Carg23244 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg23244
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDUF2052 domain-containing protein
LocationCarg_Chr16: 8919424 .. 8922210 (-)
RNA-Seq ExpressionCarg23244
SyntenyCarg23244
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACGGCGACGATGGAGCCGACGGAGAAAGCGGCCACGGGATTGAATTGCGAAGCCATGGATTGCTTGTCGGAAAGGCTTTCGTTGCAGGTAAAATCTTTACTGCCACGAATCCGTCTCAACGCAAGGCCAATCTGCTCGACCTTCTTTCTCGCGATGTCGCCGTGTTTCTTCGCCTCTCTATAACTCTGGATTTTTGCAACTTCTGGTATGGATTCCCCCCCAAATTTAAAAGCGCCCTTAGCTTGATTGATCGAATTCGAAGGATAAATTTTGAGAGATTTGAATGAGTAGGTTTTATATGGTGAGGAGATTTAATGGAAATTATCTGAATGCTGTGCCCTATGGTTCTGTTTCATAATCATCTAGCTTTTGGAAATTAAGTTTATAAACGCTACTTCCATCCATTCCATGAGTTTCTTTTCTTTGGTAATTATTTTGATTTTTATCCTTGGATGTTGCCTTGTTCTGTTCATTTAAATATTCTTATGTTTGTTGCTCCTCCAACTCTGATTGATGTAGAGCGTTATGGATCATAGTTGATATCCATTGAGCTCCATGAGTTTGATGCTCTTAAGGATGATCATGAGATCAATGTGCATTGAAAGCACATTTGGAGTGTAAAGAGTCCGATATCAGATGAACTACACTTTAGGTCAGTTATTGTGAAGAATAGGAGACGAGCATATCTGAATAAACTGATATGTGATGGCCAGTACTTCTCGGAGGATGCAATGAGGGGGAGAGAGCCTTTTTTGCATCATGAATACTTAGGGAAGTTTCAGGATCCAAGTGGGAGAGGAATGGCAAGACCAGGGGAGCGATGATGAGGAGATTAGAGGAAGCAATGTTGGTTGCTAAGATCAGAGTAGAGCAATGTAGGTGTGAGATCCCACATCGGGTTGGAGAGGGGAACGATGAATTTCTTATAAGGGTGTGGAAACCTCTCCCTAATAGACACGTTTTAAAAATCGTGAAGCTGACGATGATACGTAACGACCCGAGGTAACTAGCTTGCTAATGGAGCTCATTCCATTGATAGGTAATGATATTTGACTCTTTCATTTGTAGGTAACCAGGGCCATGGATGAACAGCCAATAGTCAAGCTGCCGAGGTGGGTCTGCTAGGGAGAAGTTTCCACACCCTTATAAAGAATGCTTTGTTCTCCTCTTCCACCGATGTGAGATCTCACAATCCACCCCCTTTCGAGGTCTAGCGTTCTCGCTGGCACACCGTCCGGTGTCCACCCCTTCGGGGCTTAGCGTCTTCTCTAGCACGCCGCCTGGTGGAGGGTGGATTGTGAGATCCCATATTAGTTGGAGGGGAACAAAACATTCTTTATAAGGGTGTGGAAACCCCTCCCTACTAGACACGTTTTAAAAATCGTGTAGCTGATGACGATACATACGAGGTAAATAAGCTTGCTAATGGAGCTCATTCCATTGATAGGTAATGATATTGGACTCTATTTGTAGGTAACCAGTGCCATGGATGAACAGACAATAGTCAAGCTTTCGAGGGTGTGTTTGCTAGGGAGAGGTTTCCGCACCCTTATAAAGAATGCTTTGTTCTCCTCTTCCACCGTTGTAAGATCTCACAATCCACCCTCCTTCAAGGTCCAACGTCGTTGCTGGCACACCGTCCAGTGTCCACCCCCTTTGGGGCTCAACGTCTTCGTTGGCACGCCGCCTGACTTATGGGGGTGGATTATGAGATTCCATATCGGTTGGAGGGGAACAAAACATTCTTTATAAGGGTGTATAAACCTCTCCCTAGCAAACACGTCTTAAAAACCTTGAGGGAAAGTTCAAAGAGGACAATATTTGCTAGCGGTGGGCTTGGACGGTTATAAAAATAGAATTTATACGGCCACACCCTCGCGAGGAAGACAAAGACAAGCTGAGTAATACACTTTCTAGTTTCTATTAATGGTTCTCATCTATCATGCCAAATACTAAATATTGGGAAATTTTGTTAGCATAATAAGATGATTCTTTCAATTGCTTAATGTTTTTTCACCACATGCTACATTTTGTTTCATTCTTATTACAAACTCTCAGCTCTTATTCAGATCACGAAACTGGAAAGATACGAGATGATGCAAGTGCGAACGAGCTGATGATGATCCGTGATGAGATGATGAATGCAACTAAAAGACTCGGCTGAATGATGTCGTAATCCTGGTAAGATTAAAAAATGATCTCTGTGCTAACTTTTAATGGCAAGGGTAGAGGTTCTTCGAGGTGTATGGTGATATAATTGTGTGCCACACTCCATGAGATTGGTATTAGCCTTTTGCAGTTCCTTTAGCTTTTGCCTCAACTGAAACCTTGCAAGTTCTACTCATGTTCTTTCTGTCTGATGAATATTTTTCCGTTTTTGAACTTAGTTTCTGAATGTGTGAATATTGAGCGGTAGAAGTAAGGAGATTTGAACGTTTGACTTCGAAGTCCGAAAAAAATGTACCTTGACTTGTTAAGCTATGGTTAAGTTGACATCATTGTATAGCTATTTTTACTAGAGATGTTCATTTTACTTGCGGGGTCGATAGAGAATTTCTCGTTTAGACTGAGAATGAGGAAGGGAATCAAGACTATGTAACATTTGAATTTTTAAAAATTACTTTCGTAGAACCTTGTGTGCGGGAATCTCTGTCCTGGTTCTCATAAATGTAAATTGAGAATTTTTTAGGGACGAAGATAGCAAAGGCTTCCTTATCTTCGTCCCGGTAAACATCTCTAATTTTTTTTTTTTTACTTGATAACATTTAAAATCAGCTAAAT

