +KLGKF++++  GEG        S N+  VD RRC SMGS+ Y+MD+ ++L+V
Sbjct: 248 EKVVPLEVKLGKFRNIDHVGEGSDQKKNSISGNSKNVDGRRCLSMGSYEYIMDQEATLKV 307

Query: 301 PIRTPAVRKPARKKRNLPLMPGSLAAMSECDCESRREFNFTELNEKVESFVEEKVGGANQ 360
            + T   +K + K R    +P     MSEC  +   +     + E+ ESF   K+    +
Sbjct: 308 HVST---KKLSGKDR----VPSHRTVMSECGFDPTVKGIEKSVVER-ESFSLSKIWLRGK 367

Query: 361 AGSENGMGMTE--------------------EENGRRNSSEFVENRR-SFVRRTLQWVMG 375
              + G    +                    EE+ +  +SE +E +  SF RRT+ W+ G
Sbjct: 368 KEKQKGTSARDSDCSFVSSSSLRFPNHRIPPEESLKSENSESLETKTPSFARRTMHWLAG 414

[Close]

BLAST of Carg23479 vs. ExPASy Swiss-Prot
Match: Q9FL07 (RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.7e-49
Identity = 121/283 (42.76%), Postives = 166/283 (58.66%), Query Frame = 0


Query: 8   ISPPPPPPPDFNFDNQVSPTILIAIIILSIILFFSALLLLLLRFFLKPQIRTDPEDSAGG 67
           +SPP PPPP  +  N++SP +L  I+IL+++ F S LL LL+RF +K    T    S   
Sbjct: 27  LSPPSPPPP--SSGNRISPAVLFVIVILAVLFFISGLLHLLVRFLIKHPSATASSRSNRF 86

Query: 68  TAVDGGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAII---------GLKLDPFDC 127
             +   + A Q QLQQLFHL+D+G+DQ+FID LPVF YK I+         G   +PFDC
Sbjct: 87  PEI-STSDALQRQLQQLFHLNDSGLDQAFIDALPVFHYKEIVGSAGGGGGNGAAQEPFDC 146

Query: 128 SVCLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDVGFPSKIVGVLD 187
           +VCLCEF   DKLRLL  CSHAFH+ CIDTWL S+STCPLCR  L S  GF       ++
Sbjct: 147 AVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNSTCPLCRGTLFSP-GFS------ME 206

Query: 188 SVTHSSREIGEIQTGSFLGFLGDALDFAETKPDEPPPPPPPAEQTVVPIKLGKFKSLES- 247
           +      +I E + G         ++  E             E+ V+P++LGKFK L++ 
Sbjct: 207 NPMFDFDDIREDEEGVTENGSQKTMEIQEI----------VVEKGVLPVRLGKFKRLDNV 266

Query: 248 -NGE-------GSSNNGKVDSRRCFSMGSFGYVMDENSSLQVP 273
            NG+       G +++  +D+RRCFSMGS+ Y++  NS L+VP
Sbjct: 267 GNGQGQDVVAGGETSSSNLDARRCFSMGSYQYILG-NSELKVP 288

[Close]

BLAST of Carg23479 vs. ExPASy Swiss-Prot
Match: Q8GW38 (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 9.4e-47
Identity = 113/257 (43.97%), Postives = 158/257 (61.48%), Query Frame = 0


Query: 21  DNQVSPTILIAIIILSIILFFSALLLLLLRFFLKPQ---IRTDPEDSAGGTAVDGGASAF 80
           +N++SP IL  I++LS+I F  ++L LL+R++LK +   + + P +S         +  +
Sbjct: 46  NNRISPIILFIIVLLSVIFFICSILHLLVRYYLKKKRSNLSSSPNESNQNPEF-SDSDTY 105

Query: 81  QGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPFDCSVCLCEFQPNDKLRLLTKC 140
           Q QLQQLFHLHD+G+DQ+ ID LPVFLYK I G K +PFDC+VCLCEF  +DKLRLL  C
Sbjct: 106 QRQLQQLFHLHDSGLDQALIDALPVFLYKEIKGTK-EPFDCAVCLCEFSEDDKLRLLPNC 165

Query: 141 SHAFHMECIDTWLLSHSTCPLCRAGLISDVGFPSKIVGVLDSVTHSSREIGEIQTGSFLG 200
           SHAFH++CIDTWLLS+STCPLCR              G L S+ H   E  +   G F G
Sbjct: 166 SHAFHIDCIDTWLLSNSTCPLCR--------------GTLFSLGHQF-EYPDFNFGFFAG 225

