Carg23112 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg23112
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RAB GTPase homolog A1C
Location	Carg_Chr07: 873524 .. 876226 (+)
RNA-Seq Expression	Carg23112
Synteny	Carg23112

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCGTACAGAGCTGAAGACGACTATGACTATCTCTTTAAGGTCGTCTTAATCGGCGATTCTGGCGTTGGCAAGTCCAATTTGCTTTCCCGCTTTACCAAAAACGAGTTCAGCCTCGAAACTAAGTCCACTATTGGCGTTGAGTTTGCTACCCGCAGTTTGAGTATTGATGGCAGGGTTATCAAGGCTCAGATTTGGGACACCGCTGGCCAAGAACGGTGATTTCTCTTTTCTCTCTGTTTATTTTAATTTCATGATCTGGGTCCTTGTCTTTTTTGGTGGAAATGTTGTGTCACATATGGGGCTCTCCTATGTTTTATTGTTTTTCTTTGTGCTTCTGTTGATTTCGAGATGTACTGCCTTCAAATTTAATTGATTCTTTAGCTTTGATTACTGCTAATTAATGTATTTGCTTGGTTTAGATCATGTTTGTTTATTTGTTTATTAGGTTCCATATTTTAGGTGTTGATTGTAATGGGGTACCAAACGGGTTTGGTGGATCTAAACTCAAAGACATTTCTTAGAACTTCGATTACTTTTATCTGCCGGATGTTGCCTTCCCTTGTCGTGTTTATCCCCATCAAAACCTCAATTCACCATATGGTTTGTGTTCTGTGTTGTTGTCCAATTTGCATCACTAGTTGACCCCCAAATGAACGACATCCTATCCTGCTGGATGCTACCTTCTCCATAAAACAGCACACAGAAAGGACCAATAGAGATAGCAAATCAAGCCTTCCAGCCGTATTTCAATATGGAAAGCTTTTTGGTTTGGTTATGCATATGCTTGAAACATGTCTTTATGGCTTAAACCAGGAGCCCCCTTCCCTTCAATTGTTACTCAGACATCTTATGTCTACCGATACGAATTGCACATTCAAATGCACCGAAAGTCCGTGAGTATGTTAGAAGACCGATCAGCGGTAACGTCAATTTTCGAGAAGCTTAATGTTTCTCTACTTTCCTCTTCCAAGTAATTGTCTTCCATTATTAGAAATTATGTTGGGTTATTCGACCTTCATTTTGGATGTCGTCGAGTGTTGGCTTATAAGTGTGACGAAAAACTCACCTCTTTGTAGCGTTTGGGGTTGAGAGAGCCGAGGAATATCAATTACTAGTATCAAAGTCAGGTTACAGGAAATCTGTTAAACTGGTTATGAAGGGTCGTGTTTATGTGAAGATCTAATTTGAAGTTTGTGCAATTCCTTATCGATGCGAAGATGCTAGACATGGAGTGTTGGTTTATAAAACATATGAGGCCGTTTTTGAGGTGGACTGAACCCATTCATACTAACATTGTGAGATTCCATATCGATTGGAGTGGGGACAAATGCCACCGACGACGCTGTGGCCCGAAGGAGGGTGGATTGTGAGATCCCACATCAGTTGGAGAGGGGAACGAAACATTGTTTATAAGGGTATAGAAACTTCTTCCTATTTTAAAAACCTTGAGGAAAACCATGGAAGAGAAAGCCCAAAAAAGACAATATCTGCTAGCCGTGAGTTTGAGGTTTTACAAACACCATCTTGGATATTCTGCAGGTATAGATATATTTTTAGTGTCTTGTTTATCTGAAAAAAATGGCACAAATTTCTCATTATATCATGGTGAGTGCAAGTCAAAGGGAATTCTTGGCGTGAGCAAGCTTTTGCTGTACTGAAAATGGTTAACCTGTGTGACAGGCTTTTAACTTAGCTTCACCTTAGAACTTCTGCTCACCTTATATTCCTACATATTCAGTCATCTGACTTCTCCAGCTCGTAGGTACCGAGCAATTACAAGTGCCTACTATCGAGGAGCAGTTGGTGCCCTGCTTGTGTACGACGTTACTCGACACGCTACCTATGAAAACGTTGAGAAGTGGTTGAAAGAGTTGAGAGATCATACAGATCCTAACATTGTAGTCATGCTGGTTGGCAACAAATCCGATCTTCGTCACCTTGTGGCAGTCCCAACCGAGGATGCAAAATCGTTTGCTGAAACAGAGTCCGTCTACTTCATGGAAACCTCCGCACTTGAATCCACAAACGTGGACAACGCATTCGTTGAAGTGCTTAAACAAATCTACCACTTGGTGAGCAAGAAGGCTATGGAAGCTAGCAATGATGCTGCTGCATCAGTTGTTCTAGCAAAAGGGGAGAGAATCGACATCAGCAAGGACGTGTCCGAGATAAAGAAAGGTGGTTGCTGCTCCAGCTAAACTTGCAATCTGAAGTTGGTGCAGCAGGATGTCACCTGGGGCACATGTATTTTATCTATCTATGGTATACACAGTGATTTTGTAAAACCTTTCCAGGGATGCACAGAATAGGGAAGGGATTTTGATTACTGATAAGTTAACTCGTGATGCCAAAAGTTGTGATATGCTTAAGCTGCTGGTAAACTTGGGAGTTGCAGTTGATACTCATTTGAGTTTGAGGGACTTTGTTCCTATGCTGAGTACATTATTGTCTCAAACACTCCAACATTTGTTTCATTGCTTGTATTGTGTGTAAACTACAGCTATAAGAAACATCTCTGGTATTTTCTTATTCACCTTCTTTGATATATGATATCGGATGTCACGGGTCGAATCTACGGTGGGTCTGAACTTTGACCCGGATTTCTTTGGATCCTCTTTTCCTTAAAGTCCCCTCCTTTTTAATTGAATTTAAGAAAATCATTTTCTCTTTTTTTTCTTTTTACTATCAAAACAAAAA

