Carg23395 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg23395
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	binding partner of ACD11 1-like isoform X2
Location	Carg_Chr06: 3248566 .. 3252107 (-)
RNA-Seq Expression	Carg23395
Synteny	Carg23395

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTGTGTAGCGATTTTTCTTTCATCTGAGGCGACGAAGACTTGGGGCGCGCACTGTGAGAAAATCCCAAATTCAGAATCAAATTTTTCGGTTCAATTCGTATTGGATTCCGGGTTCCCGGATATCGTCGGTTGATTCTGTCTCCGTTCCGGCGGTGTTATCTTAGTCATTTCCAGCGATGTCGGTTAGTACTTCGTGAATTTTCCTCTCTTTTCGTTGTGTTTGAAGATTGGGATTGGGATTGGGATTGGGAGTTGGAAATGGTTAGGGCAAGATTTCGTTGGTTTAGGTTTGGAGCCGTAGTTTGTAGTTTCTCATCGGGGTTATAACGAATCAGTGCAATGTGCGGCGAGGGAATTAGATCTCTTGTGGTTTACTTTTCCGTTTGACTTTCTCATTTGGAGGTTTTGTGTTTGGTTGAGATTTTCCCAATCGGTGAGTCAAGAATCGAGACTAATGTTTAAGCAAATCGGTCCATTTCTATGTTCTGATTGATTATGAGTTCGTGCCATATCTGTTCCTCCTACTGAATCTGGAGCTGCAAAAGAAGCATGAATCCGAAATTAATGATTCTTGTAATTAATACTTTGCGCCTTTAGATCATAATTTCTGGTTGGCTTGTTGATATCCATCCTTTTATTCGCTGCACCATTGAGATTTTCATCTATTTTTTCTGGCCATAGTTGATTTTTTACTCTCTTTCTGCCTTCTGGTTATCACGATTCAGTAGTAGAAATGAATTTGTGCATCATACTGGAGATAGTGAGAGACTCCTTGATCTGTATTTTGCATATAAATGCAACTGTTTTGTTCTGTATGCAGGTTAGGACTGTTAAAGTCAGCAATGTCTCCTTGGGAGCATCTGAACGAGATATCATGGAGTTTTTTTCCTTTTCTGGTGACATTGAATATCTGGAAATGCAGAGGTTTGTGTACGATTTTTAATTCCAGTTTATGATATATATTCAGTTCATTCAATTTATGCAAACACCAAGTGTTCTTGTGCAGTGAAAGTGAACGGTCTCAAATTGCTTATGTGACTTTTAAGGATGTTCAAGGTGCTGAGACTGCTGTTCTTCTGTCTGTAAGTTCACTTTGTAGACAATATCTATAGTTAAATAGTAATTATAAAAGTCTTATACCCCATTGGCATTTAAGATATAACTCTCGTCGATTCGATTAATAGTGGAACTATTTGTCAATGTTGAAGTATGGTTGGCAATATGATCGTTAAATGTTGAAAATGGTGGTGTTCTTGGGTGTTATTAGTGTCTGAGCCTTGTCTAGGGAGAGGATGATGCTTTAACCTTCGACCTTATAATAGGAAGAGACTAGTAAGGGCCTTTACATCTCTTCTTCTACTCTCTTTATCTTTGCCTACACCTTACATCCGACCTACCTTCGTAAATCTGCAACGGTTCCCACCTATAAATGAATTATAAGAGGCTAGCCTCCATATTAGGTGGATCATGTTGCCATTTCATGATATATGATCTGAGGGAGCGTTTGCCCCTTAACGAGTTAAATGGTGTAAGGGACATAACGCTGATGCTAACAGCTGGAGATCAAATTTTGGCTTGGTTGCTCTTCTGTTGTTGAGAGTTTAAGGTAGATCTTAGCTGGAAGTTTGTTCTATGTGTATTAAAATTTCCCCTTATCCTTTTCCTTGAGATATATTGTCTTGATTTTTTTGTTCAGTACATTTTAAACTTGTTATAATGAATTGACTAATGACACCCTGCCATAAGAATTGCCTGAGCTTCTTAGATTAATGGGTTCAACTTCTTGTCAGGGAGCAACTATAGTGGATCTTTCTGTCAACATCACTCTGTGTCCTGAATATGAGCTCCCTCCAGAAGCTACCGCGGCACCACCTGTAAGATTCTTGGGAGCGTTGTTCCTTTTTTGGGCTGCTGTGTGTAAGCCTGTTTGTCACTTCATGTGTTCTCTTAGTTGACCAGTTTATTGTCTTGATTGTTGTAGGCCCCAGGAGCTAAAGAACCTGGTGCTGCTGAATCCGCCTTTCGGAAAGCCGAGGATGTGGTTAGCGGCATGCTTGCCAAGGGCTTTATATTGGGTAAAGATGCAGTCAACTCCGCAAAGGCATTTGATGAGAAACATCAATTATCTTCCACGGCCTCAGCCAAAGTTGCTACATTTGATAAGAAAATTGGGTTCACTGAGAAAATTAGTGCTGGTACATCGTTGGTGAGCGACAAAGTTCGGGAAGTCGACCAGAAGTTTCAGGTTTCAGAGAAGACTAAATCAGCATTTGCAGTTGCAGAGGAAAAAGTTAGCACTGCTGGGTCTGCCATTATGAAAAACCGATACATATTGACCGGGACTAGCTGGGTTACTGGCGCTTTCAGTAAGGTAGCCAAGGCAGCTGGAGAGGTTGGTCAGAAAACAAAAGAGAAAGTCGAGGAGACGGAAGAAGAACAGAGAAAGAAGATGGTCGAAGATTTTGCTCAGGTTCATCTCTCGGAATCCCCTAAAGGAGGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGCAGCAGCATCTGCACCCCCTGAGCCTCAACAACGCCCCAAGCCCGAACCCGCTCAAGGTCTGATTCTCTGAATTGTTGTCATGTTTGTTGATATCTATGTCTGAAAGTTCATGTAGTTGTAATGTGTACTTCCCCTTCACTTCTGGCATATGATGGTGGTTATATTTTAGGGTGAAAAAATATAGAATAGATTTGTTGCTCTCAATTAGTAGTCGGACTTCGATTGCTTAAGATATCTTCATTTGACAGGATGATTTAAAAACAGCAGATTTTTCCATATTGAAAAACAAATTCTGCTCTTTCTATCATTGCTATCTATGTATCAGTGCTGTTCTGGGCTAGTTTTTGGAGTTCCAGAGATTTATTTGTGTTATGTGCTTCCAATTTTCTTTTACAAAACTTTGTTCTTCTTGTCTTGGGAGTGTATGCTGCTTTTCTTAATTTTTTAAAATATCGTTTAATTGAGATTTTCAAAATTTTGTATACTTCTTTTGAGAAGAATCCTTTCTATGATTATACTTGACTGTGTCGTTAGAAATACATCAGAAGAATATGACATGATGGGTCAATGAAGCATGTCCAAAAAGAAACAACCTTAGGCTCAAATTTCTGATAACTACCATAGGATAACGATGTCGAAGTACCTAAGAGGAGGATCACATGATGGGTCAACGAAGCATGCCTAAAAGTAAACTAACCCACGGACTCGAACAATTCGCAGACTCGAACTACTAATATTGGTAAACCAACGTCTCTTAGCATACTCGAACTATTGACATTGGTAAATCAACGTCTCTTAGTCCCAGATTGATTCTAACATGTCACGTCTCTTAGCCCCAGATTGCTTCTACCATGTCACTTTTCGTTGAGGCTAAGGATTCTACAAGATTATAAGACATCATGAAAATTGAAGCATCACAATTGAGTGCTTAGATTTGCTCGGATTTGGCAAATAAATCTAGTTTTTTTTTTTTTGTTTTTATAATTTATTAGAACGAAATCTATTCACGTGA