Query: 201 FLGDALDFAETKPDEPPPPPPPAEQTVVPIKLGKFKS--LESNGE------GSSNNGKVD 260
              D        P + P      ++ V  ++LGKF+S  + +NGE      G +++  +D
Sbjct: 226 --DDGGGGVRVSPVQKPAENEIGKR-VFSVRLGKFRSSNIVNNGEVVVGGGGETSSSSLD 282

Query: 261 SRRCFSMGSFGYVMDEN 267
           +RRCFSMGS+ Y++ E+
Sbjct: 286 NRRCFSMGSYQYIVAES 282

[Close]

BLAST of Carg23479 vs. ExPASy Swiss-Prot
Match: Q9FHG8 (Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana OX=3702 GN=ATL50 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.6e-36
Identity = 80/148 (54.05%), Postives = 106/148 (71.62%), Query Frame = 0


Query: 17  DFNFDNQVSPTILIAIIILSIILFFSALLLLLLRFFLKPQIRTDPEDSAGGTAVDGGASA 76
           DF+    +SP +L+ I +LSII F +AL+ LL++F  +PQ R D  D+  G  +   ++A
Sbjct: 25  DFDLICMISPIVLLYITLLSIIFFVAALIHLLVKFLHRPQTRLD--DAYDG--ITESSTA 84

Query: 77  FQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPFDCSVCLCEFQPNDKLRLLTK 136
            QG+ Q  F+LHDA +DQSFID LP+  YK +IGL+ D  DC+VCL EF   D+LRLL K
Sbjct: 85  LQGRYQTRFNLHDAEIDQSFIDALPLLHYKTMIGLRHDLSDCAVCLREFTAEDELRLLPK 144

Query: 137 CSHAFHMECIDTWLLSHSTCPLCRAGLI 165
           CSHAFH+ECIDTWLL++STCPLCR  L+
Sbjct: 145 CSHAFHVECIDTWLLTNSTCPLCRDNLL 168

[Close]

BLAST of Carg23479 vs. ExPASy TrEMBL
Match: A0A6J1FHR6 (RING-H2 finger protein ATL13-like OS=Cucurbita moschata OX=3662 GN=LOC111444259 PE=4 SV=1)

HSP 1 Score: 761.1 bits (1964), Expect = 2.2e-216
Identity = 386/394 (97.97%), Postives = 388/394 (98.48%), Query Frame = 0


Query: 1   MAILSNPISPPPPPPPDFNFDNQVSPTILIAIIILSIILFFSALLLLLLRFFLKPQIRTD 60
           MAILSNPISPPPPPPPDFNFDNQVSPTILIAIIILSIILFFSALLLLLLRFFLKPQIRTD
Sbjct: 1   MAILSNPISPPPPPPPDFNFDNQVSPTILIAIIILSIILFFSALLLLLLRFFLKPQIRTD 60

Query: 61  PEDSAGGTAVDGGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPFDCSV 120
           PEDSAGGTAVDGGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPFDCSV
Sbjct: 61  PEDSAGGTAVDGGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPFDCSV 120

Query: 121 CLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDVGFPSKIVGVLDSV 180
           CLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDVGFPSKIVGVLDSV
Sbjct: 121 CLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDVGFPSKIVGVLDSV 180

Query: 181 THSSREIGEIQTGSFLGFLGDALDFAETKPDEPPPPPPPAEQTVVPIKLGKFKSLESNGE 240
           +HSSREIGEIQTGSFLGFLGD LDFAE KPDEPPPPPP  EQTVVPIKLGKFKSLESNGE
Sbjct: 181 SHSSREIGEIQTGSFLGFLGDVLDFAEMKPDEPPPPPP--EQTVVPIKLGKFKSLESNGE 240

Query: 241 GSSNNGKVDSRRCFSMGSFGYVMDENSSLQVPIRTPAVRKPARKKRNLPLMPGSLAAMSE 300
           GSSNNGKVDSRRCFSMGSFGYVMDENSSLQVPIRTPAVRKPAR KRNLPLMPGSLAAMSE
Sbjct: 241 GSSNNGKVDSRRCFSMGSFGYVMDENSSLQVPIRTPAVRKPARNKRNLPLMPGSLAAMSE 300

Query: 301 CDCESRREFNFTELNEKVESFVEEKVGGANQAGSENGMGMTEEENGRRNSSEFVENRRSF 360
           CDCESRREFNF ELNEKVESFVEEKVGGAN+AGSENGMGMTEEENGRRNSSEFVENRRSF
Sbjct: 301 CDCESRREFNFMELNEKVESFVEEKVGGANRAGSENGMGMTEEENGRRNSSEFVENRRSF 360