mRNA sequence

ATGTCTGCGTACAGAGCTGAAGACGACTATGACTATCTCTTTAAGGTCGTCTTAATCGGCGATTCTGGCGTTGGCAAGTCCAATTTGCTTTCCCGCTTTACCAAAAACGAGTTCAGCCTCGAAACTAAGTCCACTATTGGCGTTGAGTTTGCTACCCGCAGTTTGAGTATTGATGGCAGGGTTATCAAGGCTCAGATTTGGGACACCGCTGGCCAAGAACGGTACCGAGCAATTACAAGTGCCTACTATCGAGGAGCAGTTGGTGCCCTGCTTGTGTACGACGTTACTCGACACGCTACCTATGAAAACGTTGAGAAGTGGTTGAAAGAGTTGAGAGATCATACAGATCCTAACATTGTAGTCATGCTGGTTGGCAACAAATCCGATCTTCGTCACCTTGTGGCAGTCCCAACCGAGGATGCAAAATCGTTTGCTGAAACAGAGTCCGTCTACTTCATGGAAACCTCCGCACTTGAATCCACAAACGTGGACAACGCATTCGTTGAAGTGCTTAAACAAATCTACCACTTGGTGAGCAAGAAGGCTATGGAAGCTAGCAATGATGCTGCTGCATCAGTTGTTCTAGCAAAAGGGGAGAGAATCGACATCAGCAAGGACGTGTCCGAGATAAAGAAAGGTGGTTGCTGCTCCAGCTAAACTTGCAATCTGAAGTTGGTGCAGCAGGATGTCACCTGGGGCACATGTATTTTATCTATCTATGGTATACACAGTGATTTTGTAAAACCTTTCCAGGGATGCACAGAATAGGGAAGGGATTTTGATTACTGATAAGTTAACTCGTGATGCCAAAAGTTGTGATATGCTTAAGCTGCTGGTAAACTTGGGAGTTGCAGTTGATACTCATTTGAGTTTGAGGGACTTTGTTCCTATGCTGAGTACATTATTGTCTCAAACACTCCAACATTTGTTTCATTGCTTGTATTGTGTGTAAACTACAGCTATAAGAAACATCTCTGGTATTTTCTTATTCACCTTCTTTGATATATGATATCGGATGTCACGGGTCGAATCTACGGTGGGTCTGAACTTTGACCCGGATTTCTTTGGATCCTCTTTTCCTTAAAGTCCCCTCCTTTTTAATTGAATTTAAGAAAATCATTTTCTCTTTTTTTTCTTTTTACTATCAAAACAAAAA

Coding sequence (CDS)