mRNA sequence

CGTGTGTAGCGATTTTTCTTTCATCTGAGGCGACGAAGACTTGGGGCGCGCACTGTGAGAAAATCCCAAATTCAGAATCAAATTTTTCGGTTCAATTCGTATTGGATTCCGGGTTCCCGGATATCGTCGGTTGATTCTGTCTCCGTTCCGGCGGTGTTATCTTAGTCATTTCCAGCGATGTCGGTTAGGACTGTTAAAGTCAGCAATGTCTCCTTGGGAGCATCTGAACGAGATATCATGGAGTTTTTTTCCTTTTCTGGTGACATTGAATATCTGGAAATGCAGAGTGAAAGTGAACGGTCTCAAATTGCTTATGTGACTTTTAAGGATGTTCAAGGTGCTGAGACTGCTGTTCTTCTGTCTGGAGCAACTATAGTGGATCTTTCTGTCAACATCACTCTGTGTCCTGAATATGAGCTCCCTCCAGAAGCTACCGCGGCACCACCTGCCCCAGGAGCTAAAGAACCTGGTGCTGCTGAATCCGCCTTTCGGAAAGCCGAGGATGTGGTTAGCGGCATGCTTGCCAAGGGCTTTATATTGGGTAAAGATGCAGTCAACTCCGCAAAGGCATTTGATGAGAAACATCAATTATCTTCCACGGCCTCAGCCAAAGTTGCTACATTTGATAAGAAAATTGGGTTCACTGAGAAAATTAGTGCTGGTACATCGTTGGTGAGCGACAAAGTTCGGGAAGTCGACCAGAAGTTTCAGGTTTCAGAGAAGACTAAATCAGCATTTGCAGTTGCAGAGGAAAAAGTTAGCACTGCTGGGTCTGCCATTATGAAAAACCGATACATATTGACCGGGACTAGCTGGGTTACTGGCGCTTTCAGTAAGGTAGCCAAGGCAGCTGGAGAGGTTGGTCAGAAAACAAAAGAGAAAGTCGAGGAGACGGAAGAAGAACAGAGAAAGAAGATGGTCGAAGATTTTGCTCAGGTTCATCTCTCGGAATCCCCTAAAGGAGGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGCAGCAGCATCTGCACCCCCTGAGCCTCAACAACGCCCCAAGCCCGAACCCGCTCAAGAACGAAATCTATTCACGTGA

Coding sequence (CDS)

ATGTCGGTTAGGACTGTTAAAGTCAGCAATGTCTCCTTGGGAGCATCTGAACGAGATATCATGGAGTTTTTTTCCTTTTCTGGTGACATTGAATATCTGGAAATGCAGAGTGAAAGTGAACGGTCTCAAATTGCTTATGTGACTTTTAAGGATGTTCAAGGTGCTGAGACTGCTGTTCTTCTGTCTGGAGCAACTATAGTGGATCTTTCTGTCAACATCACTCTGTGTCCTGAATATGAGCTCCCTCCAGAAGCTACCGCGGCACCACCTGCCCCAGGAGCTAAAGAACCTGGTGCTGCTGAATCCGCCTTTCGGAAAGCCGAGGATGTGGTTAGCGGCATGCTTGCCAAGGGCTTTATATTGGGTAAAGATGCAGTCAACTCCGCAAAGGCATTTGATGAGAAACATCAATTATCTTCCACGGCCTCAGCCAAAGTTGCTACATTTGATAAGAAAATTGGGTTCACTGAGAAAATTAGTGCTGGTACATCGTTGGTGAGCGACAAAGTTCGGGAAGTCGACCAGAAGTTTCAGGTTTCAGAGAAGACTAAATCAGCATTTGCAGTTGCAGAGGAAAAAGTTAGCACTGCTGGGTCTGCCATTATGAAAAACCGATACATATTGACCGGGACTAGCTGGGTTACTGGCGCTTTCAGTAAGGTAGCCAAGGCAGCTGGAGAGGTTGGTCAGAAAACAAAAGAGAAAGTCGAGGAGACGGAAGAAGAACAGAGAAAGAAGATGGTCGAAGATTTTGCTCAGGTTCATCTCTCGGAATCCCCTAAAGGAGGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGCAGCAGCATCTGCACCCCCTGAGCCTCAACAACGCCCCAAGCCCGAACCCGCTCAAGAACGAAATCTATTCACGTGA

Protein sequence

MSVRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVLLSGATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFILGKDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVSEKTKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETEEEQRKKMVEDFAQVHLSESPKGGGGGGAAAAAAAASAPPEPQQRPKPEPAQERNLFT

Homology

[Close]

BLAST of Carg23395 vs. NCBI nr
Match: KAG7028259.1 (Binding partner of ACD11 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 541.6 bits (1394), Expect = 4.3e-150
Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 0


Query: 1   MSVRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVL 60
           MSVRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVL
Sbjct: 1   MSVRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFI 120
           LSGATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFI
Sbjct: 61  LSGATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180
           LGKDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS
Sbjct: 121 LGKDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETE 240
           EKTKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETE
Sbjct: 181 EKTKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETE 240

Query: 241 EEQRKKMVEDFAQVHLSESPKGGGGGGAAAAAAAASAPPEPQQRPKPEPAQERNLFT 298
           EEQRKKMVEDFAQVHLSESPKGGGGGGAAAAAAAASAPPEPQQRPKPEPAQERNLFT
Sbjct: 241 EEQRKKMVEDFAQVHLSESPKGGGGGGAAAAAAAASAPPEPQQRPKPEPAQERNLFT 297

[Close]