Query: 361 VRRTLQWVMGKNTKNSRIVHSSFSTNDDHSDCSV 395
           VRRTLQWVMGKNTKNSRIVHSSFSTNDDHSDCSV
Sbjct: 361 VRRTLQWVMGKNTKNSRIVHSSFSTNDDHSDCSV 392

[Close]

BLAST of Carg23479 vs. ExPASy TrEMBL
Match: A0A6J1HNL1 (RING-H2 finger protein ATL13-like OS=Cucurbita maxima OX=3661 GN=LOC111465320 PE=4 SV=1)

HSP 1 Score: 709.9 bits (1831), Expect = 5.9e-201
Identity = 371/407 (91.15%), Postives = 375/407 (92.14%), Query Frame = 0


Query: 1   MAILSNPIS----PPPPPPPDFNFDNQVSPTILIAIIILSIILFFSALLLLLLRFFLKPQ 60
           MAILSNPIS    PPPPPPPDFNFDNQVSPTILIAIIILSIILFFSALLLLLLRFFLK Q
Sbjct: 1   MAILSNPISLPPPPPPPPPPDFNFDNQVSPTILIAIIILSIILFFSALLLLLLRFFLKAQ 60

Query: 61  IRTDPEDSAGGTAVDGGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPF 120
           IRTDPED+AG     GGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPF
Sbjct: 61  IRTDPEDTAG-----GGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPF 120

Query: 121 DCSVCLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDVGFPSKIVGV 180
           DCSVCLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDVGFPSKIVGV
Sbjct: 121 DCSVCLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDVGFPSKIVGV 180

Query: 181 LDSVTHSSREIGEIQTGSFLGFLGDALDFAETKPDEPPPPPPPAEQTVVPIKLGKFKSLE 240
           LDSV+HSSREIGEIQTGSFLGFLGD LDFAE KPDEPPPPP  AEQTVVPIKLGKFKSLE
Sbjct: 181 LDSVSHSSREIGEIQTGSFLGFLGDVLDFAEMKPDEPPPPPAAAEQTVVPIKLGKFKSLE 240

Query: 241 SNGEGSSNNGKVDSRRCFSMGSFGYVMDENSSLQVPIRTPAVRKPARKKRNLPLMPGSLA 300
           SNGEGSSNNGKVDSRRCFSMGSFGYVMDENSSLQVPIRTPAVRK ARKKRNLPLMPGSLA
Sbjct: 241 SNGEGSSNNGKVDSRRCFSMGSFGYVMDENSSLQVPIRTPAVRKAARKKRNLPLMPGSLA 300

Query: 301 AMSECDCESRREFNFTELNEKV---------ESFVEEKVGGANQAGSENGMGMTEEENGR 360
           AMSECDCESRREFNFTELNEKV         ESFVEEKVGG NQ  SENGMGM EEE  R
Sbjct: 301 AMSECDCESRREFNFTELNEKVESFRHGSLKESFVEEKVGGTNQPRSENGMGMAEEEYRR 360

Query: 361 RNSSEFVENRRSFVRRTLQWVMGKNTKNSRIVHSSFSTNDDHSDCSV 395
           RNS E VENRRSFVRRTLQWV+GKNTKNSRIVHSSFSTNDDH+DCSV
Sbjct: 361 RNSLECVENRRSFVRRTLQWVIGKNTKNSRIVHSSFSTNDDHADCSV 402

[Close]

BLAST of Carg23479 vs. ExPASy TrEMBL
Match: A0A0A0LH59 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G047810 PE=4 SV=1)

HSP 1 Score: 563.9 bits (1452), Expect = 5.2e-157
Identity = 313/431 (72.62%), Postives = 337/431 (78.19%), Query Frame = 0


Query: 1   MAILSNPIS--PPPPPPPD------FNFDNQVSPTILIAIIILSIILFFSALLLLLLRFF 60
           MA LS PIS  P PPP PD      FN DN+VSPTIL+AIIIL+II FFS LL LLLRFF
Sbjct: 1   MATLSQPISNFPLPPPSPDTQSDGGFNLDNEVSPTILLAIIILAIIFFFSGLLHLLLRFF 60

Query: 61  LKPQIRTDPEDSAGGTAVDGGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLK 120
            KPQIRTDPEDS   TA DGGASAFQGQL+QLFHLHDAGVDQSFIDTLPVFLYKAIIGLK
Sbjct: 61  HKPQIRTDPEDS---TAGDGGASAFQGQLRQLFHLHDAGVDQSFIDTLPVFLYKAIIGLK 120