ATGTCTGCGTACAGAGCTGAAGACGACTATGACTATCTCTTTAAGGTCGTCTTAATCGGCGATTCTGGCGTTGGCAAGTCCAATTTGCTTTCCCGCTTTACCAAAAACGAGTTCAGCCTCGAAACTAAGTCCACTATTGGCGTTGAGTTTGCTACCCGCAGTTTGAGTATTGATGGCAGGGTTATCAAGGCTCAGATTTGGGACACCGCTGGCCAAGAACGGTACCGAGCAATTACAAGTGCCTACTATCGAGGAGCAGTTGGTGCCCTGCTTGTGTACGACGTTACTCGACACGCTACCTATGAAAACGTTGAGAAGTGGTTGAAAGAGTTGAGAGATCATACAGATCCTAACATTGTAGTCATGCTGGTTGGCAACAAATCCGATCTTCGTCACCTTGTGGCAGTCCCAACCGAGGATGCAAAATCGTTTGCTGAAACAGAGTCCGTCTACTTCATGGAAACCTCCGCACTTGAATCCACAAACGTGGACAACGCATTCGTTGAAGTGCTTAAACAAATCTACCACTTGGTGAGCAAGAAGGCTATGGAAGCTAGCAATGATGCTGCTGCATCAGTTGTTCTAGCAAAAGGGGAGAGAATCGACATCAGCAAGGACGTGTCCGAGATAAAGAAAGGTGGTTGCTGCTCCAGCTAA

Protein sequence

MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGRVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKELRDHTDPNIVVMLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSKKAMEASNDAAASVVLAKGERIDISKDVSEIKKGGCCSS

Homology

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BLAST of Carg23112 vs. NCBI nr
Match: XP_023518462.1 (ras-related protein RABA1c-like [Cucurbita pepo subsp. pepo] >KAG7026514.1 Ras-related protein RABA1c, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 424.1 bits (1089), Expect = 7.3e-115
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR 60
           MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR
Sbjct: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKELRDHTDPNIV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKELRDHTDPNIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSK 180
           VMLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSK
Sbjct: 121 VMLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSK 180

Query: 181 KAMEASNDAAASVVLAKGERIDISKDVSEIKKGGCCSS 219
           KAMEASNDAAASVVLAKGERIDISKDVSEIKKGGCCSS
Sbjct: 181 KAMEASNDAAASVVLAKGERIDISKDVSEIKKGGCCSS 218

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BLAST of Carg23112 vs. NCBI nr
Match: KAG6594535.1 (Ras-related protein RABA1c, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 422.2 bits (1084), Expect = 2.8e-114
Identity = 217/218 (99.54%), Postives = 217/218 (99.54%), Query Frame = 0


Query: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR 60
           MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR
Sbjct: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKELRDHTDPNIV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKELRDHTDPN V
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKELRDHTDPNTV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSK 180
           VMLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSK
Sbjct: 121 VMLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSK 180

Query: 181 KAMEASNDAAASVVLAKGERIDISKDVSEIKKGGCCSS 219
           KAMEASNDAAASVVLAKGERIDISKDVSEIKKGGCCSS
Sbjct: 181 KAMEASNDAAASVVLAKGERIDISKDVSEIKKGGCCSS 218

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BLAST of Carg23112 vs. NCBI nr
Match: XP_023003676.1 (ras-related protein RABA1c-like [Cucurbita maxima])

HSP 1 Score: 421.8 bits (1083), Expect = 3.6e-114
Identity = 216/218 (99.08%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR 60
           MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR
Sbjct: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKELRDHTDPNIV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKEL+DHTDPNIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKELKDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSK 180
           VMLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSK
Sbjct: 121 VMLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSK 180

Query: 181 KAMEASNDAAASVVLAKGERIDISKDVSEIKKGGCCSS 219
           KAMEASNDAAASVVLAKGERIDISKDVS+IKKGGCCSS
Sbjct: 181 KAMEASNDAAASVVLAKGERIDISKDVSDIKKGGCCSS 218

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BLAST of Carg23112 vs. NCBI nr
Match: XP_022926955.1 (ras-related protein RABA1c-like [Cucurbita moschata])

HSP 1 Score: 418.7 bits (1075), Expect = 3.1e-113
Identity = 216/218 (99.08%), Postives = 216/218 (99.08%), Query Frame = 0


Query: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR 60
           MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR
Sbjct: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKELRDHTDPNIV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWL ELRDHTDPNIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLNELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSK 180
           VMLVGNKSDLRHLVAVPTEDAKSFAETESV FMETSALESTNVDNAFVEVLKQIYHLVSK
Sbjct: 121 VMLVGNKSDLRHLVAVPTEDAKSFAETESVCFMETSALESTNVDNAFVEVLKQIYHLVSK 180

Query: 181 KAMEASNDAAASVVLAKGERIDISKDVSEIKKGGCCSS 219
           KAMEASNDAAASVVLAKGERIDISKDVSEIKKGGCCSS
Sbjct: 181 KAMEASNDAAASVVLAKGERIDISKDVSEIKKGGCCSS 218

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BLAST of Carg23112 vs. NCBI nr
Match: XP_038892728.1 (ras-related protein RABA1c-like [Benincasa hispida])

HSP 1 Score: 402.1 bits (1032), Expect = 3.0e-108
Identity = 202/218 (92.66%), Postives = 214/218 (98.17%), Query Frame = 0


Query: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR 60
           MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLE+KSTIGVEFATRSL++DG+
Sbjct: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNLDGK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKELRDHTDPNIV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+TYENVEKWLKELRDHTDPNIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTYENVEKWLKELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSK 180
           VMLVGNKSDLRHLVAV TEDAKSFAETES+YFMETSALE+TNVDNAF EVL QIYH+VSK
Sbjct: 121 VMLVGNKSDLRHLVAVSTEDAKSFAETESLYFMETSALEATNVDNAFAEVLTQIYHIVSK 180

Query: 181 KAMEASNDAAASVVLAKGERIDISKDVSEIKKGGCCSS 219
           KAMEA++DAAAS VLAKGE+IDISKDVSE+KKGGCCSS
Sbjct: 181 KAMEANDDAAASAVLAKGEKIDISKDVSEVKKGGCCSS 218

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BLAST of Carg23112 vs. ExPASy Swiss-Prot
Match: Q9FK68 (Ras-related protein RABA1c OS=Arabidopsis thaliana OX=3702 GN=RABA1C PE=1 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 5.9e-99
Identity = 181/218 (83.03%), Postives = 205/218 (94.04%), Query Frame = 0


Query: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR 60
           M+ YRA+D+YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLE+KSTIGVEFATRSL++D +
Sbjct: 1   MAGYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKELRDHTDPNIV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+T+ENVE WLKELR+HTDPNIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSK 180
           VMLVGNKSDLRHLVAV TEDAKSFAE ES+YFMETSALE+TNV+NAF EVL QI+H+VSK
Sbjct: 121 VMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSK 180

Query: 181 KAMEASNDAAASVVLAKGERIDISKDVSEIKKGGCCSS 219
           KAMEA++++A   V +KG++IDI KDVS +KKGGCCS+
Sbjct: 181 KAMEAASESAN--VPSKGDKIDIGKDVSAVKKGGCCSN 216

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BLAST of Carg23112 vs. ExPASy Swiss-Prot
Match: Q9SN35 (Ras-related protein RABA1d OS=Arabidopsis thaliana OX=3702 GN=RABA1D PE=1 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 9.4e-97
Identity = 180/218 (82.57%), Postives = 201/218 (92.20%), Query Frame = 0


Query: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR 60
           M+ YRA+DDYDYLFKVVLIGDSGVGKSNLLSRFT+NEFSLE+KSTIGVEFATRSL+++ +
Sbjct: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVNEK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKELRDHTDPNIV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+T+ENVE+WL+ELRDHTDPNIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSK 180
           VMLVGNKSDLRHLVAV TEDAKSFAE ES+YFMETSALESTNV+NAF EVL QIYH+VSK
Sbjct: 121 VMLVGNKSDLRHLVAVQTEDAKSFAENESLYFMETSALESTNVENAFSEVLTQIYHVVSK 180

Query: 181 KAMEASNDAAASVVLAKGERIDISKDVSEIKKGGCCSS 219
           KAMEA  D+    V +KGE+ID+  DVS +KK GCCS+
Sbjct: 181 KAMEAGEDSGN--VPSKGEKIDV--DVSAVKKTGCCSN 214

[Close]

BLAST of Carg23112 vs. ExPASy Swiss-Prot
Match: P40393 (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica OX=39947 GN=RIC2 PE=2 SV=2)

HSP 1 Score: 353.6 bits (906), Expect = 1.6e-96
Identity = 175/216 (81.02%), Postives = 198/216 (91.67%), Query Frame = 0


Query: 2   SAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGRV 61
           + YRAEDDYDYLFKVVLIGDSGVGKSNLLSRFT+NEFSLE+KSTIGVEFATRSL +DG+V
Sbjct: 3   AGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKV 62

