Carg23313 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg23313
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein GIGANTEA-like isoform X1
Location	Carg_Chr06: 10577588 .. 10578412 (+)
RNA-Seq Expression	Carg23313
Synteny	Carg23313

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAACGCCGTGCCATGAAGTTCATAAGCTGGTGGATATCATGTATATTCCATTTCATTTCTTCCATGGAGTCATCGCACGGTTGGTCAATGTTCGTGGGATGGGACAGGGGTTGCTCCACCAATGGATAAGGTGGGATTTGTCTTTCCCCACCATTAGGTCCTTTCTTAGAAAGTAGTCTGATACCAAAACTGATGCAATCACCTTGCTGGAAAATTTCTATATCAAGAAAAAACTGCTTTTTGTAACAAATAAGGCTCCGATATAGAGGGTAGCCACACTGACCAAATAACAAACTAAGCAAACAGCCAAATAATAATAAAATAAAAAACCAAGAAAACAATCGATGATAGCTAACCAAATTAACAGCTTAAAGAAGTTTATTTATTATTATTATTTTTTTTAAAGGCACAACCTGAAAACTACACCACTATAATGGTTTCACTAATTCACTGTACATCTTGTGTTTTATTTTGAGGTAGCTTTATTTTCTGATATATATTCTATAGTTATGAATAATGGCAAGATGCATTATGAATACTTTTTACCCCATCAGAACCATTATTCTGAACAATGGGCCCTTGCATGTGGGGAGATACTCCGGATCTTGACTCATTACAATCGGCCAATATACAAGACGGAACAAAAGAATGGTGAAACAGAAAGAAGCAATAGTGGCTGCGTTGCTACGTCTCGTGACACCAATGATGGGGAATTTGTTCAAGTGCCTCTGCAACACGAGAGGAAACCTATAAGACCTTTGTCCCCATGGATTACTGACATATTGCTTGCTGCACCATTGGGCATCAGAAGCGACTATTTCCGC

mRNA sequence

TAAACGCCGTGCCATGAAGTTCATAAGCTGGTGGATATCATGTATATTCCATTTCATTTCTTCCATGGAGTCATCGCACGGTTGGTCAATGTTCGTGGGATGGGACAGGGGTTGCTCCACCAATGGATAAGAACCATTATTCTGAACAATGGGCCCTTGCATGTGGGGAGATACTCCGGATCTTGACTCATTACAATCGGCCAATATACAAGACGGAACAAAAGAATGGTGAAACAGAAAGAAGCAATAGTGGCTGCGTTGCTACGTCTCGTGACACCAATGATGGGGAATTTGTTCAAGTGCCTCTGCAACACGAGAGGAAACCTATAAGACCTTTGTCCCCATGGATTACTGACATATTGCTTGCTGCACCATTGGGCATCAGAAGCGACTATTTCCGC

Coding sequence (CDS)

ATGGATAAGAACCATTATTCTGAACAATGGGCCCTTGCATGTGGGGAGATACTCCGGATCTTGACTCATTACAATCGGCCAATATACAAGACGGAACAAAAGAATGGTGAAACAGAAAGAAGCAATAGTGGCTGCGTTGCTACGTCTCGTGACACCAATGATGGGGAATTTGTTCAAGTGCCTCTGCAACACGAGAGGAAACCTATAAGACCTTTGTCCCCATGGATTACTGACATATTGCTTGCTGCACCATTGGGCATCAGAAGCGACTATTTCCGC

Protein sequence

MDKNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPLQHERKPIRPLSPWITDILLAAPLGIRSDYFR

Homology

[Close]

BLAST of Carg23313 vs. NCBI nr
Match: KAG7029182.1 (Protein GIGANTEA, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201.4 bits (511), Expect = 3.3e-48
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MDKNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQV 60
          MDKNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQV
Sbjct: 1  MDKNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQV 60

Query: 61 PLQHERKPIRPLSPWITDILLAAPLGIRSDYFR 94
          PLQHERKPIRPLSPWITDILLAAPLGIRSDYFR
Sbjct: 61 PLQHERKPIRPLSPWITDILLAAPLGIRSDYFR 93

[Close]

BLAST of Carg23313 vs. NCBI nr
Match: XP_022935850.1 (protein GIGANTEA-like isoform X5 [Cucurbita moschata])

HSP 1 Score: 195.7 bits (496), Expect = 1.8e-46
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 3   KNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPL 62
           KNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVAT+RDTNDGEFVQVPL
Sbjct: 29  KNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATTRDTNDGEFVQVPL 88

Query: 63  QHERKPIRPLSPWITDILLAAPLGIRSDYFR 94
           QHERKPIRPLSPWITDILLAAPLGIRSDYFR
Sbjct: 89  QHERKPIRPLSPWITDILLAAPLGIRSDYFR 119

[Close]

BLAST of Carg23313 vs. NCBI nr
Match: KAG6592205.1 (Protein GIGANTEA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 195.3 bits (495), Expect = 2.4e-46
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 3   KNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPL 62
           +NHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPL
Sbjct: 124 ENHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPL 183

Query: 63  QHERKPIRPLSPWITDILLAAPLGIRSDYFR 94
           QHERKPIRPLSPWITDILLAAPLGIRSDYFR
Sbjct: 184 QHERKPIRPLSPWITDILLAAPLGIRSDYFR 214

[Close]

BLAST of Carg23313 vs. NCBI nr
Match: XP_022935847.1 (protein GIGANTEA-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 194.1 bits (492), Expect = 5.3e-46
Identity = 89/91 (97.80%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 3   KNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPL 62
           +NHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVAT+RDTNDGEFVQVPL
Sbjct: 124 ENHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATTRDTNDGEFVQVPL 183

Query: 63  QHERKPIRPLSPWITDILLAAPLGIRSDYFR 94
           QHERKPIRPLSPWITDILLAAPLGIRSDYFR
Sbjct: 184 QHERKPIRPLSPWITDILLAAPLGIRSDYFR 214

[Close]

BLAST of Carg23313 vs. NCBI nr
Match: XP_022935848.1 (protein GIGANTEA-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 194.1 bits (492), Expect = 5.3e-46
Identity = 89/91 (97.80%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 3   KNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPL 62
           +NHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVAT+RDTNDGEFVQVPL
Sbjct: 119 ENHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATTRDTNDGEFVQVPL 178

Query: 63  QHERKPIRPLSPWITDILLAAPLGIRSDYFR 94
           QHERKPIRPLSPWITDILLAAPLGIRSDYFR
Sbjct: 179 QHERKPIRPLSPWITDILLAAPLGIRSDYFR 209

[Close]

BLAST of Carg23313 vs. ExPASy Swiss-Prot
Match: Q9SQI2 (Protein GIGANTEA OS=Arabidopsis thaliana OX=3702 GN=GI PE=1 SV=2)

HSP 1 Score: 140.6 bits (353), Expect = 9.1e-33
Identity = 66/91 (72.53%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 3   KNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPL 62
           +N YSEQWALACGEILRILTHYNRPIYKTEQ+NG+TER+      TS           P 
Sbjct: 121 ENDYSEQWALACGEILRILTHYNRPIYKTEQQNGDTERNCLSKATTSGSPTSEPKAGSPT 180

Query: 63  QHERKPIRPLSPWITDILLAAPLGIRSDYFR 94
           QHERKP+RPLSPWI+DILLAAPLGIRSDYFR
Sbjct: 181 QHERKPLRPLSPWISDILLAAPLGIRSDYFR 211

[Close]

BLAST of Carg23313 vs. ExPASy Swiss-Prot
Match: Q9AWL7 (Protein GIGANTEA OS=Oryza sativa subsp. japonica OX=39947 GN=GI PE=2 SV=2)

HSP 1 Score: 117.9 bits (294), Expect = 6.3e-26
Identity = 56/92 (60.87%), Postives = 71/92 (77.17%), Query Frame = 0


Query: 3   KNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPL 62
           +  YSEQWALACGEILR+LTHYNRPI+K + ++ E E S++   A+S ++ +      P 
Sbjct: 121 EKEYSEQWALACGEILRVLTHYNRPIFKVDHQHSEAECSSTSDQASSCESMEKRANGSPR 180

Query: 63  -QHERKPIRPLSPWITDILLAAPLGIRSDYFR 94
            + +RKP+RPLSPWITDILLAAPLGIRSDYFR
Sbjct: 181 NEPDRKPLRPLSPWITDILLAAPLGIRSDYFR 212

[Close]

BLAST of Carg23313 vs. ExPASy TrEMBL
Match: A0A6J1FBU6 (protein GIGANTEA-like isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111442632 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 8.8e-47
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 3   KNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPL 62
           KNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVAT+RDTNDGEFVQVPL
Sbjct: 29  KNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATTRDTNDGEFVQVPL 88

Query: 63  QHERKPIRPLSPWITDILLAAPLGIRSDYFR 94
           QHERKPIRPLSPWITDILLAAPLGIRSDYFR
Sbjct: 89  QHERKPIRPLSPWITDILLAAPLGIRSDYFR 119

[Close]

BLAST of Carg23313 vs. ExPASy TrEMBL
Match: A0A6J1F5V5 (protein GIGANTEA-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442632 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.6e-46
Identity = 89/91 (97.80%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 3   KNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPL 62
           +NHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVAT+RDTNDGEFVQVPL
Sbjct: 119 ENHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATTRDTNDGEFVQVPL 178

Query: 63  QHERKPIRPLSPWITDILLAAPLGIRSDYFR 94
           QHERKPIRPLSPWITDILLAAPLGIRSDYFR
Sbjct: 179 QHERKPIRPLSPWITDILLAAPLGIRSDYFR 209

[Close]

BLAST of Carg23313 vs. ExPASy TrEMBL
Match: A0A6J1F6L3 (protein GIGANTEA-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111442632 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.6e-46
Identity = 89/91 (97.80%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 3   KNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPL 62
           +NHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVAT+RDTNDGEFVQVPL
Sbjct: 75  ENHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATTRDTNDGEFVQVPL 134

Query: 63  QHERKPIRPLSPWITDILLAAPLGIRSDYFR 94
           QHERKPIRPLSPWITDILLAAPLGIRSDYFR
Sbjct: 135 QHERKPIRPLSPWITDILLAAPLGIRSDYFR 165

[Close]

BLAST of Carg23313 vs. ExPASy TrEMBL
Match: A0A6J1F6R0 (protein GIGANTEA-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111442632 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.6e-46
Identity = 89/91 (97.80%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 3   KNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPL 62
           +NHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVAT+RDTNDGEFVQVPL
Sbjct: 124 ENHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATTRDTNDGEFVQVPL 183

Query: 63  QHERKPIRPLSPWITDILLAAPLGIRSDYFR 94
           QHERKPIRPLSPWITDILLAAPLGIRSDYFR
Sbjct: 184 QHERKPIRPLSPWITDILLAAPLGIRSDYFR 214

[Close]

BLAST of Carg23313 vs. ExPASy TrEMBL
Match: A0A6J1FBN3 (protein GIGANTEA-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111442632 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.6e-46
Identity = 89/91 (97.80%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 3   KNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPL 62
           +NHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVAT+RDTNDGEFVQVPL
Sbjct: 119 ENHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATTRDTNDGEFVQVPL 178

Query: 63  QHERKPIRPLSPWITDILLAAPLGIRSDYFR 94
           QHERKPIRPLSPWITDILLAAPLGIRSDYFR
Sbjct: 179 QHERKPIRPLSPWITDILLAAPLGIRSDYFR 209

[Close]

BLAST of Carg23313 vs. TAIR 10
Match: AT1G22770.1 (gigantea protein (GI) )

HSP 1 Score: 140.6 bits (353), Expect = 6.4e-34
Identity = 66/91 (72.53%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 3   KNHYSEQWALACGEILRILTHYNRPIYKTEQKNGETERSNSGCVATSRDTNDGEFVQVPL 62
           +N YSEQWALACGEILRILTHYNRPIYKTEQ+NG+TER+      TS           P 
Sbjct: 121 ENDYSEQWALACGEILRILTHYNRPIYKTEQQNGDTERNCLSKATTSGSPTSEPKAGSPT 180

Query: 63  QHERKPIRPLSPWITDILLAAPLGIRSDYFR 94
           QHERKP+RPLSPWI+DILLAAPLGIRSDYFR
Sbjct: 181 QHERKPLRPLSPWISDILLAAPLGIRSDYFR 211

The following BLAST results are available for this feature:

BLAST of Carg23313 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029182.1	3.3e-48	100.00	Protein GIGANTEA, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022935850.1	1.8e-46	98.90	protein GIGANTEA-like isoform X5 [Cucurbita moschata]	[more]
KAG6592205.1	2.4e-46	98.90	Protein GIGANTEA, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022935847.1	5.3e-46	97.80	protein GIGANTEA-like isoform X2 [Cucurbita moschata]	[more]
XP_022935848.1	5.3e-46	97.80	protein GIGANTEA-like isoform X3 [Cucurbita moschata]	[more]

BLAST of Carg23313 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SQI2	9.1e-33	72.53	Protein GIGANTEA OS=Arabidopsis thaliana OX=3702 GN=GI PE=1 SV=2	[more]
Q9AWL7	6.3e-26	60.87	Protein GIGANTEA OS=Oryza sativa subsp. japonica OX=39947 GN=GI PE=2 SV=2	[more]

BLAST of Carg23313 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FBU6	8.8e-47	98.90	protein GIGANTEA-like isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111442632 P...	[more]
A0A6J1F5V5	2.6e-46	97.80	protein GIGANTEA-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442632 P...	[more]
A0A6J1F6L3	2.6e-46	97.80	protein GIGANTEA-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111442632 P...	[more]
A0A6J1F6R0	2.6e-46	97.80	protein GIGANTEA-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111442632 P...	[more]
A0A6J1FBN3	2.6e-46	97.80	protein GIGANTEA-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111442632 P...	[more]

BLAST of Carg23313 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22770.1	6.4e-34	72.53	gigantea protein (GI)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026211	GIGANTEA	PRINTS	PR02081	GIGANTEA	coord: 6..30 score: 94.92 coord: 66..86 score: 91.03 coord: 86..93 score: 42.11
IPR026211	GIGANTEA	PANTHER	PTHR36319	PROTEIN GIGANTEA	coord: 3..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23313-RA	Carg23313-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048578	positive regulation of long-day photoperiodism, flowering
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009637	response to blue light
biological_process	GO:0009409	response to cold
biological_process	GO:0010218	response to far red light
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0010378	temperature compensation of the circadian clock
biological_process	GO:2000028	regulation of photoperiodism, flowering
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005654	nucleoplasm