Query: 121 LDPFDCSVCLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDV----- 180
           LDPFDCSVCLCEFQPNDKLRLLTKCSHAFHM+CIDTWLL+HSTCPLCRA L+SD      
Sbjct: 121 LDPFDCSVCLCEFQPNDKLRLLTKCSHAFHMDCIDTWLLTHSTCPLCRASLVSDFAAING 180

Query: 181 GFPSKIVGVLDSVTHSSREIGEIQTGSFLGFLGDALDFAETKPDEPPPPPPPAEQTVVPI 240
           GF S IVGVL+S ++SSREIGE+ TGSFLGFLGD  DF E K +E   PP    +TVVPI
Sbjct: 181 GFSSPIVGVLESASNSSREIGEVHTGSFLGFLGDVSDFTELKTEE---PPATGAETVVPI 240

Query: 241 KLGKFKSLESNGEGSSNNGKVDSRRCFSMGSFGYVMDENSSLQVPIRTPAVRKPARKKRN 300
           KLGKFK+LESNGEGSSNN  V SRRCFSMGSFGYVMDENSSLQVPIRTPAVRK  RKK++
Sbjct: 241 KLGKFKNLESNGEGSSNNSNVGSRRCFSMGSFGYVMDENSSLQVPIRTPAVRKQVRKKKD 300

Query: 301 LPLMPGSLAAMSECDCESRREFNFTELNEKVESF--------VEEKVGGA---------- 360
           LPLM GS AA+SECDCESRREFNF EL+ +VESF         EEKV GA          
Sbjct: 301 LPLMLGSRAAISECDCESRREFNFEELSGRVESFRHGNSKDSCEEKVAGAGDRVAVMDLS 360

Query: 361 ------------NQAGSENGMGMTEEENGRRNSSEFVENRRSFVRRTLQWVMGKNTKNSR 389
                       N+  SENGMGM +EEN RRNS EFVENR SFVRRTLQW+MGKN  N+R
Sbjct: 361 RRAFSFHFPANRNRPRSENGMGMMDEENQRRNSLEFVENRPSFVRRTLQWLMGKN--NNR 420

[Close]

BLAST of Carg23479 vs. ExPASy TrEMBL
Match: A0A5D3CK86 (RING-H2 finger protein ATL13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00150 PE=4 SV=1)

HSP 1 Score: 555.8 bits (1431), Expect = 1.4e-154
Identity = 309/431 (71.69%), Postives = 336/431 (77.96%), Query Frame = 0


Query: 1   MAILSNPIS--PPPPPPPD------FNFDNQVSPTILIAIIILSIILFFSALLLLLLRFF 60
           MA  S PIS  P PPP P+      FN D++VSPTIL+AIIIL+II FFS LL LLLRFF
Sbjct: 1   MATPSQPISNLPLPPPSPETQSDGGFNLDSEVSPTILLAIIILAIIFFFSGLLHLLLRFF 60

Query: 61  LKPQIRTDPEDSAGGTAVDGGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLK 120
            KPQIRTD EDS   TA DGGASAFQGQL+QLFHLHDAGVDQSFIDTLPVFLYKAIIGLK
Sbjct: 61  HKPQIRTDLEDS---TAGDGGASAFQGQLRQLFHLHDAGVDQSFIDTLPVFLYKAIIGLK 120

Query: 121 LDPFDCSVCLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDV----- 180
           LDPFDCSVCLCEFQPNDKLRLLTKCSHAFHM+CIDTWLL+HSTCPLCRA L+SD      
Sbjct: 121 LDPFDCSVCLCEFQPNDKLRLLTKCSHAFHMDCIDTWLLTHSTCPLCRASLVSDFAAING 180

Query: 181 GFPSKIVGVLDSVTHSSREIGEIQTGSFLGFLGDALDFAETKPDEPPPPPPPAEQTVVPI 240
           GF S IVGVL+S ++SSREIGE+ TGSFLGFLGD  DF E K +E   PP    +TVVPI
Sbjct: 181 GFSSPIVGVLESASNSSREIGEVHTGSFLGFLGDVSDFTELKTEE---PPATGAETVVPI 240

Query: 241 KLGKFKSLESNGEGSSNNGKVDSRRCFSMGSFGYVMDENSSLQVPIRTPAVRKPARKKRN 300
           KLGKFK+LESNGEGSSNNG V SRRCFSMGSFGYVMDENSSLQVPIRTPAVRKP RKK++
Sbjct: 241 KLGKFKNLESNGEGSSNNGNVGSRRCFSMGSFGYVMDENSSLQVPIRTPAVRKPVRKKKD 300