Query: 62  IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKELRDHTDPNIVV 121
           +KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+T+ENVE+WLKELRDHTDPNIVV
Sbjct: 63  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVV 122

Query: 122 MLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSKK 181
           MLVGNKSDLRHLVAV T++ K+FAE ES+YFMETSALESTNV+NAF EVL QIY +VSK+
Sbjct: 123 MLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKR 182

Query: 182 AMEASNDAAASVVLAKGERIDISKDVSEIKKGGCCS 218
           ++EA +DA +     KGE+I+I  DVS +KKGGCCS
Sbjct: 183 SVEAGDDAGSGP--GKGEKINIKDDVSAVKKGGCCS 216

[Close]

BLAST of Carg23112 vs. ExPASy Swiss-Prot
Match: Q39222 (Ras-related protein RABA1b OS=Arabidopsis thaliana OX=3702 GN=RABA1B PE=1 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 4.8e-93
Identity = 170/218 (77.98%), Postives = 195/218 (89.45%), Query Frame = 0


Query: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR 60
           M+ YR EDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEF+LE+KSTIGVEFATR+L +DG+
Sbjct: 1   MAGYRVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKELRDHTDPNIV 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR AT+ENV++WLKEL++HTDPNIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSK 180
           VMLVGNKSDLRHL+AVPTED KS+AE ES+ FMETSALE+TNV++AF EVL QIY + SK
Sbjct: 121 VMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSK 180

Query: 181 KAMEASNDAAASVVLAKGERIDISKDVSEIKKGGCCSS 219
           K +EA  D  ASV   KGE+I++  DVS +KK GCCS+
Sbjct: 181 KQVEAGEDGNASV--PKGEKIEVKNDVSALKKLGCCSN 216

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BLAST of Carg23112 vs. ExPASy Swiss-Prot
Match: Q40194 (Ras-related protein Rab11D OS=Lotus japonicus OX=34305 GN=RAB11D PE=2 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 3.1e-92
Identity = 164/218 (75.23%), Postives = 196/218 (89.91%), Query Frame = 0


Query: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR 60
           M  YR +D+YDYLFK+VLIGDSGVGKSNLLSRFTKNEF+LE+KSTIGVEFAT++L++D +
Sbjct: 1   MGGYRTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKELRDHTDPNIV 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR AT+EN  +WLKELRDHTDPNIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSK 180
           VML+GNKSDLRHLVAVPTED KSFAE ES+YFMETSALE+TNV+NAF EVL QIY +VSK
Sbjct: 121 VMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSK 180

Query: 181 KAMEASNDAAASVVLAKGERIDISKDVSEIKKGGCCSS 219
           +A+EA +  ++S + +KG+ I++ +D S +K+ GCCS+
Sbjct: 181 RAVEAGDSGSSSGLPSKGQTINVKEDSSVLKRFGCCST 218

[Close]

BLAST of Carg23112 vs. ExPASy TrEMBL
Match: A0A6J1KPX0 (ras-related protein RABA1c-like OS=Cucurbita maxima OX=3661 GN=LOC111497198 PE=4 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 1.8e-114
Identity = 216/218 (99.08%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR 60
           MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR
Sbjct: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKELRDHTDPNIV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKEL+DHTDPNIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKELKDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSK 180
           VMLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSK
Sbjct: 121 VMLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSK 180

Query: 181 KAMEASNDAAASVVLAKGERIDISKDVSEIKKGGCCSS 219
           KAMEASNDAAASVVLAKGERIDISKDVS+IKKGGCCSS
Sbjct: 181 KAMEASNDAAASVVLAKGERIDISKDVSDIKKGGCCSS 218

[Close]

BLAST of Carg23112 vs. ExPASy TrEMBL
Match: A0A6J1EMI6 (ras-related protein RABA1c-like OS=Cucurbita moschata OX=3662 GN=LOC111433916 PE=4 SV=1)

HSP 1 Score: 418.7 bits (1075), Expect = 1.5e-113
Identity = 216/218 (99.08%), Postives = 216/218 (99.08%), Query Frame = 0


Query: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR 60
           MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR
Sbjct: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKELRDHTDPNIV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWL ELRDHTDPNIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLNELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSK 180
           VMLVGNKSDLRHLVAVPTEDAKSFAETESV FMETSALESTNVDNAFVEVLKQIYHLVSK
Sbjct: 121 VMLVGNKSDLRHLVAVPTEDAKSFAETESVCFMETSALESTNVDNAFVEVLKQIYHLVSK 180

