Carg23423 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg23423
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Superoxide dismutase [Cu-Zn]
Location	Carg_Chr05: 10611999 .. 10615460 (+)
RNA-Seq Expression	Carg23423
Synteny	Carg23423

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATGTTCGCTACCGATTCCTCCAGCCTCCGTGCATACAAATCTCGCGCCACTTCAATGCTCTTTAACTTCTCTTTCCACTGCAGTGAAGCTCATCCTTGGTAATGATTCTCTCCCATTTCTTCTGTAATTTCAGTGTTCTTTTATCTCTTTTTTTGCCGGATTATCGAATTCTGTGGTGAAGCTAAATTGTTGTATCCGATTTTTGTTTGAATTCTGTTTTCGACTTTTTTTTTTCTTTTCTTATAATTGCGTATTGAAGATTTAGGGATTGCGTTGTTTATGCTTCATTACTTTCCAGTTTCATATGGTTGTTACGTGTTATAACTCTTCGCTGAGATTTATATGGTTCTGATGGCTGTGTTTGATACCATTTCAATTTCTAAGTTACCTATTTTGAATAGAAAGAAGATTCATGTTGATTTCTGGAATGAAAACAGGCGCCTGATAGTTATTGTTTACTGTTAATTAGAAAGAGAGTTCATGATGATTTCTGGTACAAAAGCAGCTCACTATACTTGGAAATGAGCTTTCACTTTTGTTGACCTCGGGCTAAGTCGATACCTCAAACAATGGGGGGAGAGAAGAGAGCCTCAGTATGATAATGAAAGAAAAAGGGCGTCTGCACGGGCGGAATGGATGAGCGAAAGGTGCCATGCCATGGAGTGAGGAATATCTCGAGTCTCATGTAAGACAAGAAACAAAACCTCGAGGTGCTGCCCAGGAACTGCGGGACCTTCTCGAACACAGGATAGGCAATTGAGATCTCGAACTAGCCTATTCTATTTACCTTGTAAAAGAGAGAAAGAAAGAAGGGATAGGAGAATTCATCTTTCTTCTTCTTTTACACGTTTCGAGCTCCCGAAGTCAATATTTAGCACCTTCCTTCTTAGGTTGTTATAAATGGTATCAGAGCCAGACATCGAGTGATGCCAATGAAGAGGCTGAGCCCTGAAGGGGGTGGACACGAAATGGTGTGCCAGTAAGGACATTGGGCCCCGAAGGGGGTAGATTGAGGGGTCCCACATCGATTTGAGAAGAGAACGAGTGTCATTGAGGACGCTGGCCCTGAAGGGGTGGTGGGGTGGATTGTGAGATCCCACCTCAGTTGGGGAGGAGAACGAAACCAAACTGATGAGCTCTTCACCAACCTGGTGTAACAATGTCATAACTGACTACAACTTGAACTGATTTAAGATGTTGAAGATTAGCATTGATCTTGTCCCCAAAATTTGGCCACTGGGATGACTTTTTGTGTCTTTCAGATTTTTGCTTTAGTGAATTCTCATTGTTCGTTGACTATCACCATGAAGAATATGTTCAAAAGTGAAATTTCCTTGGTTTACTTTGTTGATCAGCATCCAATTTTACCAGTTATTTCAGCTCTTCTGATAACCTTCATTGGGTTTGAGTTCAGTTAACGCAAAACAATGGTGAAAGCTGTTGCTGTTCTCGAGAGCAATCAGGGAGTGAAGGGAACCGTCTTCTTTAACCAAAATGGCAATGGTAGCTCAAATCGTAGTTTGAAATTTTAATTCATACAGATTTTTTGTTTTATTGTTTTTTTTCATAGTTAGTATATTTTTCAGGTCCAACTACAGTTAGAGGAAATATTTCTGGCCTTACGCCAGGGCTTCATGGTTTCCATGTTCATGCCCTCGGGGACACTACCAATGGTTGCTCATCGACTGGTACGTTCTCATGAGTAACACCCTTTTAGTTCCTCAATGTTAATTACAGAGTGTCCATTGGAACTATTGGCACATTATGACTCTACTTGCAAGCAAATTGCTCGCAGGGCCTCATTTCAACCCTGAAGGCAAAGATCATGGTGCACCTGATGATGAGAATCGTCATGTTGGTGATCTAGGAAATTTGGTTGCTGGTGATGACGGTGTGTTTAATACTGTTCCATATTGCATTTCATTCTCCCTGAATTTTTTTTTTAGTAAACTGGACCCAAATGATTAGCCCCTCTAAAATGCATTCCACGTCGGTTAGGGAGGAGAACAAAACATTCTTTATAAGGGCGTGAAAACTTCTCTCCCTAGTAGACGCGTTTTAAAATCCTTGAGGGGAATCCCAAAAGGGAGAGCCCAAAGACGACAATATCGATTAGCGATGGGCTTGGGTTGTTACACCTCATGATTCCAGCTTCCTCCCCATCTCCTATTGATAACAATATTAGAAAAAATCATGAATTTCATGTTAAAGCACTCTTTCTTTTCCTTGTTTAGGATTAATTTGACATGATTGTAAAGATGGTTACTGTCTATTATACAGGTACTGCTACTTTCTCTATTATTGACAAACAGGTTTGGACAATTTAATGTTTATTTGGATGTTTCACCATCTCTACTAAAAGTCTCAGCTAGTGAGCATCATTTGTTTCTATGTTATGCAGATTTCCCTTGTTGGACCAAATTCCGTTCTTGGAAGATCTATTGTTGTCCACGCCGATCCCGATGATCTTGGCAGGGGTAATATTATTTTATAAATATTCATAGCTATATTTCCAGAAAGAATCCCACAGATTGTAACTTATTAATATGATCTTCTTCGAATTCAGTGATATCCTTTCGGGGTTCTTTGCTTTTTTCACTTTGTACGTGTAGACATCCATTTTCTTCACATTTATATAACTAACTTTACTTGAATCTTAAACCATGAGATTATTTAATGTGCTGGAAGTATCGATCTTTGAAATGTATGTTCCCTTCGATTAATTATAAGCCTCCCCTTTGTCTTTGCACGTCAAGTAGGTGACCTCCACCAGGATGACCAAATAAAGAAATCTGAAGCATAATCTGTGAACTGTTCTGATCTTGTCTGCAGGTCAAACCGAACTTAGCCTGACCACTGGCAATGCGGGTGAGAGAATTGCTTGTGGTAAGTTACAAAATTTCTCATTACTGGTTGGCTTTGTAATAATGGTTGTGTCCCCAAATAAATCATTGAGGACGATATCACGACGTTGCACGGTTGAAAAAGTATAACCCATATTTTAATATGCACATAGCGTATTGATTGGGACTTTTTGTGGGACAAATCTGTTCTCGAGCAACTTTTTAGTTGGCATAAACATCCATTATTCGGTGTTTCTTGCAGGCGTTATCGGGCTGCAAGAGTGAAGTACATTTCGACCGCCATGGTTTAATGATGAGCGATGAAGTAGCGGAGTATGCAAAGCTATACTTTGGTTTCCAACACATATACAGTGTATTAAACTTGGTATGTGAAAAGGTATGAAAAGGCATGGTGAAGTTGGAAGTCTTATATCAGAAGTAAATAAGATTAGAGTTTATTGTATCAATACTCCACTTCATATAGATTTACATTATAAACAAATGATATTTTGCTCCTTTCAACAATCTTATGCAATTATAAAGGTTTTTAAATCATAGATTACATGTAATTAAATATTATGAATCCAAGGTTAATGGAAACTATTCTAAACAACATAG