Query: 301 LPLMPGSLAAMSECDCESRREFNFTELNEKVESF--------VEEKVGGA---------- 360
           LPLM GS AA+SECDCESRR+FNF EL+ +VESF         EEKV GA          
Sbjct: 301 LPLMLGSRAAISECDCESRRDFNFEELSGRVESFRHGNSKDSCEEKVAGAGDRLPVMDLT 360

Query: 361 ------------NQAGSENGMGMTEEENGRRNSSEFVENRRSFVRRTLQWVMGKNTKNSR 389
                       N+  SENGMG  +EEN RRNS EFVENR SFVRRTLQW+MGKN  N+R
Sbjct: 361 RRAFSFHFPANRNRPRSENGMGTMDEENQRRNSLEFVENRPSFVRRTLQWLMGKN--NNR 420

[Close]

BLAST of Carg23479 vs. ExPASy TrEMBL
Match: A0A1S3BUP8 (RING-H2 finger protein ATL13 OS=Cucumis melo OX=3656 GN=LOC103493377 PE=4 SV=1)

HSP 1 Score: 545.0 bits (1403), Expect = 2.5e-151
Identity = 304/431 (70.53%), Postives = 331/431 (76.80%), Query Frame = 0


Query: 1   MAILSNPIS----PPPPPPPD----FNFDNQVSPTILIAIIILSIILFFSALLLLLLRFF 60
           MA  S PIS    PPP P       FN D++VSPTIL+AIIIL+II FFS LL LLLRFF
Sbjct: 1   MATPSQPISNLSLPPPSPETQSDGGFNLDSEVSPTILLAIIILAIIFFFSGLLHLLLRFF 60

Query: 61  LKPQIRTDPEDSAGGTAVDGGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLK 120
            KPQIRTD EDS   TA DGGASAFQGQL+QLFHLHDAGVDQSFIDTLPVFLYKAIIGLK
Sbjct: 61  HKPQIRTDLEDS---TAGDGGASAFQGQLRQLFHLHDAGVDQSFIDTLPVFLYKAIIGLK 120

Query: 121 LDPFDCSVCLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDV----- 180
           LDPFDCSVCLCEFQPNDKLRLLTKCSHAFHM+CIDTWLL+HSTCPLCRA L+SD      
Sbjct: 121 LDPFDCSVCLCEFQPNDKLRLLTKCSHAFHMDCIDTWLLTHSTCPLCRASLVSDFAAISG 180

Query: 181 GFPSKIVGVLDSVTHSSREIGEIQTGSFLGFLGDALDFAETKPDEPPPPPPPAEQTVVPI 240
           GF S IVGVL+S ++SSREIGE+ TGSFLGFLGD  DF E K +E   PP    +TVVPI
Sbjct: 181 GFSSPIVGVLESASNSSREIGEVHTGSFLGFLGDVSDFTELKTEE---PPATGAETVVPI 240

Query: 241 KLGKFKSLESNGEGSSNNGKVDSRRCFSMGSFGYVMDENSSLQVPIRTPAVRKPARKKRN 300
           KLGKFK+LE NGEGSSNNG V SRRCFSMGSFGYVMDENSSLQVPIRTPAVRKP RKK++
Sbjct: 241 KLGKFKNLECNGEGSSNNGNVGSRRCFSMGSFGYVMDENSSLQVPIRTPAVRKPVRKKKD 300

Query: 301 LPLMPGSLAAMSECDCESRREFNFTELNEKVESF--------VEEKVGGA---------- 360
           LPLM GS AA+SECDCESRR+FNF EL+ +VESF         EEKV G           
Sbjct: 301 LPLMLGSRAAISECDCESRRDFNFEELSGRVESFRHGNSKDSCEEKVAGTGDRLPVMDLT 360

Query: 361 ------------NQAGSENGMGMTEEENGRRNSSEFVENRRSFVRRTLQWVMGKNTKNSR 389
                       N+  SENGMG  +EEN RR+S E VENR SFVRRTLQW+MGKN  N+R
Sbjct: 361 RRAFSFHFPANRNRPRSENGMGTMDEENQRRSSLEIVENRPSFVRRTLQWLMGKN--NNR 420

[Close]

BLAST of Carg23479 vs. TAIR 10
Match: AT4G30400.1 (RING/U-box superfamily protein )

HSP 1 Score: 258.5 bits (659), Expect = 9.0e-69
Identity = 198/467 (42.40%), Postives = 255/467 (54.60%), Query Frame = 0


Query: 6   NPISPPPPPP------PDFNFDNQVSPTILIAIIILSIILFFSALLLLLLRFFLKPQIRT 65
           +P S P  PP       +F+ ++++SP+IL+ IIILSII F S LL LL+RF L P  R 
Sbjct: 23  SPSSLPQEPPLSLRSSANFDLNSKISPSILLIIIILSIIFFISGLLHLLVRFLLTPSSR- 82

Query: 66  DPEDSAGGTAVDGGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPFDCS 125
           D ED           +A QGQLQQLFHLHD+GVDQSFIDTLPVF YK+IIGLK  PFDC+
Sbjct: 83  DRED------YFDNVTALQGQLQQLFHLHDSGVDQSFIDTLPVFHYKSIIGLKNYPFDCA 142

Query: 126 VCLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDVGF----PSKIVG 185
           VCLCEF+  DKLRLL KCSHAFHM+CIDTWLLSHSTCPLCR+ L+SD+       S  + 
Sbjct: 143 VCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRSSLLSDLSSHQDPRSSFLL 202

Query: 186 VLDSVT-HSSREIG-------------EIQTGS-FLGFLGDALDFAETKPDEPPPPP--- 245
           VL+S + HSSREIG             +I   S  LG +G+  D   T+ D         
Sbjct: 203 VLESASDHSSREIGGDRDSAACVAANDDIDVSSAHLGLVGNN-DLGSTRIDSGHGDQYLD 262

Query: 246 ---PPAEQTVVP--IKLGKFKSLESNGEGSSNNGKV------DSRRCFSMGSFGYVMDEN 305
                +   VVP  +KLGKF++++  GEG+S+N  +      D RRCFSMGS+ Y+MDE 
Sbjct: 263 GELGGSVGKVVPFSVKLGKFRNIDI-GEGTSSNNNIGNSSSLDERRCFSMGSYEYIMDEE 322

Query: 306 SSLQVPIRTPAVRKPARKKRNLPLMPGSLAAMSECDCESRREFNFT-------------- 365
           ++L+V + T   +K + K R L   PG   AMSEC  +      F+              
Sbjct: 323 TTLKVHVST---KKQSSKNRGL---PGHRTAMSECGFDPTGRLKFSGSGSMRIVEEAAEK 382

Query: 366 -------------------ELNEKVE-----SFVEEKVGGA------NQAGSENGM--GM 387
                              E + KV+     S V    G A      NQ    + M    
Sbjct: 383 NVVERESFSVSKIWLRGKKEKHSKVQGKEDSSLVSSSSGRAFSFRLSNQRNHPDAMIESG 442

[Close]

BLAST of Carg23479 vs. TAIR 10
Match: AT2G18650.1 (RING/U-box superfamily protein )

HSP 1 Score: 238.0 bits (606), Expect = 1.3e-62
Identity = 169/424 (39.86%), Postives = 233/424 (54.95%), Query Frame = 0


Query: 1   MAILSNPISPPPPPP--------PDFNFDNQVSPTILIAIIILSIILFFSALLLLLLRFF 60
           M    N IS  PPPP           N +++++P IL+ IIILSII F S LL +L++F 
Sbjct: 8   MKSTQNLISSSPPPPLIPLKSNTSLSNLNSKITPNILLIIIILSIIFFISGLLHILVKFL 67

Query: 61  LKPQIRTDPEDSAGGTAVDGGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLK 120
           L P  R   ED           +A QGQLQQLF+LHD+GVDQS IDTLPVF YK+I+GLK
Sbjct: 68  LTPS-RESRED------YFDNVTALQGQLQQLFNLHDSGVDQSLIDTLPVFHYKSIVGLK 127

Query: 121 LDPFDCSVCLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDV----G 180
           + PFDC VCLCEF+  DKLRLL KCSHAFH+ECIDTWLLSHSTCPLCR+ L+S       
Sbjct: 128 ISPFDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNLLSGFSSHHN 187

Query: 181 FPSKIVGVLDSVTHSSREIGEIQTGSFLGFLGDALDFAET-------KPDEPPPPPPPAE 240
             S  + VL+S   S   +  +++ S LG+  D  + +E+       K  +P       +
Sbjct: 188 LSSSYLLVLESEQSSRDMVPVLESNSQLGY--DVNNDSESTRIRSGRKSCDPDGDMDGLD 247

Query: 241 QTVVP--IKLGKFKSLESNGEG--------SSNNGKVDSRRCFSMGSFGYVMDENSSLQV 300
           + VVP  +KLGKF++++  GEG        S N+  VD RRC SMGS+ Y+MD+ ++L+V
Sbjct: 248 EKVVPLEVKLGKFRNIDHVGEGSDQKKNSISGNSKNVDGRRCLSMGSYEYIMDQEATLKV 307

Query: 301 PIRTPAVRKPARKKRNLPLMPGSLAAMSECDCESRREFNFTELNEKVESFVEEKVGGANQ 360
            + T   +K + K R    +P     MSEC  +   +     + E+ ESF   K+    +
Sbjct: 308 HVST---KKLSGKDR----VPSHRTVMSECGFDPTVKGIEKSVVER-ESFSLSKIWLRGK 367

Query: 361 AGSENGMGMTE--------------------EENGRRNSSEFVENRR-SFVRRTLQWVMG 375
              + G    +                    EE+ +  +SE +E +  SF RRT+ W+ G
Sbjct: 368 KEKQKGTSARDSDCSFVSSSSLRFPNHRIPPEESLKSENSESLETKTPSFARRTMHWLAG 414

[Close]

BLAST of Carg23479 vs. TAIR 10
Match: AT5G40250.1 (RING/U-box superfamily protein )

HSP 1 Score: 197.6 bits (501), Expect = 1.9e-50
Identity = 121/283 (42.76%), Postives = 166/283 (58.66%), Query Frame = 0


Query: 8   ISPPPPPPPDFNFDNQVSPTILIAIIILSIILFFSALLLLLLRFFLKPQIRTDPEDSAGG 67
           +SPP PPPP  +  N++SP +L  I+IL+++ F S LL LL+RF +K    T    S   
Sbjct: 27  LSPPSPPPP--SSGNRISPAVLFVIVILAVLFFISGLLHLLVRFLIKHPSATASSRSNRF 86

Query: 68  TAVDGGASAFQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAII---------GLKLDPFDC 127
             +   + A Q QLQQLFHL+D+G+DQ+FID LPVF YK I+         G   +PFDC
Sbjct: 87  PEI-STSDALQRQLQQLFHLNDSGLDQAFIDALPVFHYKEIVGSAGGGGGNGAAQEPFDC 146

Query: 128 SVCLCEFQPNDKLRLLTKCSHAFHMECIDTWLLSHSTCPLCRAGLISDVGFPSKIVGVLD 187
           +VCLCEF   DKLRLL  CSHAFH+ CIDTWL S+STCPLCR  L S  GF       ++
Sbjct: 147 AVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNSTCPLCRGTLFSP-GFS------ME 206

Query: 188 SVTHSSREIGEIQTGSFLGFLGDALDFAETKPDEPPPPPPPAEQTVVPIKLGKFKSLES- 247
           +      +I E + G         ++  E             E+ V+P++LGKFK L++ 
Sbjct: 207 NPMFDFDDIREDEEGVTENGSQKTMEIQEI----------VVEKGVLPVRLGKFKRLDNV 266

Query: 248 -NGE-------GSSNNGKVDSRRCFSMGSFGYVMDENSSLQVP 273
            NG+       G +++  +D+RRCFSMGS+ Y++  NS L+VP
Sbjct: 267 GNGQGQDVVAGGETSSSNLDARRCFSMGSYQYILG-NSELKVP 288

[Close]

BLAST of Carg23479 vs. TAIR 10
Match: AT1G23980.1 (RING/U-box superfamily protein )

HSP 1 Score: 189.1 bits (479), Expect = 6.7e-48
Identity = 113/257 (43.97%), Postives = 158/257 (61.48%), Query Frame = 0


Query: 21  DNQVSPTILIAIIILSIILFFSALLLLLLRFFLKPQ---IRTDPEDSAGGTAVDGGASAF 80
           +N++SP IL  I++LS+I F  ++L LL+R++LK +   + + P +S         +  +
Sbjct: 46  NNRISPIILFIIVLLSVIFFICSILHLLVRYYLKKKRSNLSSSPNESNQNPEF-SDSDTY 105

Query: 81  QGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPFDCSVCLCEFQPNDKLRLLTKC 140
           Q QLQQLFHLHD+G+DQ+ ID LPVFLYK I G K +PFDC+VCLCEF  +DKLRLL  C
Sbjct: 106 QRQLQQLFHLHDSGLDQALIDALPVFLYKEIKGTK-EPFDCAVCLCEFSEDDKLRLLPNC 165

Query: 141 SHAFHMECIDTWLLSHSTCPLCRAGLISDVGFPSKIVGVLDSVTHSSREIGEIQTGSFLG 200
           SHAFH++CIDTWLLS+STCPLCR              G L S+ H   E  +   G F G
Sbjct: 166 SHAFHIDCIDTWLLSNSTCPLCR--------------GTLFSLGHQF-EYPDFNFGFFAG 225