Query: 181 KAMEASNDAAASVVLAKGERIDISKDVSEIKKGGCCSS 219
           KAMEASNDAAASVVLAKGERIDISKDVSEIKKGGCCSS
Sbjct: 181 KAMEASNDAAASVVLAKGERIDISKDVSEIKKGGCCSS 218

[Close]

BLAST of Carg23112 vs. ExPASy TrEMBL
Match: A0A5D3CP64 (Ras-related protein RABA1c OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008350 PE=4 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 7.2e-108
Identity = 200/218 (91.74%), Postives = 213/218 (97.71%), Query Frame = 0


Query: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR 60
           MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLE+KSTIGVEFATRSL++DG+
Sbjct: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNLDGK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKELRDHTDPNIV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+TYENVEKWLKELRDHTDPNIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTYENVEKWLKELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSK 180
           VMLVGNKSDLRHLVAV TEDAKSFAETES+YFMETSALE+TNVDNAF EVL QIYH+VSK
Sbjct: 121 VMLVGNKSDLRHLVAVSTEDAKSFAETESLYFMETSALEATNVDNAFAEVLTQIYHIVSK 180

Query: 181 KAMEASNDAAASVVLAKGERIDISKDVSEIKKGGCCSS 219
           KAME ++DAAAS V+AKGE+IDISKDVSE+KKGGCCSS
Sbjct: 181 KAMETNDDAAASAVIAKGEKIDISKDVSEVKKGGCCSS 218

[Close]

BLAST of Carg23112 vs. ExPASy TrEMBL
Match: E5GC30 (GTP-binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 7.2e-108
Identity = 200/218 (91.74%), Postives = 213/218 (97.71%), Query Frame = 0


Query: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR 60
           MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLE+KSTIGVEFATRSL++DG+
Sbjct: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNLDGK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKELRDHTDPNIV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+TYENVEKWLKELRDHTDPNIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTYENVEKWLKELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSK 180
           VMLVGNKSDLRHLVAV TEDAKSFAETES+YFMETSALE+TNVDNAF EVL QIYH+VSK
Sbjct: 121 VMLVGNKSDLRHLVAVSTEDAKSFAETESLYFMETSALEATNVDNAFAEVLTQIYHIVSK 180

Query: 181 KAMEASNDAAASVVLAKGERIDISKDVSEIKKGGCCSS 219
           KAME ++DAAAS V+AKGE+IDISKDVSE+KKGGCCSS
Sbjct: 181 KAMETNDDAAASAVIAKGEKIDISKDVSEVKKGGCCSS 218

[Close]

BLAST of Carg23112 vs. ExPASy TrEMBL
Match: A0A0A0KNM1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519720 PE=4 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 7.2e-108
Identity = 200/218 (91.74%), Postives = 213/218 (97.71%), Query Frame = 0


Query: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR 60
           MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLE+KSTIGVEFATRSL++DG+
Sbjct: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNLDGK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKELRDHTDPNIV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+TYENVEKWLKELRDHTDPNIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTYENVEKWLKELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSK 180
           VMLVGNKSDLRHLVAV TEDAKSFAETES+YFMETSALE+TNVDNAF EVL QIYH+VSK
Sbjct: 121 VMLVGNKSDLRHLVAVSTEDAKSFAETESLYFMETSALEATNVDNAFAEVLTQIYHIVSK 180

Query: 181 KAMEASNDAAASVVLAKGERIDISKDVSEIKKGGCCSS 219
           KAME ++DAAAS V+AKGE+IDISKDVSE+KKGGCCSS
Sbjct: 181 KAMETNDDAAASAVIAKGEKIDISKDVSEVKKGGCCSS 218

[Close]

BLAST of Carg23112 vs. TAIR 10
Match: AT5G45750.1 (RAB GTPase homolog A1C )

HSP 1 Score: 361.7 bits (927), Expect = 4.2e-100
Identity = 181/218 (83.03%), Postives = 205/218 (94.04%), Query Frame = 0


Query: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR 60
           M+ YRA+D+YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLE+KSTIGVEFATRSL++D +
Sbjct: 1   MAGYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKELRDHTDPNIV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+T+ENVE WLKELR+HTDPNIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSK 180
           VMLVGNKSDLRHLVAV TEDAKSFAE ES+YFMETSALE+TNV+NAF EVL QI+H+VSK
Sbjct: 121 VMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSK 180

Query: 181 KAMEASNDAAASVVLAKGERIDISKDVSEIKKGGCCSS 219
           KAMEA++++A   V +KG++IDI KDVS +KKGGCCS+
Sbjct: 181 KAMEAASESAN--VPSKGDKIDIGKDVSAVKKGGCCSN 216

[Close]

BLAST of Carg23112 vs. TAIR 10
Match: AT4G18800.1 (RAB GTPase homolog A1D )

HSP 1 Score: 354.4 bits (908), Expect = 6.7e-98
Identity = 180/218 (82.57%), Postives = 201/218 (92.20%), Query Frame = 0


Query: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR 60
           M+ YRA+DDYDYLFKVVLIGDSGVGKSNLLSRFT+NEFSLE+KSTIGVEFATRSL+++ +
Sbjct: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVNEK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKELRDHTDPNIV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+T+ENVE+WL+ELRDHTDPNIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSK 180
           VMLVGNKSDLRHLVAV TEDAKSFAE ES+YFMETSALESTNV+NAF EVL QIYH+VSK
Sbjct: 121 VMLVGNKSDLRHLVAVQTEDAKSFAENESLYFMETSALESTNVENAFSEVLTQIYHVVSK 180

Query: 181 KAMEASNDAAASVVLAKGERIDISKDVSEIKKGGCCSS 219
           KAMEA  D+    V +KGE+ID+  DVS +KK GCCS+
Sbjct: 181 KAMEAGEDSGN--VPSKGEKIDV--DVSAVKKTGCCSN 214

[Close]

BLAST of Carg23112 vs. TAIR 10
Match: AT1G16920.1 (RAB GTPase homolog A1B )

HSP 1 Score: 342.0 bits (876), Expect = 3.4e-94
Identity = 170/218 (77.98%), Postives = 195/218 (89.45%), Query Frame = 0


Query: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR 60
           M+ YR EDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEF+LE+KSTIGVEFATR+L +DG+
Sbjct: 1   MAGYRVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKELRDHTDPNIV 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR AT+ENV++WLKEL++HTDPNIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSK 180
           VMLVGNKSDLRHL+AVPTED KS+AE ES+ FMETSALE+TNV++AF EVL QIY + SK
Sbjct: 121 VMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSK 180

Query: 181 KAMEASNDAAASVVLAKGERIDISKDVSEIKKGGCCSS 219
           K +EA  D  ASV   KGE+I++  DVS +KK GCCS+
Sbjct: 181 KQVEAGEDGNASV--PKGEKIEVKNDVSALKKLGCCSN 216

[Close]

BLAST of Carg23112 vs. TAIR 10
Match: AT5G60860.1 (RAB GTPase homolog A1F )

HSP 1 Score: 330.5 bits (846), Expect = 1.0e-90
Identity = 165/220 (75.00%), Postives = 193/220 (87.73%), Query Frame = 0


Query: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR 60
           M+AYRA+D+YDYLFKVVLIGDSGVGKSNLLSRFT+NEFSLE+KSTIGVEFATRS+ +D +
Sbjct: 1   MAAYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKELRDHTDPNIV 120
           ++KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH T+ENVE+WLKELRDHTD NIV
Sbjct: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSK 180
           +M VGNK+DLRHL AV TEDAK+FAE E+ +FMETSALES NV+NAF EVL QIY +VS+
Sbjct: 121 IMFVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLSQIYRVVSR 180

Query: 181 KAMEASNDAAASVVLAKGERIDISK--DVSEIKKGGCCSS 219
           KA++  +D AA   L KG+ I++    DVS +KK GCCS+
Sbjct: 181 KALDIGDDPAA---LPKGQTINVGSKDDVSAVKKVGCCSN 217

[Close]

BLAST of Carg23112 vs. TAIR 10
Match: AT3G15060.1 (RAB GTPase homolog A1G )

HSP 1 Score: 327.8 bits (839), Expect = 6.7e-90
Identity = 163/220 (74.09%), Postives = 192/220 (87.27%), Query Frame = 0


Query: 1   MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLETKSTIGVEFATRSLSIDGR 60
           M+AYRA+DDYD+L+KVVLIGDSGVGKSNLLSRFT+NEFSLE+KSTIGVEFATRS+ +D +
Sbjct: 1   MAAYRADDDYDFLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDEK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATYENVEKWLKELRDHTDPNIV 120
           ++KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH T+ENVE+WLKELRDHT+ NIV
Sbjct: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTEANIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDAKSFAETESVYFMETSALESTNVDNAFVEVLKQIYHLVSK 180
           +MLVGNK+DLRHL AV TEDAK+FAE E+ +FMETSALE+ NV+NAF EVL QIY + SK
Sbjct: 121 IMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALEALNVENAFTEVLSQIYRVASK 180

