Carg23361 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg23361
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr01: 8920633 .. 8921985 (-)
RNA-Seq ExpressionCarg23361
SyntenyCarg23361
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTGTGCTCAGTCCTCCATTTCAAGGGTAGATATAAATCTAGTTCCTCCTTGTGAATGTGAAGCAGCCTCCATTTATGAATGCTTGGAGAAACATTTTCAAATAAGAATATCAAAGAAGTTGAGGTATAAATTTCTTGGACTCTCTTTCAATGCATTTATTTTCCCCCATTATTTGCTATCAGTTGTTTTGACCTGCTATGTTCTAAATAGGTAAGACATCTTTAGAAAGACACCTATCAATCATCAAACTATGCTTCCCTTCGACTTTTATGCCGCAACCTTAAAAGTTTTAGAACACTATTGAGGATAATTTTTTTTCTCTTTTAAATTGCTAAAAGATTTTGAAAATTTAAGGGTAAAAAGCCAACTAGTGAAAGAAAAAAAAAAGTAGAAATCTAACGGTTCTTGGTGCTCATAATGCCGCATAGTTGAAAATGTACAACCGTGACATGGGGAGTGCCTCCCTTGTTCTTCTCTTCTCCTTTACCTTAGAATTTTGTCTTGTATTGGTCTTTTTATTGTTTGTTTTGCCTTTGAGTATCGTTTTAACTTCGATTTTTCCTTAGTCTAATTTTACACATAATATCGGTCGACACTCTTGAATTGGAATTCATGGTTTGACTTTTGTTGTAGGCTTAATAGAGTTCGATTTGAGAGTAATTGTTTGTCATTTTTAGTTAGTCTCCTTAAAGACATTGCCTATTTGGCCTTATGAGTTTTTTTTTTTTTTTTCCTTGGGCTTAAGTGCTCAAAAGATAGACCTTGGAATATCCTTAAGATTTTTCATCAAACCTCGTTGTGACAACTCTAGGTTTTCACAGGCTTTAAGAGTTTCTTAGATTATCCTTATGATTACTCATTAAACACTTTTGGGATGATTATGAATTTTTATGGTTAATATTGATTTCTGAAAATTAATCTTCGTTCTCCACGATGGATGATGGGGGACGAAACAAGAGTCGGAAATCCAGTGTAATTGCATAATGTCTCATTAGGTAAAAAATAGCGAATACTCTAGATATCAAATCTTAACACCAAAATTCATGCTGCTAAGTTGTTCAACTAGGCTCAATAGTAAGTTCAATATAGTCTAATAAATTAAATTAAGCACATATGTTCCGTGGGATAGAGTATTGATTATCATCTTAATTGTTGATACTTCTAAACCCTAAACCCTAAACTTCGTAGTACAGTTTCAAGTTAGTTATATTTCATTATCATCTCTACGTGCTTGGTTAAAACTCTAAGGACATTCGTGATATGCTTACATTTCAGACAAGGCAAAGAAAGTGTGATGAGGAGGAGGAGGCATTTAGTAAGTGTGAAAATTGGCTCTCAAGTATATTAA

mRNA sequence

ATGGCGTGTGCTCAGTCCTCCATTTCAAGGGTAGATATAAATCTAGTTCCTCCTTGTGAATGTGAAGCAGCCTCCATTTATGAATGCTTGGAGAAACATTTTCAAATAAGAATATCAAAGAAGTTGAGACAAGGCAAAGAAAGTGTGATGAGGAGGAGGAGGCATTTAGTAAGTGTGAAAATTGGCTCTCAAGTATATTAA

Coding sequence (CDS)

ATGGCGTGTGCTCAGTCCTCCATTTCAAGGGTAGATATAAATCTAGTTCCTCCTTGTGAATGTGAAGCAGCCTCCATTTATGAATGCTTGGAGAAACATTTTCAAATAAGAATATCAAAGAAGTTGAGACAAGGCAAAGAAAGTGTGATGAGGAGGAGGAGGCATTTAGTAAGTGTGAAAATTGGCTCTCAAGTATATTAA

Protein sequence

MACAQSSISRVDINLVPPCECEAASIYECLEKHFQIRISKKLRQGKESVMRRRRHLVSVKIGSQVY
Homology
[Close]
BLAST of Carg23361 vs. NCBI nr
Match: KAG7037296.1 (hypothetical protein SDJN02_00921, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.1 bits (331), Expect = 1.7e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MACAQSSISRVDINLVPPCECEAASIYECLEKHFQIRISKKLRQGKESVMRRRRHLVSVK 60
          MACAQSSISRVDINLVPPCECEAASIYECLEKHFQIRISKKLRQGKESVMRRRRHLVSVK
Sbjct: 1  MACAQSSISRVDINLVPPCECEAASIYECLEKHFQIRISKKLRQGKESVMRRRRHLVSVK 60

Query: 61 IGSQVY 67
          IGSQVY
Sbjct: 61 IGSQVY 66

[Close]
BLAST of Carg23361 vs. NCBI nr
Match: KAG6607722.1 (Carbamoyl-phosphate synthase large chain, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 88.2 bits (217), Expect = 2.9e-14
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0 

Query: 1    MACAQSSISRVDINLVPPCECEAASIYECLEKHFQIRISKKL 43
            MACAQSSISRVDINLVPPCECEAASIYECLEKHFQIRISKKL
Sbjct: 1186 MACAQSSISRVDINLVPPCECEAASIYECLEKHFQIRISKKL 1227

The following BLAST results are available for this feature:
BLAST of Carg23361 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037296.11.7e-27100.00hypothetical protein SDJN02_00921, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6607722.12.9e-14100.00Carbamoyl-phosphate synthase large chain, chloroplastic, partial [Cucurbita argy... [more]
BLAST of Carg23361 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg23361 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg23361 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg23361-RACarg23361-RAmRNA