Query: 201 FLGDALDFAETKPDEPPPPPPPAEQTVVPIKLGKFKS--LESNGE------GSSNNGKVD 260
              D        P + P      ++ V  ++LGKF+S  + +NGE      G +++  +D
Sbjct: 226 --DDGGGGVRVSPVQKPAENEIGKR-VFSVRLGKFRSSNIVNNGEVVVGGGGETSSSSLD 282

Query: 261 SRRCFSMGSFGYVMDEN 267
           +RRCFSMGS+ Y++ E+
Sbjct: 286 NRRCFSMGSYQYIVAES 282

[Close]

BLAST of Carg23479 vs. TAIR 10
Match: AT5G57750.1 (RING/U-box superfamily protein )

HSP 1 Score: 154.5 bits (389), Expect = 1.8e-37
Identity = 80/148 (54.05%), Postives = 106/148 (71.62%), Query Frame = 0


Query: 17  DFNFDNQVSPTILIAIIILSIILFFSALLLLLLRFFLKPQIRTDPEDSAGGTAVDGGASA 76
           DF+    +SP +L+ I +LSII F +AL+ LL++F  +PQ R D  D+  G  +   ++A
Sbjct: 25  DFDLICMISPIVLLYITLLSIIFFVAALIHLLVKFLHRPQTRLD--DAYDG--ITESSTA 84

Query: 77  FQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKLDPFDCSVCLCEFQPNDKLRLLTK 136
            QG+ Q  F+LHDA +DQSFID LP+  YK +IGL+ D  DC+VCL EF   D+LRLL K
Sbjct: 85  LQGRYQTRFNLHDAEIDQSFIDALPLLHYKTMIGLRHDLSDCAVCLREFTAEDELRLLPK 144

Query: 137 CSHAFHMECIDTWLLSHSTCPLCRAGLI 165
           CSHAFH+ECIDTWLL++STCPLCR  L+
Sbjct: 145 CSHAFHVECIDTWLLTNSTCPLCRDNLL 168

The following BLAST results are available for this feature:

BLAST of Carg23479 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021020.1	4.3e-222	100.00	putative RING-H2 finger protein ATL49, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAG6586189.1	2.8e-221	99.49	putative RING-H2 finger protein ATL49, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022938053.1	4.6e-216	97.97	RING-H2 finger protein ATL13-like [Cucurbita moschata]	[more]
XP_023538250.1	4.3e-206	92.42	RING-H2 finger protein ATL13-like [Cucurbita pepo subsp. pepo]	[more]
XP_022965405.1	1.2e-200	91.15	RING-H2 finger protein ATL13-like [Cucurbita maxima]	[more]

BLAST of Carg23479 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940Q4	1.3e-67	42.40	RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2	[more]
Q9ZV53	1.8e-61	39.86	Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana OX=3702 GN=ATL49 P...	[more]
Q9FL07	2.7e-49	42.76	RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1	[more]
Q8GW38	9.4e-47	43.97	RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1	[more]
Q9FHG8	2.6e-36	54.05	Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana OX=3702 GN=ATL50 P...	[more]

BLAST of Carg23479 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FHR6	2.2e-216	97.97	RING-H2 finger protein ATL13-like OS=Cucurbita moschata OX=3662 GN=LOC111444259 ...	[more]
A0A6J1HNL1	5.9e-201	91.15	RING-H2 finger protein ATL13-like OS=Cucurbita maxima OX=3661 GN=LOC111465320 PE...	[more]
A0A0A0LH59	5.2e-157	72.62	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G047810 P...	[more]
A0A5D3CK86	1.4e-154	71.69	RING-H2 finger protein ATL13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3BUP8	2.5e-151	70.53	RING-H2 finger protein ATL13 OS=Cucumis melo OX=3656 GN=LOC103493377 PE=4 SV=1	[more]

BLAST of Carg23479 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30400.1	9.0e-69	42.40	RING/U-box superfamily protein	[more]
AT2G18650.1	1.3e-62	39.86	RING/U-box superfamily protein	[more]
AT5G40250.1	1.9e-50	42.76	RING/U-box superfamily protein	[more]
AT1G23980.1	6.7e-48	43.97	RING/U-box superfamily protein	[more]
AT5G57750.1	1.8e-37	54.05	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 118..159 e-value: 4.5E-5 score: 32.9
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 117..160 e-value: 1.3E-12 score: 47.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 118..160 score: 12.607302
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 80..164 e-value: 4.4E-20 score: 73.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 329..353
None	No IPR available	PANTHER	PTHR45768:SF53	ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED	coord: 5..313
None	No IPR available	PANTHER	PTHR45768	E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE	coord: 5..313
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 117..160 e-value: 8.38986E-19 score: 77.3503
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 100..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23479-RA	Carg23479-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0031625	ubiquitin protein ligase binding