Carg23142 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg23142
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Epidermal patterning factor-like protein
Location	Carg_Chr08: 3318312 .. 3318992 (-)
RNA-Seq Expression	Carg23142
Synteny	Carg23142

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCCTTCCTTCTTCCTTCAAATTGCCTCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCCTCACATTTCTTCCTTCTAAATCAGGTAATTTAGCATCTTAATCAAACCCCACTTGCTTGTTTTGCCATTTCAAAACTTGGGTTTTGCTTACCTTCTTCCCTTTGTTCATGGGTTTCGCTAGTTTTTAACGAATTGTTCGATGAAAATTTTGATGTTTTAAGACCGATTTGGAATGCCTTAAATATACGTAACAAATGGTCATTTCAAACACCCTTTTTTTTATTTGGTATTAATTAGATTCGTGAGAGTCTTCTCGTATTGACTAATTAAGAAAATGATAATAAGTATATAAATAATAATTTTTTTTTCTTTTTTTTTTTTTTGTAGGGTTGTTTTGGCCGAGGAGCGGCGGAGGGGGAAAAGAAACGGGGAATTTGGAGAAGGGTGAAAGAGAGAGTTATGTGGTGGATGAACAAAAGAAAATGGTGATTGGTTCCAGGCCGCCGGGGTGTGAGAACAAGTGCAAGAGTTGCAGGCCGTGCATGGCGGCGGCGGTGGTGCCGGCGCATAGAAAGAAATGGTTCAAAGCATTTGTTCCGTCGTCTGGAGTTGAAGATGATAGCTACTATCTTCTCTCGTGGAAATGCCGATGTGGGAATAAGATCTATCAGCCCTAG

mRNA sequence

ATGTCCCTTCCTTCTTCCTTCAAATTGCCTCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCCTCACATTTCTTCCTTCTAAATCAGGGTTGTTTTGGCCGAGGAGCGGCGGAGGGGGAAAAGAAACGGGGAATTTGGAGAAGGGTGAAAGAGAGAGTTATGTGGTGGATGAACAAAAGAAAATGGTGATTGGTTCCAGGCCGCCGGGGTGTGAGAACAAGTGCAAGAGTTGCAGGCCGTGCATGGCGGCGGCGGTGGTGCCGGCGCATAGAAAGAAATGGTTCAAAGCATTTGTTCCGTCGTCTGGAGTTGAAGATGATAGCTACTATCTTCTCTCGTGGAAATGCCGATGTGGGAATAAGATCTATCAGCCCTAG

Coding sequence (CDS)

ATGTCCCTTCCTTCTTCCTTCAAATTGCCTCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCCTCACATTTCTTCCTTCTAAATCAGGGTTGTTTTGGCCGAGGAGCGGCGGAGGGGGAAAAGAAACGGGGAATTTGGAGAAGGGTGAAAGAGAGAGTTATGTGGTGGATGAACAAAAGAAAATGGTGATTGGTTCCAGGCCGCCGGGGTGTGAGAACAAGTGCAAGAGTTGCAGGCCGTGCATGGCGGCGGCGGTGGTGCCGGCGCATAGAAAGAAATGGTTCAAAGCATTTGTTCCGTCGTCTGGAGTTGAAGATGATAGCTACTATCTTCTCTCGTGGAAATGCCGATGTGGGAATAAGATCTATCAGCCCTAG

Protein sequence

MSLPSSFKLPLLLFFFFFFFFLTFLPSKSGLFWPRSGGGGKETGNLEKGERESYVVDEQKKMVIGSRPPGCENKCKSCRPCMAAAVVPAHRKKWFKAFVPSSGVEDDSYYLLSWKCRCGNKIYQP

Homology

[Close]