mRNA sequence

ATGGAAACGGCGACGATGGAGCCGACGGAGAAAGCGGCCACGGGATTGAATTGCGAAGCCATGGATTGCTTGTCGGAAAGGCTTTCGTTGCAGAGTCCGATATCAGATGAACTACACTTTAGGTCAGTTATTGTGAAGAATAGGAGACGAGCATATCTGAATAAACTGATATGTGATGGCCACTCTTATTCAGATCACGAAACTGGAAAGATACGAGATGATGCAAGTGCGAACGAGCTGATGATGATCCGTGATGAGATGATGAATGCAACTAAAAGACTCGGCTGAATGATGTCGTAATCCTGGTAAGATTAAAAAATGATCTCTGTGCTAACTTTTAATGGCAAGGGTAGAGGTTCTTCGAGGTGTATGGTGATATAATTGTGTGCCACACTCCATGAGATTGGTATTAGCCTTTTGCAGTTCCTTTAGCTTTTGCCTCAACTGAAACCTTGCAAGTTCTACTCATGTTCTTTCTGTCTGATGAATATTTTTCCGTTTTTGAACTTAGTTTCTGAATGTGTGAATATTGAGCGGTAGAAGTAAGGAGATTTGAACGTTTGACTTCGAAGTCCGAAAAAAATGTACCTTGACTTGTTAAGCTATGGTTAAGTTGACATCATTGTATAGCTATTTTTACTAGAGATGTTCATTTTACTTGCGGGGTCGATAGAGAATTTCTCGTTTAGACTGAGAATGAGGAAGGGAATCAAGACTATGTAACATTTGAATTTTTAAAAATTACTTTCGTAGAACCTTGTGTGCGGGAATCTCTGTCCTGGTTCTCATAAATGTAAATTGAGAATTTTTTAGGGACGAAGATAGCAAAGGCTTCCTTATCTTCGTCCCGGTAAACATCTCTAATTTTTTTTTTTTTACTTGATAACATTTAAAATCAGCTAAAT

Coding sequence (CDS)

ATGGAAACGGCGACGATGGAGCCGACGGAGAAAGCGGCCACGGGATTGAATTGCGAAGCCATGGATTGCTTGTCGGAAAGGCTTTCGTTGCAGAGTCCGATATCAGATGAACTACACTTTAGGTCAGTTATTGTGAAGAATAGGAGACGAGCATATCTGAATAAACTGATATGTGATGGCCACTCTTATTCAGATCACGAAACTGGAAAGATACGAGATGATGCAAGTGCGAACGAGCTGATGATGATCCGTGATGAGATGATGAATGCAACTAAAAGACTCGGCTGA

Protein sequence

METATMEPTEKAATGLNCEAMDCLSERLSLQSPISDELHFRSVIVKNRRRAYLNKLICDGHSYSDHETGKIRDDASANELMMIRDEMMNATKRLG
Homology
[Close]
BLAST of Carg23244 vs. NCBI nr
Match: KAG7015691.1 (hypothetical protein SDJN02_23328, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 191.8 bits (486), Expect = 2.7e-45
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  METATMEPTEKAATGLNCEAMDCLSERLSLQSPISDELHFRSVIVKNRRRAYLNKLICDG 60
          METATMEPTEKAATGLNCEAMDCLSERLSLQSPISDELHFRSVIVKNRRRAYLNKLICDG
Sbjct: 1  METATMEPTEKAATGLNCEAMDCLSERLSLQSPISDELHFRSVIVKNRRRAYLNKLICDG 60

Query: 61 HSYSDHETGKIRDDASANELMMIRDEMMNATKRLG 96
          HSYSDHETGKIRDDASANELMMIRDEMMNATKRLG
Sbjct: 61 HSYSDHETGKIRDDASANELMMIRDEMMNATKRLG 95

[Close]
BLAST of Carg23244 vs. NCBI nr
Match: XP_022965224.1 (uncharacterized protein LOC111465143 isoform X1 [Cucurbita maxima])

HSP 1 Score: 105.5 bits (262), Expect = 2.5e-19
Identity = 64/110 (58.18%), Postives = 69/110 (62.73%), Query Frame = 0 

Query: 1   METATMEPTEKAATGLNCEAMDCLSERLSLQSPISDELHFRSVIVKNRRRAYLNKL---- 60
           METATME TEKAA GLNCEAMDCLSERLSL   I     F +     R+   L+ L    
Sbjct: 13  METATMETTEKAAEGLNCEAMDCLSERLSLPGRI-----FTATNPSQRKAILLDLLSRDV 72

Query: 61  -----------ICDGHSYSDHETGKIRDDASANELMMIRDEMMNATKRLG 96
                       C+  SYSDHETGK RDDASAN+LMMI DEMMNA KRLG
Sbjct: 73  AVFLGLSITLDFCNFCSYSDHETGKKRDDASANKLMMIHDEMMNAIKRLG 117

[Close]
BLAST of Carg23244 vs. NCBI nr
Match: XP_038906003.1 (coiled-coil domain-containing protein 97 [Benincasa hispida] >XP_038906004.1 coiled-coil domain-containing protein 97 [Benincasa hispida])

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-07
Identity = 52/136 (38.24%), Postives = 55/136 (40.44%), Query Frame = 0 

Query: 1   METATMEPTEKAAT-GLNCEAMDCLSERLSLQ---------------------------- 60
           ME ATME  E AA  GL+CEAMDCLSERLSLQ                            
Sbjct: 1   MELATMETAEAAAAKGLSCEAMDCLSERLSLQEDLYFPRALQSTATNPSQRKAILLDLLS 60

Query: 61  ------------------------------------------SPISDELHFRSVIVKNRR 66
                                                     SP SDELH RSVIVKNRR
Sbjct: 61  RDVAVFLERYGSQLTSSELHEFDALKDDYEINWHLKHLRSIKSPTSDELHTRSVIVKNRR 120

[Close]
BLAST of Carg23244 vs. NCBI nr
Match: XP_022923198.1 (uncharacterized protein LOC111430964 [Cucurbita moschata])

HSP 1 Score: 63.9 bits (154), Expect = 8.4e-07
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 1  METATMEPTEKAATGLNCEAMDCLSERLSLQ 32
          METATMEPTEKAATGLNCEAMDCLSERLSLQ
Sbjct: 1  METATMEPTEKAATGLNCEAMDCLSERLSLQ 31

[Close]
BLAST of Carg23244 vs. NCBI nr
Match: KAG6596899.1 (hypothetical protein SDJN03_10079, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-06
Identity = 45/124 (36.29%), Postives = 49/124 (39.52%), Query Frame = 0 

Query: 12  AATGLNCEAMDCLSERLSLQ---------------------------------------- 66
           AA GL+CEAMDCLSERLSLQ                                        
Sbjct: 5   AAKGLSCEAMDCLSERLSLQDGLYFPRALQSTATNPSQRKAILLDLLSRDVAVFLERYGS 64

[Close]
BLAST of Carg23244 vs. ExPASy TrEMBL
Match: A0A6J1HQE8 (uncharacterized protein LOC111465143 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465143 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.2e-19
Identity = 64/110 (58.18%), Postives = 69/110 (62.73%), Query Frame = 0 

Query: 1   METATMEPTEKAATGLNCEAMDCLSERLSLQSPISDELHFRSVIVKNRRRAYLNKL---- 60
           METATME TEKAA GLNCEAMDCLSERLSL   I     F +     R+   L+ L    
Sbjct: 13  METATMETTEKAAEGLNCEAMDCLSERLSLPGRI-----FTATNPSQRKAILLDLLSRDV 72

Query: 61  -----------ICDGHSYSDHETGKIRDDASANELMMIRDEMMNATKRLG 96
                       C+  SYSDHETGK RDDASAN+LMMI DEMMNA KRLG
Sbjct: 73  AVFLGLSITLDFCNFCSYSDHETGKKRDDASANKLMMIHDEMMNAIKRLG 117

[Close]
BLAST of Carg23244 vs. ExPASy TrEMBL
Match: A0A6J1E8W5 (uncharacterized protein LOC111430964 OS=Cucurbita moschata OX=3662 GN=LOC111430964 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.1e-07
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 1  METATMEPTEKAATGLNCEAMDCLSERLSLQ 32
          METATMEPTEKAATGLNCEAMDCLSERLSLQ
Sbjct: 1  METATMEPTEKAATGLNCEAMDCLSERLSLQ 31

[Close]
BLAST of Carg23244 vs. ExPASy TrEMBL
Match: A0A6J1F5X8 (coiled-coil domain-containing protein 97 OS=Cucurbita moschata OX=3662 GN=LOC111442400 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.3e-07
Identity = 45/124 (36.29%), Postives = 49/124 (39.52%), Query Frame = 0 

Query: 12  AATGLNCEAMDCLSERLSLQ---------------------------------------- 66
           AA GL+CEAMDCLSERLSLQ                                        
Sbjct: 5   AAKGLSCEAMDCLSERLSLQDGLYFPRALQSTATNPSQRKAILLDLLSRDVAVFLERYGS 64

[Close]
BLAST of Carg23244 vs. ExPASy TrEMBL
Match: A0A6J1DQL7 (coiled-coil domain-containing protein 97 OS=Momordica charantia OX=3673 GN=LOC111022667 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.9e-07
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 29  SLQSPISDELHFRSVIVKNRRRAYLNKLICDGHSYSD 66
           S++SP SDELH RSVIVKNRRRAYLNKLICDG  +S+
Sbjct: 96  SIKSPTSDELHSRSVIVKNRRRAYLNKLICDGQYFSE 132

[Close]
BLAST of Carg23244 vs. ExPASy TrEMBL
Match: A0A0A0L5C7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017060 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-05
Identity = 47/131 (35.88%), Postives = 51/131 (38.93%), Query Frame = 0 

Query: 6   MEPTEKA-ATGLNCEAMDCLSERLSLQ--------------------------------- 65
           ME  E A A GL+CEAMDCLSERLSLQ                                 
Sbjct: 1   METAETAGAKGLSCEAMDCLSERLSLQEDLYFPRALQSTASNPSQRKAILLDLLSRDVAV 60

[Close]
BLAST of Carg23244 vs. TAIR 10
Match: AT5G47090.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2052, coiled-coil (InterPro:IPR018613); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 1.4e-04
Identity = 19/34 (55.88%), Postives = 26/34 (76.47%), Query Frame = 0 

Query: 32  SPISDELHFRSVIVKNRRRAYLNKLICDGHSYSD 66
           SP S+E+  RSV V+NRR AYLNKL+ +G  +S+
Sbjct: 101 SPTSEEIKSRSVAVRNRRLAYLNKLVSEGQYFSE 134

The following BLAST results are available for this feature:
BLAST of Carg23244 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7015691.12.7e-45100.00hypothetical protein SDJN02_23328, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022965224.12.5e-1958.18uncharacterized protein LOC111465143 isoform X1 [Cucurbita maxima][more]
XP_038906003.11.3e-0738.24coiled-coil domain-containing protein 97 [Benincasa hispida] >XP_038906004.1 coi... [more]
XP_022923198.18.4e-07100.00uncharacterized protein LOC111430964 [Cucurbita moschata][more]
KAG6596899.11.1e-0636.29hypothetical protein SDJN03_10079, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg23244 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg23244 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HQE81.2e-1958.18uncharacterized protein LOC111465143 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1E8W54.1e-07100.00uncharacterized protein LOC111430964 OS=Cucurbita moschata OX=3662 GN=LOC1114309... [more]
A0A6J1F5X85.3e-0736.29coiled-coil domain-containing protein 97 OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1DQL76.9e-0778.38coiled-coil domain-containing protein 97 OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A0A0L5C71.3e-0535.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017060 PE=4 SV=1[more]
BLAST of Carg23244 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G47090.11.4e-0455.88unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2052... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg23244-RACarg23244-RAmRNA