Query: 181 KAMEASNDAAASVVLAKGERIDISK--DVSEIKKGGCCSS 219
           KA++  +D      L KG+ I++    DVSE+KK GCCSS
Sbjct: 181 KALDIGDD---HTTLPKGQSINVGSKDDVSEVKKVGCCSS 217

The following BLAST results are available for this feature:

BLAST of Carg23112 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023518462.1	7.3e-115	100.00	ras-related protein RABA1c-like [Cucurbita pepo subsp. pepo] >KAG7026514.1 Ras-r...	[more]
KAG6594535.1	2.8e-114	99.54	Ras-related protein RABA1c, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023003676.1	3.6e-114	99.08	ras-related protein RABA1c-like [Cucurbita maxima]	[more]
XP_022926955.1	3.1e-113	99.08	ras-related protein RABA1c-like [Cucurbita moschata]	[more]
XP_038892728.1	3.0e-108	92.66	ras-related protein RABA1c-like [Benincasa hispida]	[more]

BLAST of Carg23112 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FK68	5.9e-99	83.03	Ras-related protein RABA1c OS=Arabidopsis thaliana OX=3702 GN=RABA1C PE=1 SV=1	[more]
Q9SN35	9.4e-97	82.57	Ras-related protein RABA1d OS=Arabidopsis thaliana OX=3702 GN=RABA1D PE=1 SV=1	[more]
P40393	1.6e-96	81.02	Ras-related protein RIC2 OS=Oryza sativa subsp. japonica OX=39947 GN=RIC2 PE=2 S...	[more]
Q39222	4.8e-93	77.98	Ras-related protein RABA1b OS=Arabidopsis thaliana OX=3702 GN=RABA1B PE=1 SV=1	[more]
Q40194	3.1e-92	75.23	Ras-related protein Rab11D OS=Lotus japonicus OX=34305 GN=RAB11D PE=2 SV=1	[more]

BLAST of Carg23112 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KPX0	1.8e-114	99.08	ras-related protein RABA1c-like OS=Cucurbita maxima OX=3661 GN=LOC111497198 PE=4...	[more]
A0A6J1EMI6	1.5e-113	99.08	ras-related protein RABA1c-like OS=Cucurbita moschata OX=3662 GN=LOC111433916 PE...	[more]
A0A5D3CP64	7.2e-108	91.74	Ras-related protein RABA1c OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
E5GC30	7.2e-108	91.74	GTP-binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A0A0KNM1	7.2e-108	91.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519720 PE=4 SV=1	[more]

BLAST of Carg23112 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45750.1	4.2e-100	83.03	RAB GTPase homolog A1C	[more]
AT4G18800.1	6.7e-98	82.57	RAB GTPase homolog A1D	[more]
AT1G16920.1	3.4e-94	77.98	RAB GTPase homolog A1B	[more]
AT5G60860.1	1.0e-90	75.00	RAB GTPase homolog A1F	[more]
AT3G15060.1	6.7e-90	74.09	RAB GTPase homolog A1G	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 55..77 score: 53.02 coord: 152..174 score: 40.44 coord: 14..35 score: 55.22 coord: 117..130 score: 54.65 coord: 37..53 score: 36.07
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 14..177 e-value: 4.2E-110 score: 381.8
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 11..177 e-value: 2.3E-25 score: 100.3
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 19..217 e-value: 7.1E-6 score: 33.9
None	No IPR available	PANTHER	PTHR47979	DRAB11-RELATED	coord: 1..218
None	No IPR available	PANTHER	PTHR47979:SF27	RAS-RELATED PROTEIN RIC2	coord: 1..218
None	No IPR available	PROSITE	PS51420	RHO	coord: 7..186 score: 10.804775
None	No IPR available	PROSITE	PS51419	RAB	coord: 9..216 score: 35.616276
None	No IPR available	CDD	cd01868	Rab11_like	coord: 11..175 e-value: 1.19691E-125 score: 349.936
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 16..177 e-value: 6.7E-14 score: 57.6
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 15..175 e-value: 5.7E-61 score: 204.9
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 2..195 score: 16.153479
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 12..170 e-value: 8.7E-40 score: 134.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 6..216 e-value: 6.0E-72 score: 243.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 9..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23112-RA	Carg23112-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0005768	endosome
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding