Carg23399 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg23399
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr06: 3202763 .. 3208845 (-)
RNA-Seq ExpressionCarg23399
SyntenyCarg23399
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCAAAAGACTCCGGGAACAGACGGCCGATCCCGCCTTCTGCAATCTCCTTATCCAATTGTTAGGTTTTTTCAGCGCGAAGGTCTAATGGCTTCGACGAGGTTTCCCTGTGCTCAAACCCTATCGAAAACCTCGAATTCTCTTCTCCGATCTTATCTTTTAGCCCTAATGGCGTCGAATTCGCTTCCAACTTCTCGTTTAGGTTATCGTTTTACTCGCAACTGCTCCTCCAGCACCGCTCCAGTTCGCACTTTGGATTATGAGGTACTTCTTAGATGGTTTGTGTTTTGTGTGTTGCAAAACTTAGGACTGATCTGATATTTCAGGATTTTTTTAATGGAAGTGTCTATTGGAAGACATTTTCGCATTTTCGCATTGCCTTTCTAACATCTGAACTGACTATTGTTAGGATTTATGACTCAAAGAGAAATTTGATTCTTGTTTACAATTTTTATCTTTAGTTATGATGTATTTGATTGACATACGTCGAGGAACTAGAGATTAGAGAGCCAAAGTTTTGTTTGCAGATTTGTCGTTGAGGGTGTAATGAATATTTGTGCGTTGTATGATGTGTCGTCTTTGTGAGATACGTAAATTGTTTATTGGCGATGAACAATCTACTTGCATCAATTTAATGCAGATAATCTTTGGAACAAACTGGTTTGTTTATCTTGTAATTCCATTTCTTCTTCCCTTTTTCAAATTTGATAACCGTTGGTTGATCGTATATTTCATTATAATTCTATGATTCAGAGTATCATTTCCTATTTGATCTCTTTGAATTTCATATTCGAAGTTGTGATCGGATCTATTCACTAAAAGAATCGATTCAATACCTTTCTTATGTACCCATAGGTGTTATATTGGATTTGAATAAGATTTTGGATCCATCCATATTGATTGACTGCCTCCATTATCTTGTTGCTAGCGTCATGACCACCTAGATTAGCTTAAGAAATGGAAGGAAAAACTATAGTTGTTGTTTTGGGAGCATGTGTAGTTGGAATTGCTTTTTATTTCGCTCACCAGTCTTTTACCCCCCTACTTACTGGATGAAGTTTCATGTAGTTCACCAATGGTTCTTCTGAAGTGGAACTGAATAACACCTTGGGAGACAAGAAATTGGTAGTTCAAAAGATGTTTTGGTGGATGCAAATCACGCCTCGTTGATAATTAAAGTACAATGGTTGGGATTCAGCAATCACTTTTCTGGAAACGAAACAACAATTTGAGAAAATAAAACCTGCAGAAACAATATGGTTTTCCATTGTTATGGTAGATAGCCTCCTACAAATAGTATGAGTCTTAATGTCTAAATATGACATTTCTATGATGAACAGGTATATTCATGAAGATCAAGTAGTTATAAATTCAAAGAAGCATGATCCAGGCTTGAAACGGCCCAACATTTTAGAGTCTTGGTAATCCCTTATAGGAGGATCTACGCAGCTTCCAAAATGAACATCGATGAATTTGATAGGGGATTCAACAGATAATAACCAAAAAGTTGGGCAGGAACTCGAAGTTGAGCTAGGGTATGGCGTCTATTTTCTCTACTTTTTGATCATTTTCATTATCCAATGTTCAATGTTGATAGTGATCGTCACGTCAATTGCTAGTTTCTTTGAAATCACGGATTCTCTCCCTTTTCAGTCAATGTCTATCAACTGAATTGTGGCCTTGAAACGTAACAACTTAAACAAGGCAAACATTTTAGTGCCAGGTAGGACCTACTTCATGTTATCTTAAGCAAGATAAACATGAACTTTCATTTTTCAATTATTAACTTCAAAAACTACGAGAAATTTATGTCCTTCTGAAATTGTTCCTACTAATTTCGTAAAACTTGCTTCTGAGAAATTTTTACTGGTATGATTCTCAGGTATACTCCATCGAGTACAAAAGAATTGCTGGAAACATTTTCCAAGCAGATCGTTGATTCATGTGAGTACTATTTACCCTGAACATGCTTTAATGCCACTAATCACTGCCAGGGTCTTATAAAGTTTTTCCCTTTTCACAATAATCACCTTCCAGAGTTTTTCTTGGCAGGTAACTGCTTCCCTTTGACTACTAACAATTTGATAATTTGGTTTTTATTGATTCTGAGGTCAGAATGTTATATACCTGTTTCTATGTTTTTCATCTTTTGAAAAGATGTTATGTATCTGCTTCTATGTTTTACTATTACATAAAGATCCCCACTTTTGGTAATAGAAAATAGAGGGTAATCACAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGGAATTAAGAGTCCAAAAGGAAGCGTTAAATGTTCCACTCTTATAACTTCTCTTTGAAATGAGGACTCAACTATTTCCTCCATCTCTGTTAAATAAGAGAGAAACCAAAACTCTACCCCAGAAATCTGTGAGGGTCCCGATTGTAAATGTTTATTTTAGGAGGGGCAAGAACGGAAATACATTATCCCCTTAGAACAGATATGTGTTAAACACTAGGGGACAAATATACGTCCTATATTTGTTAGACACGCATGTGCTTATTGAGTAGGGCAATTTAGTCTAAAAATAAATGATTATTATGACAAAAATAATAATGAAAGTGAAATACATCAAACTCATTTTTTAAGCGTATAAATGCATAAGCTTATTGATTTTAAATTTCCTTTTGGTATTAAAGTGATGTATACTATATAAAATATAAATTTTAATAAACATGTCCTTGTTGTGTCGGAGTTCTAGTTTTTTCTTTTTTTATAATAAAATGATAAGTCATCATGTTGTGACTCATATCTATATCCATACTTCTTAGGTTCTTATAATCCTCCCAAAATTGTGCTCTACTACCATCCCCCATAAAGAAAAGGTAATGAAAGGGAGGAAACTTGGGAGACCGGGGGAAATATAACCTTCCAAGGATTTTTGAAGGTGCCCTTAGATAGTGCCTTCAATTATTGAGATGAAGCTCACACATGCACATAATTGTCAAAGCAACAAAGCTCGTGGTTCTAACAACCACTTTAGGGAGGCTACATTCTTGTTGTTTAAATTTCCCATTCTCAACCCCCTTACTCACTAGTTCCAATACATCATTCCAATTCTCTTGGTATGATATGACCCACCCTCATCCTCGACATTTTCTGATAAGAAATCTCTCGTCTTTTATTAAGTGTCACAATCTCACTAAGAAGACAAGTAGGTTGTGAGACCCCACACGCAAACTAACAAGGTGGTGACCCTCAAGTGGCGCCCATCCGGCCACGTGAGGGCCGAGACAGATAAGTTCCATGATGTAACCGAGGAGGATGGTGCATCATCCAACACACCAAGAAGAGTGTGTATTAAAGCCAAGTTGAGTTATAAGCAAGGTCAAAGATAATGAGGCAACACGAGTGTCGAAGACAAGCTCGAAGAGGGCCGAGTAGGGCACTAGGCCATAACCTTAGAAGTCGGGGTTTCGATATGAGCTTCGGCATGCAGCTCTTAAGTTAATTCTGTCTATATGAAAGATGAAAGCTCACCAAATTTGGTGATGATTAGACACCCGACAAACGCTCCACGAGATTGTATGGTCGCTCGCCAAAATCACGTTTACTCCAGAAAGATTAAAAATGCCTCAAAATGTACTATAGGGGGAGACATGGTGTTTGCTATCTGTCATCCCTAGGCTTTGTGGCCTAAGCAAGCTACCTTGTGGCACATACGACGTGTATCACGATGTGGGTGAGCGTCTTCCTTTAAAATGGGTCTTTCAAGGATAGTGTTGGACGGCACAGGTATGCTAACATTGCACCCTAGTCCATGTGTCGAAGGTTGGTATATACACCCGCTATTTGGTATGGAGTCCATAAATGACATGGCATGAACACAAGAGGGTTTTATGTCTCGACGAGAACCCGGATGGATGGATGTTCAGGATGTTCTCATGAGATGAGCGACATATAGGTCGATTCCAATAGACGTGTCTGAGTAAGCCAAAATGGATGAGTTGTCCCAAGACATGGAATGACATCACGATGCATGAGTCGTGGTGTGAACCAAGATGATGACTAAGATATGACGTTACACATGAGAGACCTTGGCCTAGTGCAGAGGTAAGTTGACTAGAGTCACAAACGACACGAGCGACGTGTGTGACCAAACAAGCATGTATTTTGCACAAGTTGTGTCCGATTGCCGAAGGTAAACCTCGCCTAAGATCTGACAAAACCACAAAGACAGACGAAAAACGTGAATGGGGTTTGAGTTTTCCTTTAGGCTTGTCATGAGCTTGTCATGAGCTTGTCAAGGTCATAACATCGCACGGTTAAAAAGGTATGATCGTGACATAAGCACACCACACTAAGGTCGGTAAAAAGAATTCCTCCCAGACCTTAACCCTTCTCCACCATTGGTTCTCAATGTTAGGAATATGGAGCCAATACCATGCTGCAAAGCTTGGAGGATCAAAATCACTGCATCCACATTTGTTGAAGTCTCGTGGAGGGTTTCTTTTGTTGTTATCCTAATTCGATTGTGGTACTTGGAAGTCAAATAATTTTTGTTGGGTTATTTGAAGGTCGATTAGCAGCACGAGTTTGAGACCTTTTGTAACCTTCATTACAATAGAATCTGCCGGCAAACCAGTATACTTATCAGTGTTCTCGTTTTTCCTCTCTTTTATTTGTCATTTGTGACTTACTAACTTATTTGGCTCACACTTGTGAAGGGTTTGAATAATTGAAGTATATTTTAGTTTTGTCTTAATTCTCTTTGTATCCATTTCTCCCAGCACCCAACTAGATTTGACTTGAGGATAATGGGAGTGGGAAACTCAAATAAGACAAGGAAAGAGAAACAAAGAACCTTGCACCTAGAAATAATTGTTCACCTTCTTAGTTTGTCTACATTGCAAATGATCTTGAATAAAGGACACTCATCTCTTAAATTGGATGCTGAACCTTTTAAGATCAATGCCGGTAGTTTGAATATGACTTTCATATTTTGGTTGAAAGTATATGTTATTCATTCATTTGCTGAACATTTGCTCAAAAAAATTTCAGATGTTAATCAAATATCAGTCTTTCATTGCTTGAACTAAAAAAAGACAGCGTCAATAGCAAATTGTAAAGGAGATATGGGCATTGTTCTGGCCAACCATCCCCTCGTTGCAAATTGACATAGAACATCTGCTGCATTTATGTATAAAAAGAAATTCCCCTTGGTTTGCCATTAATTAAAATATAAAAATGGGTTAATTGCAAGTGGTTTCAACATTCTCTGTTTGAAACCGTTGCTCTTTTTCCGATATTATATTGTCCAAAATGCCTAACTCTGTGATCATAAGCCTTCTCAAAATTTATGTTTAAAATGATACTTTCGAATTGTTATTTATTAAAATATTATTTTGAGCGTGCTTTCTCCTAACAAAGTCTTCTTGTTTCAGTGAAATCAAGACAAATTCTCACTAGGCATGGAAAAGAAGGTAGGCTCTCGCTTTCTTTTGCCACTCAAGTGTATATACGACATAAGCCGTTAAAAGTTAACCAGTGGGAAGCTTAGAGCCTCTCTTCCTTCAATAGGTACTCCCAACCCATCAACCATTCGGAATCTGTCTTCTACAAAGAAAAAAGCCGGTTACGAGTAAGTGAGAAGGTTTTTAGAACTTTTTACCGAGCCCAAGCTCAATAAAACTCTAAATGTGCATAGTGCCCATGGGGTGATTTTATATAAGAGAGTGGCAAGACTAATTGACTTCAAATCCTTGATTCCATTTGCTCTAGTCATTTTCTGGTAAGAGGCAAGTGAAAGTCTCATCCATTGCAGTGTGCACCGTATCTGCATATTGAACACTCAAATCATCTCTTCTTTCTTTGTAAAGGAAAATCAAATCCCAACAGCATCGAAAGAACGCAACAATTAAGAATTTATAGTTAGGAGCCTTGCGTCCATTGCAATTATAAGCAATGCATTTCTTTTATGTCTTCAGGAGGATAGTGCTGTTCGAAATACTCCTGCTCTTCCTGACCATAAACAGTGTCTATCATTTAATAAAATCCTTAAACTCTCTACCCTACAAACTAATACTCATCAGCTTCTTCGTTTCATTTTAAACATGTTTTC