mRNA sequence

TATGTTCGCTACCGATTCCTCCAGCCTCCGTGCATACAAATCTCGCGCCACTTCAATGCTCTTTAACTTCTCTTTCCACTGCAGTGAAGCTCATCCTTGTTATTTCAGCTCTTCTGATAACCTTCATTGGGTTTGAGTTCAGTTAACGCAAAACAATGGTGAAAGCTGTTGCTGTTCTCGAGAGCAATCAGGGAGTGAAGGGAACCGTCTTCTTTAACCAAAATGGCAATGGTCCAACTACAGTTAGAGGAAATATTTCTGGCCTTACGCCAGGGCTTCATGGTTTCCATGTTCATGCCCTCGGGGACACTACCAATGGTTGCTCATCGACTGGGCCTCATTTCAACCCTGAAGGCAAAGATCATGGTGCACCTGATGATGAGAATCGTCATGTTGGTGATCTAGGAAATTTGGTTGCTGGTGATGACGGTACTGCTACTTTCTCTATTATTGACAAACAGATTTCCCTTGTTGGACCAAATTCCGTTCTTGGAAGATCTATTGTTGTCCACGCCGATCCCGATGATCTTGGCAGGGGTCAAACCGAACTTAGCCTGACCACTGGCAATGCGGGTGAGAGAATTGCTTGTGGCGTTATCGGGCTGCAAGAGTGAAGTACATTTCGACCGCCATGGTTTAATGATGAGCGATGAAGTAGCGGAGTATGCAAAGCTATACTTTGGTTTCCAACACATATACAGTGTATTAAACTTGGTATGTGAAAAGGTATGAAAAGGCATGGTGAAGTTGGAAGTCTTATATCAGAAGTAAATAAGATTAGAGTTTATTGTATCAATACTCCACTTCATATAGATTTACATTATAAACAAATGATATTTTGCTCCTTTCAACAATCTTATGCAATTATAAAGGTTTTTAAATCATAGATTACATGTAATTAAATATTATGAATCCAAGGTTAATGGAAACTATTCTAAACAACATAG

Coding sequence (CDS)

ATGGTGAAAGCTGTTGCTGTTCTCGAGAGCAATCAGGGAGTGAAGGGAACCGTCTTCTTTAACCAAAATGGCAATGGTCCAACTACAGTTAGAGGAAATATTTCTGGCCTTACGCCAGGGCTTCATGGTTTCCATGTTCATGCCCTCGGGGACACTACCAATGGTTGCTCATCGACTGGGCCTCATTTCAACCCTGAAGGCAAAGATCATGGTGCACCTGATGATGAGAATCGTCATGTTGGTGATCTAGGAAATTTGGTTGCTGGTGATGACGGTACTGCTACTTTCTCTATTATTGACAAACAGATTTCCCTTGTTGGACCAAATTCCGTTCTTGGAAGATCTATTGTTGTCCACGCCGATCCCGATGATCTTGGCAGGGGTCAAACCGAACTTAGCCTGACCACTGGCAATGCGGGTGAGAGAATTGCTTGTGGCGTTATCGGGCTGCAAGAGTGA

Protein sequence

MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGQTELSLTTGNAGERIACGVIGLQE

Homology

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BLAST of Carg23423 vs. NCBI nr
Match: KAG7030279.1 (Superoxide dismutase [Cu-Zn] 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 310.8 bits (795), Expect = 6.3e-81
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 153
           DPDDLGRGQTELSLTTGNAGERIACGVIGLQE
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 152

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BLAST of Carg23423 vs. NCBI nr
Match: XP_022999148.1 (superoxide dismutase [Cu-Zn] 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 308.5 bits (789), Expect = 3.1e-80
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGL PGLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLIPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 153
           DPDDLGRGQTELSLTTGNAGERIACGVIGLQE
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 152

[Close]

BLAST of Carg23423 vs. NCBI nr
Match: XP_022946180.1 (superoxide dismutase [Cu-Zn]-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 307.8 bits (787), Expect = 5.4e-80
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVG NSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 153
           DPDDLGRGQTELSLTTGNAGERIACGVIGLQE
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 152

[Close]

BLAST of Carg23423 vs. NCBI nr
Match: XP_022999146.1 (superoxide dismutase [Cu-Zn] 1-like isoform X1 [Cucurbita maxima] >XP_022999147.1 superoxide dismutase [Cu-Zn] 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 302.8 bits (774), Expect = 1.7e-78
Identity = 151/156 (96.79%), Postives = 151/156 (96.79%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGL PGLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLIPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIAC----GVIGLQE 153
           DPDDLGRGQTELSLTTGNAGERIAC    GVIGLQE
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACVFLAGVIGLQE 156