BLAST of Carg23142 vs. NCBI nr
Match: KAG7025740.1 (Polygalacturonase, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 262.3 bits (669), Expect = 2.1e-66
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MSLPSSFKLPLLLFFFFFFFFLTFLPSKSGLFWPRSGGGGKETGNLEKGERESYVVDEQK 60
           MSLPSSFKLPLLLFFFFFFFFLTFLPSKSGLFWPRSGGGGKETGNLEKGERESYVVDEQK
Sbjct: 1   MSLPSSFKLPLLLFFFFFFFFLTFLPSKSGLFWPRSGGGGKETGNLEKGERESYVVDEQK 60

Query: 61  KMVIGSRPPGCENKCKSCRPCMAAAVVPAHRKKWFKAFVPSSGVEDDSYYLLSWKCRCGN 120
           KMVIGSRPPGCENKCKSCRPCMAAAVVPAHRKKWFKAFVPSSGVEDDSYYLLSWKCRCGN
Sbjct: 61  KMVIGSRPPGCENKCKSCRPCMAAAVVPAHRKKWFKAFVPSSGVEDDSYYLLSWKCRCGN 120

Query: 121 KIYQP 126
           KIYQP
Sbjct: 121 KIYQP 125

[Close]

BLAST of Carg23142 vs. NCBI nr
Match: KAG6593393.1 (Polygalacturonase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 254.6 bits (649), Expect = 4.4e-64
Identity = 123/125 (98.40%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MSLPSSFKLPLLLFFFFFFFFLTFLPSKSGLFWPRSGGGGKETGNLEKGERESYVVDEQK 60
           MSLPSSFKLPLLL  FFFFFFLTFLPSKSGLFWPRSGGGGKETGNLEKGERESYVVDEQK
Sbjct: 1   MSLPSSFKLPLLL--FFFFFFLTFLPSKSGLFWPRSGGGGKETGNLEKGERESYVVDEQK 60

Query: 61  KMVIGSRPPGCENKCKSCRPCMAAAVVPAHRKKWFKAFVPSSGVEDDSYYLLSWKCRCGN 120
           KMVIGSRPPGCENKCKSCRPCMAAAVVPAHRKKWFKAFVPSSGVEDDSYYLLSWKCRCGN
Sbjct: 61  KMVIGSRPPGCENKCKSCRPCMAAAVVPAHRKKWFKAFVPSSGVEDDSYYLLSWKCRCGN 120

Query: 121 KIYQP 126
           KIYQP
Sbjct: 121 KIYQP 123

[Close]

BLAST of Carg23142 vs. NCBI nr
Match: KAE8646441.1 (hypothetical protein Csa_015844 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 2.2e-23
Identity = 73/127 (57.48%), Postives = 83/127 (65.35%), Query Frame = 0


Query: 1   MSLPSSFKLPLLLFFFFFFFFLTFLPSKSGLFWPRSGGGGKETGNLEKGERESYVVDEQK 60
           +SL +S KL L L  FF F      P+  GL   RS  G  E G  E  E ++     ++
Sbjct: 7   ISLSTSLKLALTLAAFFSF----LPPTSVGLVLSRS--GRSELGKAENDEMKNL----EE 66

Query: 61  KMVIGSRPPGCENKCKSCRPCMAAAVVPAHRKKWFKAF--VPSSGVEDDSYYLLSWKCRC 120
           KMVIGSRPPGC+NKC +CRPCMAAAVVP HR K  KAF    SS  E+DSYYLLSWKCRC
Sbjct: 67  KMVIGSRPPGCQNKCMNCRPCMAAAVVPVHRMKG-KAFQSFSSSREEEDSYYLLSWKCRC 122

Query: 121 GNKIYQP 126
           GNKIYQP
Sbjct: 127 GNKIYQP 122

[Close]

BLAST of Carg23142 vs. NCBI nr
Match: KAA0058756.1 (EPIDERMAL PATTERNING FACTOR-like protein 4 [Cucumis melo var. makuwa] >TYK10550.1 EPIDERMAL PATTERNING FACTOR-like protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 1.4e-22
Identity = 71/127 (55.91%), Postives = 82/127 (64.57%), Query Frame = 0


Query: 1   MSLPSSFKLPLLLFFFFFFFFLTFLPSKSGLFWPRSGGGGKETGNLEKGERESYVVDEQK 60
           +SL +S KL L L  FF F      P+  GL   RS   G+  G   K + +   + E +
Sbjct: 7   ISLSTSLKLALTLAAFFSF----LPPTSVGLVLSRS---GRSEG---KADNDEMKILENQ 66

Query: 61  KMVIGSRPPGCENKCKSCRPCMAAAVVPAHRKKWFKAF--VPSSGVEDDSYYLLSWKCRC 120
           KMVIGSRPPGC NKC +CRPCMAAAVVP HR K  KAF    SS  E+DSYYLLSWKC+C
Sbjct: 67  KMVIGSRPPGCRNKCMNCRPCMAAAVVPVHRMKG-KAFQSFSSSREEEDSYYLLSWKCQC 122

Query: 121 GNKIYQP 126
           GNKIYQP
Sbjct: 127 GNKIYQP 122

[Close]

BLAST of Carg23142 vs. NCBI nr
Match: XP_008461115.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 4 [Cucumis melo])

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-22
Identity = 71/127 (55.91%), Postives = 82/127 (64.57%), Query Frame = 0


Query: 1   MSLPSSFKLPLLLFFFFFFFFLTFLPSKSGLFWPRSGGGGKETGNLEKGERESYVVDEQK 60
           +SL +S KL L L  FF F      P+  GL   RS   G+  G  +  E +     E +
Sbjct: 7   ISLSTSLKLALTLAAFFSF----LPPTSVGLVLSRS---GRSEGKADNDEMKFL---EDQ 66

Query: 61  KMVIGSRPPGCENKCKSCRPCMAAAVVPAHRKKWFKAF--VPSSGVEDDSYYLLSWKCRC 120
           KMVIGSRPPGC+NKC +CRPCMAAAVVP HR K  KAF    SS  E+DSYYLLSWKC+C
Sbjct: 67  KMVIGSRPPGCQNKCMNCRPCMAAAVVPVHRMKG-KAFQSFSSSREEEDSYYLLSWKCQC 122

Query: 121 GNKIYQP 126
           GNKIYQP
Sbjct: 127 GNKIYQP 122

[Close]

BLAST of Carg23142 vs. ExPASy Swiss-Prot
Match: Q9T068 (EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EPFL2 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.3e-06
Identity = 36/119 (30.25%), Postives = 50/119 (42.02%), Query Frame = 0


Query: 21  FLTFLPSKSGLFWPRSGGGGKETGNLEKGERESYVVDEQKKMVIGSRPPGCEN-KCKSCR 80
           FL  L   +   +     G  E  ++E  +     V    + +IGSRPP CE  +C+SC 
Sbjct: 10  FLLILLILNSTHFSLMANGRPEPDSVEFTKSGDQDVKMMMRGLIGSRPPRCERVRCRSCG 69

Query: 81  PCMAAAVVPAHRKKWFKAFVPSS-------------GVEDDSYYLLSWKCRCGNKIYQP 126
            C A  V    + K       SS             G +  +Y  +SWKC+CGN IY P
Sbjct: 70  HCEAIQVPTNPQTKLHSPLTTSSSSSSETIHLDYTRGDDSTNYKPMSWKCKCGNSIYNP 128

[Close]

BLAST of Carg23142 vs. ExPASy Swiss-Prot
Match: Q9LFT5 (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EPFL1 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 9.7e-06
Identity = 25/80 (31.25%), Postives = 33/80 (41.25%), Query Frame = 0


Query: 59  QKKMVIGSRPPGCENKCKSCRPCMAAAVVPAHRKKWFKAFVPSSG-------------VE 118
           + K  +GS PP C N+C +C PCMA  V     +  F    P SG              +
Sbjct: 43  EDKARLGSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQ 102

Query: 119 DDSYYLLSWKCRCGNKIYQP 126
             +Y  + WKC C    Y P
Sbjct: 103 YSNYKPMGWKCHCNGHFYNP 122

[Close]

BLAST of Carg23142 vs. ExPASy Swiss-Prot
Match: Q9LUH9 (EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EPFL5 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 9.7e-06
Identity = 34/117 (29.06%), Postives = 52/117 (44.44%), Query Frame = 0


Query: 9   LPLLLFFFFFFFFLTFLPSKSGLFWPRSGGGGKETGNLEKGERESYVVDEQKKMVIGSRP 68
           LP L+ + F  FF +   S +      SGG G+    + +      +VD+++    GS P
Sbjct: 5   LPTLIVYAFLLFFSS---SSAASLQRPSGGLGQGKKEIARSGLPGQIVDQKRLGGPGSVP 64

Query: 69  PGCENKCKSCRPCMAAAVVPAHRKKWFKAFVPSSGVEDDSYYLLSWKCRCGNKIYQP 126
           P C  KC  C PC A  V            +    +    YY  +W+C+CGNK++ P
Sbjct: 65  PMCRLKCGKCEPCKAVHVP-----------IQPGLIMPLEYYPEAWRCKCGNKLFMP 107

[Close]

BLAST of Carg23142 vs. ExPASy Swiss-Prot
Match: P43212 (Polygalacturonase OS=Cryptomeria japonica OX=3369 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 9.7e-06
Identity = 29/85 (34.12%), Postives = 36/85 (42.35%), Query Frame = 0


Query: 41  KETGNLEKGERESYVVDEQKKMVIGSRPPGCENKCKSCRPCMAAAVVPAHRKKWFKAFVP 100
           K  G  +KG R         ++++GSRPP C NKC  C PC A  V+  HR         
Sbjct: 451 KNMGAYDKGNR--------TRILLGSRPPNCTNKCHGCSPCKAKLVI-VHR--------- 510

Query: 101 SSGVEDDSYYLLSWKCRCGNKIYQP 126
              +    YY   W C    KIY P
Sbjct: 511 ---IMPQEYYPQRWMCSRHGKIYHP 514

[Close]

BLAST of Carg23142 vs. ExPASy Swiss-Prot
Match: Q1G3V9 (EPIDERMAL PATTERNING FACTOR-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=EPFL8 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.7e-05
Identity = 24/70 (34.29%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 60  KKMVIGSRPPGCENKCKSCRPCMAAA--VVPAHRKKWFKAFVPSSGVEDDS--YYLLSWK 119
           K+ V+GS PP C  KC++C+PC+     +  AH              +DDS  YY + W 
Sbjct: 42  KESVMGSEPPVCATKCRNCKPCLPYLFDIRGAHDD------------DDDSEPYYPVKWI 99

Query: 120 CRCGNKIYQP 126
           CRC +++++P
Sbjct: 102 CRCRDRVFEP 99

[Close]

BLAST of Carg23142 vs. ExPASy TrEMBL
Match: A0A0A0K6C2 (Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_7G432570 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 73/127 (57.48%), Postives = 83/127 (65.35%), Query Frame = 0


Query: 1   MSLPSSFKLPLLLFFFFFFFFLTFLPSKSGLFWPRSGGGGKETGNLEKGERESYVVDEQK 60
           +SL +S KL L L  FF F      P+  GL   RS  G  E G  E  E ++     ++
Sbjct: 5   ISLSTSLKLALTLAAFFSF----LPPTSVGLVLSRS--GRSELGKAENDEMKNL----EE 64

Query: 61  KMVIGSRPPGCENKCKSCRPCMAAAVVPAHRKKWFKAF--VPSSGVEDDSYYLLSWKCRC 120
           KMVIGSRPPGC+NKC +CRPCMAAAVVP HR K  KAF    SS  E+DSYYLLSWKCRC
Sbjct: 65  KMVIGSRPPGCQNKCMNCRPCMAAAVVPVHRMKG-KAFQSFSSSREEEDSYYLLSWKCRC 120

Query: 121 GNKIYQP 126
           GNKIYQP
Sbjct: 125 GNKIYQP 120

[Close]

BLAST of Carg23142 vs. ExPASy TrEMBL
Match: A0A5D3CGR2 (Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002030 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 7.0e-23
Identity = 71/127 (55.91%), Postives = 82/127 (64.57%), Query Frame = 0


Query: 1   MSLPSSFKLPLLLFFFFFFFFLTFLPSKSGLFWPRSGGGGKETGNLEKGERESYVVDEQK 60
           +SL +S KL L L  FF F      P+  GL   RS   G+  G   K + +   + E +
Sbjct: 7   ISLSTSLKLALTLAAFFSF----LPPTSVGLVLSRS---GRSEG---KADNDEMKILENQ 66

Query: 61  KMVIGSRPPGCENKCKSCRPCMAAAVVPAHRKKWFKAF--VPSSGVEDDSYYLLSWKCRC 120
           KMVIGSRPPGC NKC +CRPCMAAAVVP HR K  KAF    SS  E+DSYYLLSWKC+C
Sbjct: 67  KMVIGSRPPGCRNKCMNCRPCMAAAVVPVHRMKG-KAFQSFSSSREEEDSYYLLSWKCQC 122

Query: 121 GNKIYQP 126
           GNKIYQP
Sbjct: 127 GNKIYQP 122

[Close]

BLAST of Carg23142 vs. ExPASy TrEMBL
Match: A0A1S3CDZ4 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103499797 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 9.1e-23
Identity = 71/127 (55.91%), Postives = 82/127 (64.57%), Query Frame = 0


Query: 1   MSLPSSFKLPLLLFFFFFFFFLTFLPSKSGLFWPRSGGGGKETGNLEKGERESYVVDEQK 60
           +SL +S KL L L  FF F      P+  GL   RS   G+  G  +  E +     E +
Sbjct: 7   ISLSTSLKLALTLAAFFSF----LPPTSVGLVLSRS---GRSEGKADNDEMKFL---EDQ 66

Query: 61  KMVIGSRPPGCENKCKSCRPCMAAAVVPAHRKKWFKAF--VPSSGVEDDSYYLLSWKCRC 120
           KMVIGSRPPGC+NKC +CRPCMAAAVVP HR K  KAF    SS  E+DSYYLLSWKC+C
Sbjct: 67  KMVIGSRPPGCQNKCMNCRPCMAAAVVPVHRMKG-KAFQSFSSSREEEDSYYLLSWKCQC 122

Query: 121 GNKIYQP 126
           GNKIYQP
Sbjct: 127 GNKIYQP 122

[Close]

BLAST of Carg23142 vs. ExPASy TrEMBL
Match: K7KZD9 (Epidermal patterning factor-like protein OS=Glycine max OX=3847 GN=102664177 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.5e-22
Identity = 63/118 (53.39%), Postives = 78/118 (66.10%), Query Frame = 0


Query: 8   KLPLLLFFFFFFFFLTFLPSKSGLFWPRSGGGGKETGNLEKGERESYVVDEQKKMVIGSR 67
           KLP+ +    F FFL+FLPSKSG             G++    RE     EQ+KMVIGS+
Sbjct: 15  KLPITV---LFVFFLSFLPSKSG-------------GSVMVETREGL---EQRKMVIGSK 74

Query: 68  PPGCENKCKSCRPCMAAAVVPAHRKKWFKAFVPSSGVEDDSYYLLSWKCRCGNKIYQP 126
           PP C NKCKSCRPCMA  VVP H+K+  K F  SS  +DD+YYLLSWKC+CG+K++QP
Sbjct: 75  PPACVNKCKSCRPCMATLVVPNHQKR--KGFKVSSRGDDDTYYLLSWKCKCGDKLFQP 111

[Close]

BLAST of Carg23142 vs. ExPASy TrEMBL
Match: K7L7X4 (Epidermal patterning factor-like protein OS=Glycine max OX=3847 GN=102659819 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.7e-21
Identity = 63/118 (53.39%), Postives = 76/118 (64.41%), Query Frame = 0


Query: 8   KLPLLLFFFFFFFFLTFLPSKSGLFWPRSGGGGKETGNLEKGERESYVVDEQKKMVIGSR 67
           KLP+ +    F FFL+FLPSKS        GG     +  +G  ES       KMVIGS+
Sbjct: 14  KLPITV---LFIFFLSFLPSKS--------GGSVMVESTREGLEES-------KMVIGSK 73

Query: 68  PPGCENKCKSCRPCMAAAVVPAHRKKWFKAFVPSSGVEDDSYYLLSWKCRCGNKIYQP 126
           PP C NKCKSCRPCMA  VVP H+K+  K F  SS  +DD+YYLLSWKC+CGNK++QP
Sbjct: 74  PPACVNKCKSCRPCMATLVVPNHQKR-KKGFKVSSRGDDDTYYLLSWKCKCGNKLFQP 112

[Close]

BLAST of Carg23142 vs. TAIR 10
Match: AT4G37810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1); Has 149 Blast hits to 149 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 2.4e-07
Identity = 36/119 (30.25%), Postives = 50/119 (42.02%), Query Frame = 0


Query: 21  FLTFLPSKSGLFWPRSGGGGKETGNLEKGERESYVVDEQKKMVIGSRPPGCEN-KCKSCR 80
           FL  L   +   +     G  E  ++E  +     V    + +IGSRPP CE  +C+SC 
Sbjct: 10  FLLILLILNSTHFSLMANGRPEPDSVEFTKSGDQDVKMMMRGLIGSRPPRCERVRCRSCG 69

Query: 81  PCMAAAVVPAHRKKWFKAFVPSS-------------GVEDDSYYLLSWKCRCGNKIYQP 126
            C A  V    + K       SS             G +  +Y  +SWKC+CGN IY P
Sbjct: 70  HCEAIQVPTNPQTKLHSPLTTSSSSSSETIHLDYTRGDDSTNYKPMSWKCKCGNSIYNP 128

[Close]

BLAST of Carg23142 vs. TAIR 10
Match: AT2G30370.1 (allergen-related )

HSP 1 Score: 51.6 bits (122), Expect = 5.3e-07
Identity = 24/62 (38.71%), Postives = 30/62 (48.39%), Query Frame = 0


Query: 64  IGSRPPGCENKCKSCRPCMAAAVVPAHRKKWFKAFVPSSGVEDDSYYLLSWKCRCGNKIY 123
           +GS PP C +KC  C PC      P H        VP        YY  +W+C+CGNK+Y
Sbjct: 180 LGSSPPRCSSKCGRCTPCK-----PVH------VPVPPGTPVTAEYYPEAWRCKCGNKLY 230

Query: 124 QP 126
            P
Sbjct: 240 MP 230

[Close]

BLAST of Carg23142 vs. TAIR 10
Match: AT3G22820.1 (allergen-related )

HSP 1 Score: 51.2 bits (121), Expect = 6.9e-07
Identity = 34/117 (29.06%), Postives = 52/117 (44.44%), Query Frame = 0


Query: 9   LPLLLFFFFFFFFLTFLPSKSGLFWPRSGGGGKETGNLEKGERESYVVDEQKKMVIGSRP 68
           LP L+ + F  FF +   S +      SGG G+    + +      +VD+++    GS P
Sbjct: 5   LPTLIVYAFLLFFSS---SSAASLQRPSGGLGQGKKEIARSGLPGQIVDQKRLGGPGSVP 64

Query: 69  PGCENKCKSCRPCMAAAVVPAHRKKWFKAFVPSSGVEDDSYYLLSWKCRCGNKIYQP 126
           P C  KC  C PC A  V            +    +    YY  +W+C+CGNK++ P
Sbjct: 65  PMCRLKCGKCEPCKAVHVP-----------IQPGLIMPLEYYPEAWRCKCGNKLFMP 107

[Close]

BLAST of Carg23142 vs. TAIR 10
Match: AT5G10310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 6.9e-07
Identity = 25/80 (31.25%), Postives = 33/80 (41.25%), Query Frame = 0


Query: 59  QKKMVIGSRPPGCENKCKSCRPCMAAAVVPAHRKKWFKAFVPSSG-------------VE 118
           + K  +GS PP C N+C +C PCMA  V     +  F    P SG              +
Sbjct: 43  EDKARLGSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQ 102

Query: 119 DDSYYLLSWKCRCGNKIYQP 126
             +Y  + WKC C    Y P
Sbjct: 103 YSNYKPMGWKCHCNGHFYNP 122

[Close]

BLAST of Carg23142 vs. TAIR 10
Match: AT1G80133.1 (unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 2.6e-06
Identity = 24/70 (34.29%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 60  KKMVIGSRPPGCENKCKSCRPCMAAA--VVPAHRKKWFKAFVPSSGVEDDS--YYLLSWK 119
           K+ V+GS PP C  KC++C+PC+     +  AH              +DDS  YY + W 
Sbjct: 42  KESVMGSEPPVCATKCRNCKPCLPYLFDIRGAHDD------------DDDSEPYYPVKWI 99

Query: 120 CRCGNKIYQP 126
           CRC +++++P
Sbjct: 102 CRCRDRVFEP 99

The following BLAST results are available for this feature:

BLAST of Carg23142 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025740.1	2.1e-66	100.00	Polygalacturonase, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6593393.1	4.4e-64	98.40	Polygalacturonase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAE8646441.1	2.2e-23	57.48	hypothetical protein Csa_015844 [Cucumis sativus]	[more]
KAA0058756.1	1.4e-22	55.91	EPIDERMAL PATTERNING FACTOR-like protein 4 [Cucumis melo var. makuwa] >TYK10550....	[more]
XP_008461115.1	1.9e-22	55.91	PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 4 [Cucumis melo]	[more]

BLAST of Carg23142 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T068	3.3e-06	30.25	EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q9LFT5	9.7e-06	31.25	EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q9LUH9	9.7e-06	29.06	EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
P43212	9.7e-06	34.12	Polygalacturonase OS=Cryptomeria japonica OX=3369 PE=1 SV=1	[more]
Q1G3V9	3.7e-05	34.29	EPIDERMAL PATTERNING FACTOR-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]

BLAST of Carg23142 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6C2	1.1e-23	57.48	Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_7G432...	[more]
A0A5D3CGR2	7.0e-23	55.91	Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3CDZ4	9.1e-23	55.91	Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103499797...	[more]
K7KZD9	3.5e-22	53.39	Epidermal patterning factor-like protein OS=Glycine max OX=3847 GN=102664177 PE=...	[more]
K7L7X4	1.7e-21	53.39	Epidermal patterning factor-like protein OS=Glycine max OX=3847 GN=102659819 PE=...	[more]

BLAST of Carg23142 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37810.1	2.4e-07	30.25	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G30370.1	5.3e-07	38.71	allergen-related	[more]
AT3G22820.1	6.9e-07	29.06	allergen-related	[more]
AT5G10310.1	6.9e-07	31.25	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G80133.1	2.6e-06	34.29	unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 prot...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF17181	EPF	coord: 63..125 e-value: 1.8E-20 score: 72.6
None	No IPR available	PANTHER	PTHR33109:SF57	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN	coord: 17..125
IPR039455	EPIDERMAL PATTERNING FACTOR-like protein	PANTHER	PTHR33109	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4	coord: 17..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23142-RA	Carg23142-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010052	guard cell differentiation
biological_process	GO:0010374	stomatal complex development
cellular_component	GO:0005576	extracellular region