BLAST of Carg23395 vs. NCBI nr
Match: KAG6596723.1 (Binding partner of ACD11 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 523.9 bits (1348), Expect = 9.3e-145
Identity = 291/292 (99.66%), Postives = 291/292 (99.66%), Query Frame = 0


Query: 1   MSVRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVL 60
           MSVRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVL
Sbjct: 44  MSVRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVL 103

Query: 61  LSGATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFI 120
           LSGATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFI
Sbjct: 104 LSGATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFI 163

Query: 121 LGKDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180
           LGKDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS
Sbjct: 164 LGKDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 223

Query: 181 EKTKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETE 240
           EKTKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETE
Sbjct: 224 EKTKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETE 283

Query: 241 EEQRKKMVEDFAQVHLSESPKGGGGGGAAAAAAAASAPPEPQQRPKPEPAQE 293
           EEQRKKMVEDFAQVHLSESPK GGGGGAAAAAAAASAPPEPQQRPKPEPAQE
Sbjct: 284 EEQRKKMVEDFAQVHLSESPK-GGGGGAAAAAAAASAPPEPQQRPKPEPAQE 334

[Close]

BLAST of Carg23395 vs. NCBI nr
Match: XP_022924148.1 (binding partner of ACD11 1-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 518.1 bits (1333), Expect = 5.1e-143
Identity = 287/291 (98.63%), Postives = 288/291 (98.97%), Query Frame = 0


Query: 1   MSVRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVL 60
           MSVRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVL
Sbjct: 1   MSVRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFI 120
           LSGATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFI
Sbjct: 61  LSGATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180
           LGKDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS
Sbjct: 121 LGKDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETE 240
           EKTKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETE
Sbjct: 181 EKTKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETE 240

Query: 241 EEQRKKMVEDFAQVHLSESPKGGGGGGAAAAAAAASAPPEPQQRPKPEPAQ 292
           EEQRKKMVEDFA+VHLSESPKGGGGG   AAAAAASAPPEPQQRPKPEPAQ
Sbjct: 241 EEQRKKMVEDFAEVHLSESPKGGGGG---AAAAAASAPPEPQQRPKPEPAQ 288

[Close]

BLAST of Carg23395 vs. NCBI nr
Match: XP_022924007.1 (binding partner of ACD11 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 516.5 bits (1329), Expect = 1.5e-142
Identity = 286/291 (98.28%), Postives = 287/291 (98.63%), Query Frame = 0


Query: 1   MSVRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVL 60
           M VRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVL
Sbjct: 3   MQVRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVL 62

Query: 61  LSGATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFI 120
           LSGATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFI
Sbjct: 63  LSGATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFI 122

Query: 121 LGKDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180
           LGKDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS
Sbjct: 123 LGKDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 182

Query: 181 EKTKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETE 240
           EKTKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETE
Sbjct: 183 EKTKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETE 242

Query: 241 EEQRKKMVEDFAQVHLSESPKGGGGGGAAAAAAAASAPPEPQQRPKPEPAQ 292
           EEQRKKMVEDFA+VHLSESPKGGGGG   AAAAAASAPPEPQQRPKPEPAQ
Sbjct: 243 EEQRKKMVEDFAEVHLSESPKGGGGG---AAAAAASAPPEPQQRPKPEPAQ 290

[Close]

BLAST of Carg23395 vs. NCBI nr
Match: XP_022924074.1 (binding partner of ACD11 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 514.6 bits (1324), Expect = 5.6e-142
Identity = 285/289 (98.62%), Postives = 286/289 (98.96%), Query Frame = 0


Query: 3   VRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVLLS 62
           VRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVLLS
Sbjct: 4   VRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVLLS 63

Query: 63  GATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFILG 122
           GATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFILG
Sbjct: 64  GATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFILG 123

Query: 123 KDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVSEK 182
           KDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVSEK
Sbjct: 124 KDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVSEK 183

Query: 183 TKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETEEE 242
           TKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETEEE
Sbjct: 184 TKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETEEE 243

Query: 243 QRKKMVEDFAQVHLSESPKGGGGGGAAAAAAAASAPPEPQQRPKPEPAQ 292
           QRKKMVEDFA+VHLSESPKGGGGG   AAAAAASAPPEPQQRPKPEPAQ
Sbjct: 244 QRKKMVEDFAEVHLSESPKGGGGG---AAAAAASAPPEPQQRPKPEPAQ 289

[Close]

BLAST of Carg23395 vs. ExPASy Swiss-Prot
Match: Q9LFD5 (Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 2.4e-71
Identity = 158/263 (60.08%), Postives = 201/263 (76.43%), Query Frame = 0