[Close]

BLAST of Carg23423 vs. NCBI nr
Match: XP_022946178.1 (superoxide dismutase [Cu-Zn] 1-like isoform X1 [Cucurbita moschata] >XP_022946179.1 superoxide dismutase [Cu-Zn] 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 302.0 bits (772), Expect = 2.9e-78
Identity = 151/156 (96.79%), Postives = 151/156 (96.79%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVG NSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIAC----GVIGLQE 153
           DPDDLGRGQTELSLTTGNAGERIAC    GVIGLQE
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACVFLAGVIGLQE 156

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BLAST of Carg23423 vs. ExPASy Swiss-Prot
Match: P93258 (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum OX=3544 GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 8.6e-65
Identity = 116/151 (76.82%), Postives = 129/151 (85.43%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAV VL S++GV GTV F Q G+GPTTV GN+SGL PGLHGFHVHALGDTTNGC STG
Sbjct: 1   MVKAVVVLSSSEGVSGTVQFTQEGSGPTTVTGNVSGLRPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP GK+HGAP+DE RH GDLGN+  GDDGTATF+IID QI L GPNS++GR++VVHA
Sbjct: 61  PHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQ 152
           DPDDLGRG  ELS  TGNAG R+ACGVIGLQ
Sbjct: 121 DPDDLGRGGHELSKATGNAGGRVACGVIGLQ 151

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BLAST of Carg23423 vs. ExPASy Swiss-Prot
Match: Q07796 (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas OX=4120 GN=SODCC PE=2 SV=2)

HSP 1 Score: 244.6 bits (623), Expect = 7.3e-64
Identity = 112/151 (74.17%), Postives = 131/151 (86.75%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVL S++GV GT+FF+Q G+GPTTV GN+SGL PGLHGFHVHALGDTTNGC STG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP GK+HGAP D+NRH GDLGN+  G+DGTA+F+I DKQI L G NSV+GR++VVH 
Sbjct: 61  PHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHG 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQ 152
           DPDDLG+G  ELS +TGNAG R+ACG+IGLQ
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151

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BLAST of Carg23423 vs. ExPASy Swiss-Prot
Match: Q42611 (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea OX=3707 GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 243.8 bits (621), Expect = 1.2e-63
Identity = 113/151 (74.83%), Postives = 128/151 (84.77%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           M K V VL S++GVKGT+FF Q GNG TTV G +SGL PGLHGFHVHALGDTTNGC STG
Sbjct: 1   MGKGVRVLNSSEGVKGTIFFTQEGNGTTTVTGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGK HGAP+D NRH GDLGN+  GDDGTATF+I D QI L GPNS++GR++VVHA
Sbjct: 61  PHFNPEGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDSQIPLDGPNSIVGRAVVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQ 152
           +PDDLG+G  ELSLTTGNAG R+ACG+IGLQ
Sbjct: 121 EPDDLGKGGHELSLTTGNAGGRVACGIIGLQ 151

[Close]

BLAST of Carg23423 vs. ExPASy Swiss-Prot
Match: P09678 (Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata OX=3716 GN=SODCC PE=1 SV=2)

HSP 1 Score: 243.8 bits (621), Expect = 1.2e-63
Identity = 112/151 (74.17%), Postives = 128/151 (84.77%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           M K VAVL S++GVKGT+FF   GNG TTV G +SGL PGLHGFHVHALGD TNGC STG
Sbjct: 1   MAKGVAVLNSSEGVKGTIFFTHEGNGATTVTGTVSGLRPGLHGFHVHALGDNTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP+GK HGAP+D NRH GDLGN++ GDDGTATF+I D QI L GPNS++GR+IVVHA
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNIIVGDDGTATFTITDSQIPLSGPNSIVGRAIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQ 152
           DPDDLG+G  ELSL+TGNAG R+ACG+IGLQ
Sbjct: 121 DPDDLGKGGHELSLSTGNAGGRVACGIIGLQ 151

[Close]

BLAST of Carg23423 vs. ExPASy Swiss-Prot
Match: C0HK70 (Superoxide dismutase [Cu-Zn] OS=Zingiber officinale OX=94328 PE=1 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 1.6e-63
Identity = 112/151 (74.17%), Postives = 131/151 (86.75%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVL S++GVKGT++F Q G+GPTTV G+I+GL PGLHGFHVHALGDTTNGC STG
Sbjct: 1   MVKAVAVLGSSEGVKGTIYFVQEGDGPTTVTGSITGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP GK+HGAP+DENRH GDLGN  AG+DG  T S++D QI L GPNS++GR++VVHA
Sbjct: 61  PHFNPAGKEHGAPEDENRHAGDLGNATAGEDGIVTVSVVDSQIPLSGPNSIIGRAVVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQ 152
           DPDDLG+G  ELS TTGNAG R+ACG+IGLQ
Sbjct: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151

[Close]

BLAST of Carg23423 vs. ExPASy TrEMBL
Match: A0A6J1KIS8 (Superoxide dismutase [Cu-Zn] OS=Cucurbita maxima OX=3661 GN=LOC111493618 PE=3 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.5e-80
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGL PGLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLIPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 153
           DPDDLGRGQTELSLTTGNAGERIACGVIGLQE
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 152

[Close]

BLAST of Carg23423 vs. ExPASy TrEMBL
Match: A0A6J1G334 (Superoxide dismutase [Cu-Zn] OS=Cucurbita moschata OX=3662 GN=LOC111450340 PE=3 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.6e-80
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVG NSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 153
           DPDDLGRGQTELSLTTGNAGERIACGVIGLQE
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 152

[Close]

BLAST of Carg23423 vs. ExPASy TrEMBL
Match: A0A6J1KC95 (Superoxide dismutase OS=Cucurbita maxima OX=3661 GN=LOC111493618 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 8.3e-79
Identity = 151/156 (96.79%), Postives = 151/156 (96.79%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGL PGLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLIPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIAC----GVIGLQE 153
           DPDDLGRGQTELSLTTGNAGERIAC    GVIGLQE
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACVFLAGVIGLQE 156

[Close]

BLAST of Carg23423 vs. ExPASy TrEMBL
Match: A0A6J1G326 (Superoxide dismutase OS=Cucurbita moschata OX=3662 GN=LOC111450340 PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.4e-78
Identity = 151/156 (96.79%), Postives = 151/156 (96.79%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVG NSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIAC----GVIGLQE 153
           DPDDLGRGQTELSLTTGNAGERIAC    GVIGLQE
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACVFLAGVIGLQE 156

[Close]

BLAST of Carg23423 vs. ExPASy TrEMBL
Match: A0A0A0LIH2 (Superoxide dismutase [Cu-Zn] OS=Cucumis sativus OX=3659 GN=Csa_2G013250 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 4.7e-74
Identity = 139/152 (91.45%), Postives = 144/152 (94.74%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGV G++FF+QNGNGPT + GNISGL  GLHGFHVHALGDTTNGC STG
Sbjct: 1   MVKAVAVLESNQGVSGSIFFSQNGNGPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGN+VAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 153
           DPDDLGRG TELSLTTGNAGERI CGVIGLQE
Sbjct: 121 DPDDLGRGGTELSLTTGNAGERIGCGVIGLQE 152

[Close]

BLAST of Carg23423 vs. TAIR 10
Match: AT1G08830.1 (copper/zinc superoxide dismutase 1 )

HSP 1 Score: 240.7 bits (613), Expect = 7.5e-64
Identity = 111/151 (73.51%), Postives = 127/151 (84.11%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           M K VAVL S++GV GT+FF Q G+G TTV G +SGL PGLHGFHVHALGDTTNGC STG
Sbjct: 1   MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP+GK HGAP+D NRH GDLGN+  GDDGTATF+I D QI L GPNS++GR++VVHA
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQ 152
           DPDDLG+G  ELSL TGNAG R+ACG+IGLQ
Sbjct: 121 DPDDLGKGGHELSLATGNAGGRVACGIIGLQ 151

[Close]

BLAST of Carg23423 vs. TAIR 10
Match: AT1G08830.2 (copper/zinc superoxide dismutase 1 )

HSP 1 Score: 240.7 bits (613), Expect = 7.5e-64
Identity = 111/151 (73.51%), Postives = 127/151 (84.11%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           M K VAVL S++GV GT+FF Q G+G TTV G +SGL PGLHGFHVHALGDTTNGC STG
Sbjct: 1   MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP+GK HGAP+D NRH GDLGN+  GDDGTATF+I D QI L GPNS++GR++VVHA
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQ 152
           DPDDLG+G  ELSL TGNAG R+ACG+IGLQ
Sbjct: 121 DPDDLGKGGHELSLATGNAGGRVACGIIGLQ 151

[Close]

BLAST of Carg23423 vs. TAIR 10
Match: AT2G28190.1 (copper/zinc superoxide dismutase 2 )

HSP 1 Score: 195.7 bits (496), Expect = 2.8e-50
Identity = 96/148 (64.86%), Postives = 110/148 (74.32%), Query Frame = 0


Query: 3   KAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTGPH 62
           KAVAVL+    V+G V   Q+ +GPTTV   I+GLTPG HGFH+H  GDTTNGC STGPH
Sbjct: 66  KAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPH 125

Query: 63  FNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADP 122
           FNP    HGAP+DE RH GDLGN+ A  DG A  +I+D QI L GPNSV+GR+ VVH   
Sbjct: 126 FNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELK 185

Query: 123 DDLGRGQTELSLTTGNAGERIACGVIGL 151
           DDLG+G  ELSLTTGNAG R+ACGVIGL
Sbjct: 186 DDLGKGGHELSLTTGNAGGRLACGVIGL 213

[Close]

BLAST of Carg23423 vs. TAIR 10
Match: AT5G18100.1 (copper/zinc superoxide dismutase 3 )

HSP 1 Score: 187.2 bits (474), Expect = 9.8e-48
Identity = 87/150 (58.00%), Postives = 113/150 (75.33%), Query Frame = 0


Query: 2   VKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTGP 61
           ++AVA++  +  V+G + F Q+ +G T V G ISGL+PG HGFH+H+ GDTTNGC STGP
Sbjct: 8   LRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67

Query: 62  HFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHAD 121
           HFNP  + HG P++E RH GDLGN++AG +G A   I DK I L G  S+LGR++VVHAD
Sbjct: 68  HFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHAD 127

Query: 122 PDDLGRGQTELSLTTGNAGERIACGVIGLQ 152
           PDDLG+G  +LS +TGNAG R+ CG+IGLQ
Sbjct: 128 PDDLGKGGHKLSKSTGNAGSRVGCGIIGLQ 157

[Close]

BLAST of Carg23423 vs. TAIR 10
Match: AT5G18100.2 (copper/zinc superoxide dismutase 3 )

HSP 1 Score: 157.1 bits (396), Expect = 1.1e-38
Identity = 73/127 (57.48%), Postives = 95/127 (74.80%), Query Frame = 0


Query: 2   VKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTGP 61
           ++AVA++  +  V+G + F Q+ +G T V G ISGL+PG HGFH+H+ GDTTNGC STGP
Sbjct: 8   LRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67

Query: 62  HFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHAD 121
           HFNP  + HG P++E RH GDLGN++AG +G A   I DK I L G  S+LGR++VVHAD
Sbjct: 68  HFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHAD 127

Query: 122 PDDLGRG 129
           PDDLG+G
Sbjct: 128 PDDLGKG 134

The following BLAST results are available for this feature:

BLAST of Carg23423 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030279.1	6.3e-81	100.00	Superoxide dismutase [Cu-Zn] 1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022999148.1	3.1e-80	99.34	superoxide dismutase [Cu-Zn] 1-like isoform X2 [Cucurbita maxima]	[more]
XP_022946180.1	5.4e-80	99.34	superoxide dismutase [Cu-Zn]-like isoform X2 [Cucurbita moschata]	[more]
XP_022999146.1	1.7e-78	96.79	superoxide dismutase [Cu-Zn] 1-like isoform X1 [Cucurbita maxima] >XP_022999147....	[more]
XP_022946178.1	2.9e-78	96.79	superoxide dismutase [Cu-Zn] 1-like isoform X1 [Cucurbita moschata] >XP_02294617...	[more]