mRNA sequence

TTCAAAAGACTCCGGGAACAGACGGCCGATCCCGCCTTCTGCAATCTCCTTATCCAATTGTTAGGTTTTTTCAGCGCGAAGGTCTAATGGCTTCGACGAGGTTTCCCTGTGCTCAAACCCTATCGAAAACCTCGAATTCTCTTCTCCGATCTTATCTTTTAGCCCTAATGGCGTCGAATTCGCTTCCAACTTCTCGTTTAGGTTATCGTTTTACTCGCAACTGCTCCTCCAGCACCGCTCCAGTTCGCACTTTGGATTATGAGGTATACTCCATCGAGTACAAAAGAATTGCTGGAAACATTTTCCAAGCAGATCGTTGATTCATTGAAATCAAGACAAATTCTCACTAGGCATGGAAAAGAAGGTACTCCCAACCCATCAACCATTCGGAATCTGTCTTCTACAAAGAAAAAAGCCGGTTACGAGTAAGTGAGAAGGTTTTTAGAACTTTTTACCGAGCCCAAGCTCAATAAAACTCTAAATGTGCATAGTGCCCATGGGGTGATTTTATATAAGAGAGTGGCAAGACTAATTGACTTCAAATCCTTGATTCCATTTGCTCTAGTCATTTTCTGGTAAGAGGCAAGTGAAAGTCTCATCCATTGCAGTGTGCACCGTATCTGCATATTGAACACTCAAATCATCTCTTCTTTCTTTGTAAAGGAAAATCAAATCCCAACAGCATCGAAAGAACGCAACAATTAAGAATTTATAGTTAGGAGCCTTGCGTCCATTGCAATTATAAGCAATGCATTTCTTTTATGTCTTCAGGAGGATAGTGCTGTTCGAAATACTCCTGCTCTTCCTGACCATAAACAGTGTCTATCATTTAATAAAATCCTTAAACTCTCTACCCTACAAACTAATACTCATCAGCTTCTTCGTTTCATTTTAAACATGTTTTC

Coding sequence (CDS)

ATGGCTTCGACGAGGTTTCCCTGTGCTCAAACCCTATCGAAAACCTCGAATTCTCTTCTCCGATCTTATCTTTTAGCCCTAATGGCGTCGAATTCGCTTCCAACTTCTCGTTTAGGTTATCGTTTTACTCGCAACTGCTCCTCCAGCACCGCTCCAGTTCGCACTTTGGATTATGAGGTATACTCCATCGAGTACAAAAGAATTGCTGGAAACATTTTCCAAGCAGATCGTTGA

Protein sequence

MASTRFPCAQTLSKTSNSLLRSYLLALMASNSLPTSRLGYRFTRNCSSSTAPVRTLDYEVYSIEYKRIAGNIFQADR
Homology
[Close]
BLAST of Carg23399 vs. NCBI nr
Match: KAG7028255.1 (hypothetical protein SDJN02_09436 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 150.2 bits (378), Expect = 7.2e-33
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MASTRFPCAQTLSKTSNSLLRSYLLALMASNSLPTSRLGYRFTRNCSSSTAPVRTLDYEV 60
          MASTRFPCAQTLSKTSNSLLRSYLLALMASNSLPTSRLGYRFTRNCSSSTAPVRTLDYEV
Sbjct: 1  MASTRFPCAQTLSKTSNSLLRSYLLALMASNSLPTSRLGYRFTRNCSSSTAPVRTLDYEV 60

Query: 61 YSIEYKRIAGNIFQADR 78
          YSIEYKRIAGNIFQADR
Sbjct: 61 YSIEYKRIAGNIFQADR 77

[Close]
BLAST of Carg23399 vs. NCBI nr
Match: KAG6596718.1 (hypothetical protein SDJN03_09898, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.4 bits (285), Expect = 4.4e-22
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MASTRFPCAQTLSKTSNSLLRSYLLALMASNSLPTSRLGYRFTRNCSSSTAPVRTLDYE 60
          MASTRFPCAQTLSKTSNSLLRSYLLALMASNSLPTSRLGYRFTRNCSSSTAPVRTLDYE
Sbjct: 1  MASTRFPCAQTLSKTSNSLLRSYLLALMASNSLPTSRLGYRFTRNCSSSTAPVRTLDYE 59

The following BLAST results are available for this feature:
BLAST of Carg23399 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7028255.17.2e-33100.00hypothetical protein SDJN02_09436 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6596718.14.4e-22100.00hypothetical protein SDJN03_09898, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg23399 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg23399 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg23399 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg23399-RACarg23399-RAmRNA