Query: 3   VRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVLLS 62
           VR+VKV N+S GA+E DI EFFSFSG++E +++QS +E S  AYVTFK+ QGAETAVLLS
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQS-NEHS--AYVTFKETQGAETAVLLS 64

Query: 63  GATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFILG 122
           GA+I D SV I L P Y  P    AAP A    +   AES  +KAEDVVS MLAKGFILG
Sbjct: 65  GASIADQSVIIELAPNYSPP----AAPHA--ETQSSGAESVVQKAEDVVSSMLAKGFILG 124

Query: 123 KDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVSEK 182
           KDAV  AKAFDEKH  +STA+A VA+ D+KIG ++K++AGTSLV++K++ VDQ FQV+E+
Sbjct: 125 KDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQVTER 184

Query: 183 TKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETEEE 242
           TKS +A AE+ VS+AGSA+MKNRY+LTG SW  GAF++VA+AAGEVGQKTKEKVE  +  
Sbjct: 185 TKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKVEAEQPS 244

Query: 243 Q----RKKMVEDFAQVHLSESPK 262
           Q    ++++ E ++ +H SE  K
Sbjct: 245 QPAQSQQQLPEGYSPIHSSEYSK 258

[Close]

BLAST of Carg23395 vs. ExPASy Swiss-Prot
Match: P87216 (Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=vip1 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 9.7e-04
Identity = 47/183 (25.68%), Postives = 80/183 (43.72%), Query Frame = 0


Query: 6   VKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVLLSGAT 65
           V V+N+S   +E+ I +FFSF G +  +  +   E +Q A + F+     +TA+LL  A 
Sbjct: 5   VIVTNISPEVTEKQISDFFSFCGKVSNISTEKSGE-TQTAKIQFERPSATKTALLLQDAL 64

Query: 66  IVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFILGKDA 125
           +    + IT          A +     GA    AA    +    ++S +L++G+ L    
Sbjct: 65  LGQNKIQIT-----SEDGGAASTTDQGGAGGDQAARQEDKPRSAIISELLSRGYHLSDVT 124

Query: 126 VNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSL------VSDKVREVDQKFQV 183
           +  +   D+ + +SS          K  G  E   +G         V++K  EVD KF +
Sbjct: 125 LEKSIQLDQSYGVSS----------KFKGILESALSGVRSVNERYHVTEKANEVDNKFAI 171

[Close]

BLAST of Carg23395 vs. ExPASy TrEMBL
Match: A0A6J1EBK2 (binding partner of ACD11 1-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111431529 PE=4 SV=1)

HSP 1 Score: 518.1 bits (1333), Expect = 2.5e-143
Identity = 287/291 (98.63%), Postives = 288/291 (98.97%), Query Frame = 0


Query: 1   MSVRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVL 60
           MSVRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVL
Sbjct: 1   MSVRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFI 120
           LSGATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFI
Sbjct: 61  LSGATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180
           LGKDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS
Sbjct: 121 LGKDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETE 240
           EKTKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETE
Sbjct: 181 EKTKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETE 240

Query: 241 EEQRKKMVEDFAQVHLSESPKGGGGGGAAAAAAAASAPPEPQQRPKPEPAQ 292
           EEQRKKMVEDFA+VHLSESPKGGGGG   AAAAAASAPPEPQQRPKPEPAQ
Sbjct: 241 EEQRKKMVEDFAEVHLSESPKGGGGG---AAAAAASAPPEPQQRPKPEPAQ 288

[Close]

BLAST of Carg23395 vs. ExPASy TrEMBL
Match: A0A6J1E7P2 (binding partner of ACD11 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111431529 PE=4 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 7.2e-143
Identity = 286/291 (98.28%), Postives = 287/291 (98.63%), Query Frame = 0


Query: 1   MSVRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVL 60
           M VRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVL
Sbjct: 3   MQVRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVL 62

Query: 61  LSGATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFI 120
           LSGATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFI
Sbjct: 63  LSGATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFI 122

Query: 121 LGKDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180
           LGKDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS
Sbjct: 123 LGKDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 182

Query: 181 EKTKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETE 240
           EKTKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETE
Sbjct: 183 EKTKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETE 242

Query: 241 EEQRKKMVEDFAQVHLSESPKGGGGGGAAAAAAAASAPPEPQQRPKPEPAQ 292
           EEQRKKMVEDFA+VHLSESPKGGGGG   AAAAAASAPPEPQQRPKPEPAQ
Sbjct: 243 EEQRKKMVEDFAEVHLSESPKGGGGG---AAAAAASAPPEPQQRPKPEPAQ 290