BLAST of Carg23423 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93258	8.6e-65	76.82	Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum OX=3544 GN=SODCC...	[more]
Q07796	7.3e-64	74.17	Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas OX=4120 GN=SODCC PE=2 SV=2	[more]
Q42611	1.2e-63	74.83	Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea OX=3707 GN=SODCC1 PE=2 SV=3	[more]
P09678	1.2e-63	74.17	Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata OX=3716 GN=SODCC...	[more]
C0HK70	1.6e-63	74.17	Superoxide dismutase [Cu-Zn] OS=Zingiber officinale OX=94328 PE=1 SV=1	[more]

BLAST of Carg23423 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KIS8	1.5e-80	99.34	Superoxide dismutase [Cu-Zn] OS=Cucurbita maxima OX=3661 GN=LOC111493618 PE=3 SV...	[more]
A0A6J1G334	2.6e-80	99.34	Superoxide dismutase [Cu-Zn] OS=Cucurbita moschata OX=3662 GN=LOC111450340 PE=3 ...	[more]
A0A6J1KC95	8.3e-79	96.79	Superoxide dismutase OS=Cucurbita maxima OX=3661 GN=LOC111493618 PE=3 SV=1	[more]
A0A6J1G326	1.4e-78	96.79	Superoxide dismutase OS=Cucurbita moschata OX=3662 GN=LOC111450340 PE=3 SV=1	[more]
A0A0A0LIH2	4.7e-74	91.45	Superoxide dismutase [Cu-Zn] OS=Cucumis sativus OX=3659 GN=Csa_2G013250 PE=3 SV=...	[more]

BLAST of Carg23423 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08830.1	7.5e-64	73.51	copper/zinc superoxide dismutase 1	[more]
AT1G08830.2	7.5e-64	73.51	copper/zinc superoxide dismutase 1	[more]
AT2G28190.1	2.8e-50	64.86	copper/zinc superoxide dismutase 2	[more]
AT5G18100.1	9.8e-48	58.00	copper/zinc superoxide dismutase 3	[more]
AT5G18100.2	1.1e-38	57.48	copper/zinc superoxide dismutase 3	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001424	Superoxide dismutase, copper/zinc binding domain	PRINTS	PR00068	CUZNDISMTASE	coord: 123..149 score: 68.5 coord: 98..120 score: 57.24 coord: 79..88 score: 70.93 coord: 43..65 score: 78.93
IPR001424	Superoxide dismutase, copper/zinc binding domain	PFAM	PF00080	Sod_Cu	coord: 11..148 e-value: 8.2E-51 score: 171.8
IPR001424	Superoxide dismutase, copper/zinc binding domain	CDD	cd00305	Cu-Zn_Superoxide_Dismutase	coord: 2..145 e-value: 3.05385E-61 score: 183.616
IPR036423	Superoxide dismutase-like, copper/zinc binding domain superfamily	GENE3D	2.60.40.200	Superoxide dismutase, copper/zinc binding domain	coord: 1..152 e-value: 5.4E-68 score: 230.0
IPR036423	Superoxide dismutase-like, copper/zinc binding domain superfamily	SUPERFAMILY	49329	Cu,Zn superoxide dismutase-like	coord: 2..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..77
None	No IPR available	PANTHER	PTHR10003:SF84	SUPEROXIDE DISMUTASE [CU-ZN]	coord: 1..152
IPR024134	Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone	PANTHER	PTHR10003	SUPEROXIDE DISMUTASE CU-ZN -RELATED	coord: 1..152
IPR018152	Superoxide dismutase, copper/zinc, binding site	PROSITE	PS00332	SOD_CU_ZN_2	coord: 137..148
IPR018152	Superoxide dismutase, copper/zinc, binding site	PROSITE	PS00087	SOD_CU_ZN_1	coord: 43..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23423-RA	Carg23423-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019430	removal of superoxide radicals
biological_process	GO:0006801	superoxide metabolic process
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0004784	superoxide dismutase activity
molecular_function	GO:0046872	metal ion binding