[Close]

BLAST of Carg23395 vs. ExPASy TrEMBL
Match: A0A6J1E858 (binding partner of ACD11 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111431529 PE=4 SV=1)

HSP 1 Score: 514.6 bits (1324), Expect = 2.7e-142
Identity = 285/289 (98.62%), Postives = 286/289 (98.96%), Query Frame = 0


Query: 3   VRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVLLS 62
           VRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVLLS
Sbjct: 4   VRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVLLS 63

Query: 63  GATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFILG 122
           GATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFILG
Sbjct: 64  GATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFILG 123

Query: 123 KDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVSEK 182
           KDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVSEK
Sbjct: 124 KDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVSEK 183

Query: 183 TKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETEEE 242
           TKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETEEE
Sbjct: 184 TKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETEEE 243

Query: 243 QRKKMVEDFAQVHLSESPKGGGGGGAAAAAAAASAPPEPQQRPKPEPAQ 292
           QRKKMVEDFA+VHLSESPKGGGGG   AAAAAASAPPEPQQRPKPEPAQ
Sbjct: 244 QRKKMVEDFAEVHLSESPKGGGGG---AAAAAASAPPEPQQRPKPEPAQ 289

[Close]

BLAST of Carg23395 vs. ExPASy TrEMBL
Match: A0A6J1L2C1 (binding partner of ACD11 1-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111498464 PE=4 SV=1)

HSP 1 Score: 507.3 bits (1305), Expect = 4.4e-140
Identity = 282/291 (96.91%), Postives = 283/291 (97.25%), Query Frame = 0


Query: 1   MSVRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVL 60
           MSVRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVL
Sbjct: 1   MSVRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFI 120
           LSGATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFI
Sbjct: 61  LSGATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180
           LGKDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS
Sbjct: 121 LGKDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETE 240
           EKTKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEE+E
Sbjct: 181 EKTKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEESE 240

Query: 241 EEQRKKMVEDFAQVHLSESPKGGGGGGAAAAAAAASAPPEPQQRPKPEPAQ 292
           EEQRKKMVEDFAQVHLSESPKGG        AAAASAPPEPQQRPKPEPAQ
Sbjct: 241 EEQRKKMVEDFAQVHLSESPKGG--------AAAASAPPEPQQRPKPEPAQ 283

[Close]

BLAST of Carg23395 vs. ExPASy TrEMBL
Match: A0A6J1KTA3 (binding partner of ACD11 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498464 PE=4 SV=1)

HSP 1 Score: 504.2 bits (1297), Expect = 3.7e-139
Identity = 280/289 (96.89%), Postives = 281/289 (97.23%), Query Frame = 0


Query: 3   VRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVLLS 62
           VRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVLLS
Sbjct: 4   VRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVLLS 63

Query: 63  GATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFILG 122
           GATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFILG
Sbjct: 64  GATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFILG 123

Query: 123 KDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVSEK 182
           KDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVSEK
Sbjct: 124 KDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVSEK 183

Query: 183 TKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETEEE 242
           TKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEE+EEE
Sbjct: 184 TKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEESEEE 243

Query: 243 QRKKMVEDFAQVHLSESPKGGGGGGAAAAAAAASAPPEPQQRPKPEPAQ 292
           QRKKMVEDFAQVHLSESPKGG        AAAASAPPEPQQRPKPEPAQ
Sbjct: 244 QRKKMVEDFAQVHLSESPKGG--------AAAASAPPEPQQRPKPEPAQ 284

[Close]

BLAST of Carg23395 vs. TAIR 10
Match: AT4G17720.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 342.0 bits (876), Expect = 4.7e-94
Identity = 195/300 (65.00%), Postives = 239/300 (79.67%), Query Frame = 0


Query: 1   MSVRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVL 60
           M++ TVKVSNVSLGA++RD+ EFFSFSGDI YLE QSE+ER+++AYVTFKD+QGAETAVL
Sbjct: 1   MTMTTVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPEYELPPEATAA-PPAPGAKEPGAAESAFRKAEDVVSGMLAKGF 120
           LSGATIVD SV +++ P+Y+L PEA A+  P    K P A +S  RKAEDVVS MLAKGF
Sbjct: 61  LSGATIVDSSVIVSMAPDYQLSPEALASLEPKDSNKSPKAGDSVLRKAEDVVSSMLAKGF 120

Query: 121 ILGKDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQV 180
           ILGKDA+  AK+ DEKHQL+STASAKVA+FDKKIGFT+KI+ GT +V +KVREVDQK+QV
Sbjct: 121 ILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVGEKVREVDQKYQV 180

Query: 181 SEKTKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEET 240
           SEKTKSA A AE+ VS AGSAIMKNRY+LTG +WVTGAF+KVAKAA EVGQK KEKV   
Sbjct: 181 SEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAEEVGQKAKEKVGMA 240

Query: 241 EEEQRKKMVEDFAQVHLSESPKGGGGGGAAAAAAAASAPPEPQQ-----RPKPEPAQERN 295
           EEE ++K+V++FA+VHLSESPK       A   +  S  PE ++      P+ +P Q+++
Sbjct: 241 EEEDKRKVVDEFARVHLSESPKAASSTQEAERESKLSESPEAKKDSEHLEPQSKPLQQQS 300

[Close]

BLAST of Carg23395 vs. TAIR 10
Match: AT5G46870.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 320.5 bits (820), Expect = 1.5e-87
Identity = 184/295 (62.37%), Postives = 233/295 (78.98%), Query Frame = 0


Query: 1   MSVRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVL 60
           MS+ TVKVSNVSL A+ERD+ EFFSFSGDI YLE QSE++ S++AYVTFKD+QGAETAVL
Sbjct: 1   MSMVTVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAE-----SAFRKAEDVVSGML 120
           L+G+TIVD SV +T+ P+Y+LPP+A A+  +       ++      S FRKAEDVVSGM+
Sbjct: 61  LTGSTIVDSSVTVTMSPDYQLPPDALASIESLKESNKSSSPTREDVSVFRKAEDVVSGMI 120

Query: 121 AKGFILGKDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQ 180
           +KGF+LGKDA+  AK+ DEKHQL+STASA+V +FDK+IGFTEKI+ GT++VS+KV+EVDQ
Sbjct: 121 SKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTVVSEKVKEVDQ 180

Query: 181 KFQVSEKTKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEK 240
           KFQV+EKTKSA A AE+ VS AGSAIMKNRY+LTG +WVTGAF++V+KAA EVGQK KEK
Sbjct: 181 KFQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVSKAAEEVGQKAKEK 240

Query: 241 V--EETEEEQRKKMVEDFAQVHLSESPKGGGGGGAAAAAAAASAPPEPQQRPKPE 289
           V   E EEE++KK+V++ A VHL+ESPK      A   +   S  PE + +P  E
Sbjct: 241 VGLAEEEEEEKKKVVDEVAIVHLTESPK------ALDQSEQDSKLPESKSQPHKE 289

[Close]

BLAST of Carg23395 vs. TAIR 10
Match: AT5G16840.2 (binding partner of acd11 1 )

HSP 1 Score: 274.6 bits (701), Expect = 9.1e-74
Identity = 158/263 (60.08%), Postives = 201/263 (76.43%), Query Frame = 0


Query: 3   VRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVLLS 62
           VR+VKV N+S GA+E DI EFFSFSG++E +++QS +E S  AYVTFK+ QGAETAVLLS
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSSNEHS--AYVTFKETQGAETAVLLS 64

Query: 63  GATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFILG 122
           GA+I D SV I L P Y  P    AAP A    +   AES  +KAEDVVS MLAKGFILG
Sbjct: 65  GASIADQSVIIELAPNYSPP----AAPHA--ETQSSGAESVVQKAEDVVSSMLAKGFILG 124

Query: 123 KDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVSEK 182
           KDAV  AKAFDEKH  +STA+A VA+ D+KIG ++K++AGTSLV++K++ VDQ FQV+E+
Sbjct: 125 KDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQVTER 184

Query: 183 TKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETEEE 242
           TKS +A AE+ VS+AGSA+MKNRY+LTG SW  GAF++VA+AAGEVGQKTKEKVE  +  
Sbjct: 185 TKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKVEAEQPS 244

Query: 243 Q----RKKMVEDFAQVHLSESPK 262
           Q    ++++ E ++ +H SE  K
Sbjct: 245 QPAQSQQQLPEGYSPIHSSEYSK 259

[Close]

BLAST of Carg23395 vs. TAIR 10
Match: AT5G16840.3 (binding partner of acd11 1 )

HSP 1 Score: 272.3 bits (695), Expect = 4.5e-73
Identity = 159/265 (60.00%), Postives = 203/265 (76.60%), Query Frame = 0


Query: 1   MSVRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVL 60
           M+VR+VKV N+S GA+E DI EFFSFSG++E +++QS +E S  AYVTFK+ QGAETAVL
Sbjct: 1   MAVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQS-NEHS--AYVTFKETQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFI 120
           LSGA+I D SV I L P Y  P    AAP A    +   AES  +KAEDVVS MLAKGFI
Sbjct: 61  LSGASIADQSVIIELAPNYSPP----AAPHA--ETQSSGAESVVQKAEDVVSSMLAKGFI 120

Query: 121 LGKDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180
           LGKDAV  AKAFDEKH  +STA+A VA+ D+KIG ++K++AGTSLV++K++ VDQ FQV+
Sbjct: 121 LGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQVT 180

Query: 181 EKTKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETE 240
           E+TKS +A AE+ VS+AGSA+MKNRY+LTG SW  GAF++VA+AAGEVGQKTKEKVE  +
Sbjct: 181 ERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKVEAEQ 240

Query: 241 EEQ----RKKMVEDFAQVHLSESPK 262
             Q    ++++ E ++ +H SE  K
Sbjct: 241 PSQPAQSQQQLPEGYSPIHSSEYSK 256

[Close]

BLAST of Carg23395 vs. TAIR 10
Match: AT5G16840.1 (binding partner of acd11 1 )

HSP 1 Score: 270.4 bits (690), Expect = 1.7e-72
Identity = 158/263 (60.08%), Postives = 201/263 (76.43%), Query Frame = 0


Query: 3   VRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVLLS 62
           VR+VKV N+S GA+E DI EFFSFSG++E +++QS +E S  AYVTFK+ QGAETAVLLS
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQS-NEHS--AYVTFKETQGAETAVLLS 64

Query: 63  GATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFILG 122
           GA+I D SV I L P Y  P    AAP A    +   AES  +KAEDVVS MLAKGFILG
Sbjct: 65  GASIADQSVIIELAPNYSPP----AAPHA--ETQSSGAESVVQKAEDVVSSMLAKGFILG 124

Query: 123 KDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVSEK 182
           KDAV  AKAFDEKH  +STA+A VA+ D+KIG ++K++AGTSLV++K++ VDQ FQV+E+
Sbjct: 125 KDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQVTER 184

Query: 183 TKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETEEE 242
           TKS +A AE+ VS+AGSA+MKNRY+LTG SW  GAF++VA+AAGEVGQKTKEKVE  +  
Sbjct: 185 TKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKVEAEQPS 244

Query: 243 Q----RKKMVEDFAQVHLSESPK 262
           Q    ++++ E ++ +H SE  K
Sbjct: 245 QPAQSQQQLPEGYSPIHSSEYSK 258

The following BLAST results are available for this feature:

BLAST of Carg23395 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028259.1	4.3e-150	100.00	Binding partner of ACD11 1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6596723.1	9.3e-145	99.66	Binding partner of ACD11 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022924148.1	5.1e-143	98.63	binding partner of ACD11 1-like isoform X3 [Cucurbita moschata]	[more]
XP_022924007.1	1.5e-142	98.28	binding partner of ACD11 1-like isoform X1 [Cucurbita moschata]	[more]
XP_022924074.1	5.6e-142	98.62	binding partner of ACD11 1-like isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg23395 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LFD5	2.4e-71	60.08	Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1	[more]
P87216	9.7e-04	25.68	Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN...	[more]

BLAST of Carg23395 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EBK2	2.5e-143	98.63	binding partner of ACD11 1-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1E7P2	7.2e-143	98.28	binding partner of ACD11 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1E858	2.7e-142	98.62	binding partner of ACD11 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1L2C1	4.4e-140	96.91	binding partner of ACD11 1-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1KTA3	3.7e-139	96.89	binding partner of ACD11 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of Carg23395 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17720.1	4.7e-94	65.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G46870.1	1.5e-87	62.37	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G16840.2	9.1e-74	60.08	binding partner of acd11 1	[more]
AT5G16840.3	4.5e-73	60.00	binding partner of acd11 1	[more]
AT5G16840.1	1.7e-72	60.08	binding partner of acd11 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 5..74 e-value: 6.6E-6 score: 35.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 7..66 e-value: 1.6E-5 score: 24.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 4..78 score: 10.257856
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..74 e-value: 1.6E-8 score: 36.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 226..297
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 227..252
None	No IPR available	PANTHER	PTHR32343:SF37	BINDING PARTNER OF ACD11 1	coord: 1..261
None	No IPR available	PANTHER	PTHR32343	SERINE/ARGININE-RICH SPLICING FACTOR	coord: 1..261
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 3..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23395-RA	Carg23395-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding