Carg22944 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22944
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Encodes a protein of unknown function that is a marker for oxidative stress response.
Location	Carg_Chr02: 1757399 .. 1758267 (+)
RNA-Seq Expression	Carg22944
Synteny	Carg22944

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGTCTTCTTTGAACTTCCCCTCAAGGTTTTAAAACGTGTCCACTAGAGAGATGTTTCCACATCTTTACAACCAACCAATGTAGAATCTCACATAGCTTTTCTCGTTACTCGTGACTCTAGCTAATTTATTCCTTTTGTCTTCCTTTCAAACTAGGTTCAAAACCAATGGAACAACAGAAAGAAAAACCATCAGCGGCAGCAAACCCACCCATCCCTTCTTGTCGAAAGAAGAAAAATGAAGAAGCTACATTCTTGGAGGACTTGAAGGATCACATCGACGAGTTCATTCACGCATCGATGGACGAACACAAATCGTGCTTTAAGAAAACCATCAACAAGGTATATACTTCCAATTCCTTCACTGTGCATCTAAAAGAAGTAATCATGTTTGTGATACATGTGGTGGATGTGTTCATCTAATACTTCCAAACACTCATTTGATTGGGTACACAGATGTTCCGTATGTCTAAAGTTGTGGCAGATAAGAATACAGAGACAAGTGGAGTTGAGAGCTCTCTGCCTCTTCGAACAACAGTATCAGAATAAATTCTCTTTTTTCCTCTGTTCTAGGATACTCTCTCTCCATCTTCAACCAAATCCTTGTACTTTGGATCTTTTGTTTTGCTTTATTTCCACAGTTCATACCCATTTTTTACTTATTTTTCTTTTTTGATTCTTAAGTTCTTGTTTATTTCCTCAGGCGCACGTTTTTTCTTCGAGTTCAATCATTAAACTATCAACATTTGAAAGGGTAATAGGAAAGTGAAAATTTAGCTATTGCCTTCGAGATGATTCTATATCCTATTATACAAGTGTGAATTAGTGGTTTTCTTTTCTAAAATGCAAAAAATGTAGACTATAGGATTT

mRNA sequence

ATTGTCTTCTTTGAACTTCCCCTCAAGGTTTTAAAACGTGTCCACTAGAGAGATGTTTCCACATCTTTACAACCAACCAATGTAGAATCTCACATAGCTTTTCTCGTTACTCGTGACTCTAGCTAATTTATTCCTTTTGTCTTCCTTTCAAACTAGGTTCAAAACCAATGGAACAACAGAAAGAAAAACCATCAGCGGCAGCAAACCCACCCATCCCTTCTTGTCGAAAGAAGAAAAATGAAGAAGCTACATTCTTGGAGGACTTGAAGGATCACATCGACGAGTTCATTCACGCATCGATGGACGAACACAAATCGTGCTTTAAGAAAACCATCAACAAGATGTTCCGTATGTCTAAAGTTGTGGCAGATAAGAATACAGAGACAAGTGGAGTTGAGAGCTCTCTGCCTCTTCGAACAACAGTATCAGAATAAATTCTCTTTTTTCCTCTGTTCTAGGATACTCTCTCTCCATCTTCAACCAAATCCTTGTACTTTGGATCTTTTGTTTTGCTTTATTTCCACAGTTCATACCCATTTTTTACTTATTTTTCTTTTTTGATTCTTAAGTTCTTGTTTATTTCCTCAGGCGCACGTTTTTTCTTCGAGTTCAATCATTAAACTATCAACATTTGAAAGGGTAATAGGAAAGTGAAAATTTAGCTATTGCCTTCGAGATGATTCTATATCCTATTATACAAGTGTGAATTAGTGGTTTTCTTTTCTAAAATGCAAAAAATGTAGACTATAGGATTT

Coding sequence (CDS)

ATGGAACAACAGAAAGAAAAACCATCAGCGGCAGCAAACCCACCCATCCCTTCTTGTCGAAAGAAGAAAAATGAAGAAGCTACATTCTTGGAGGACTTGAAGGATCACATCGACGAGTTCATTCACGCATCGATGGACGAACACAAATCGTGCTTTAAGAAAACCATCAACAAGATGTTCCGTATGTCTAAAGTTGTGGCAGATAAGAATACAGAGACAAGTGGAGTTGAGAGCTCTCTGCCTCTTCGAACAACAGTATCAGAATAA

Protein sequence

MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMFRMSKVVADKNTETSGVESSLPLRTTVSE

Homology

[Close]

BLAST of Carg22944 vs. NCBI nr
Match: KAG7035086.1 (hypothetical protein SDJN02_01881 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172.6 bits (436), Expect = 1.6e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
          MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF
Sbjct: 1  MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADKNTETSGVESSLPLRTTVSE 89
          RMSKVVADKNTETSGVESSLPLRTTVSE
Sbjct: 61 RMSKVVADKNTETSGVESSLPLRTTVSE 88

[Close]

BLAST of Carg22944 vs. NCBI nr
Match: XP_023006871.1 (uncharacterized protein LOC111499535 [Cucurbita maxima] >XP_023006872.1 uncharacterized protein LOC111499535 [Cucurbita maxima] >XP_023533150.1 uncharacterized protein LOC111795127 [Cucurbita pepo subsp. pepo] >XP_023533151.1 uncharacterized protein LOC111795127 [Cucurbita pepo subsp. pepo] >XP_023533869.1 uncharacterized protein LOC111795589 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.0 bits (432), Expect = 4.5e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
          MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF
Sbjct: 1  MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADKNTETSGVESSLPLRTTVSE 89
          RMSKVVADKN+ETSGVESSLPLRTTVSE
Sbjct: 61 RMSKVVADKNSETSGVESSLPLRTTVSE 88

[Close]

BLAST of Carg22944 vs. NCBI nr
Match: KAG6605077.1 (Epoxide hydrolase 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 171.0 bits (432), Expect = 4.5e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1   MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
           MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF
Sbjct: 279 MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 338

Query: 61  RMSKVVADKNTETSGVESSLPLRTTVSE 89
           RMSKVVADKN+ETSGVESSLPLRTTVSE
Sbjct: 339 RMSKVVADKNSETSGVESSLPLRTTVSE 366

[Close]

BLAST of Carg22944 vs. NCBI nr
Match: XP_022946978.1 (uncharacterized protein LOC111450996 [Cucurbita moschata])

HSP 1 Score: 167.9 bits (424), Expect = 3.8e-38
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
          MEQQKEKPSAAANPPI SCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF
Sbjct: 1  MEQQKEKPSAAANPPITSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADKNTETSGVESSLPLRTTVSE 89
          RMSKVVADKN+ETSGVESSLPLRTTVSE
Sbjct: 61 RMSKVVADKNSETSGVESSLPLRTTVSE 88

[Close]

BLAST of Carg22944 vs. NCBI nr
Match: XP_008460939.1 (PREDICTED: uncharacterized protein LOC103499674 [Cucumis melo])

HSP 1 Score: 167.2 bits (422), Expect = 6.5e-38
Identity = 84/88 (95.45%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
          MEQQKEKPS AANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF
Sbjct: 1  MEQQKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADKNTETSGVESSLPLRTTVSE 89
          RMSKVVAD+N+ET+GVESSLPLRTTVSE
Sbjct: 61 RMSKVVADRNSETNGVESSLPLRTTVSE 88

[Close]

BLAST of Carg22944 vs. ExPASy TrEMBL
Match: A0A6J1KX05 (uncharacterized protein LOC111499535 OS=Cucurbita maxima OX=3661 GN=LOC111499535 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.2e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
          MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF
Sbjct: 1  MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADKNTETSGVESSLPLRTTVSE 89
          RMSKVVADKN+ETSGVESSLPLRTTVSE
Sbjct: 61 RMSKVVADKNSETSGVESSLPLRTTVSE 88

[Close]

BLAST of Carg22944 vs. ExPASy TrEMBL
Match: A0A6J1G5B9 (uncharacterized protein LOC111450996 OS=Cucurbita moschata OX=3662 GN=LOC111450996 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.9e-38
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
          MEQQKEKPSAAANPPI SCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF
Sbjct: 1  MEQQKEKPSAAANPPITSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADKNTETSGVESSLPLRTTVSE 89
          RMSKVVADKN+ETSGVESSLPLRTTVSE
Sbjct: 61 RMSKVVADKNSETSGVESSLPLRTTVSE 88

[Close]

BLAST of Carg22944 vs. ExPASy TrEMBL
Match: A0A5A7TRS7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G00290 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.2e-38
Identity = 84/88 (95.45%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1   MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
           MEQQKEKPS AANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF
Sbjct: 53  MEQQKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 112

Query: 61  RMSKVVADKNTETSGVESSLPLRTTVSE 89
           RMSKVVAD+N+ET+GVESSLPLRTTVSE
Sbjct: 113 RMSKVVADRNSETNGVESSLPLRTTVSE 140

[Close]

BLAST of Carg22944 vs. ExPASy TrEMBL
Match: A0A1S3CDL9 (uncharacterized protein LOC103499674 OS=Cucumis melo OX=3656 GN=LOC103499674 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.2e-38
Identity = 84/88 (95.45%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
          MEQQKEKPS AANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF
Sbjct: 1  MEQQKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADKNTETSGVESSLPLRTTVSE 89
          RMSKVVAD+N+ET+GVESSLPLRTTVSE
Sbjct: 61 RMSKVVADRNSETNGVESSLPLRTTVSE 88

[Close]

BLAST of Carg22944 vs. ExPASy TrEMBL
Match: A0A6J1J859 (uncharacterized protein LOC111484328 OS=Cucurbita maxima OX=3661 GN=LOC111484328 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.1e-37
Identity = 82/88 (93.18%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
          ME+QK+KPSAAANPPIPSCRKKKNE+ TFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF
Sbjct: 1  MEKQKDKPSAAANPPIPSCRKKKNEDGTFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADKNTETSGVESSLPLRTTVSE 89
          RMSKVVAD+N+ETSGVESSLPLRTTVSE
Sbjct: 61 RMSKVVADRNSETSGVESSLPLRTTVSE 88

[Close]

BLAST of Carg22944 vs. TAIR 10
Match: AT4G39235.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 105.5 bits (262), Expect = 2.2e-23
Identity = 53/76 (69.74%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 14 PPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMFRMSKVVADKN-TE 73
          P + SCRKK  ++ATF ED+KDHID+FIHASMDEHKSCF+KTI KMF +SK VA+K   E
Sbjct: 11 PAMTSCRKKVKDDATFFEDVKDHIDDFIHASMDEHKSCFQKTIKKMFGLSKAVAEKQAVE 70

Query: 74 TSGVESSLPLRTTVSE 89
            GVES LPL+TTVSE
Sbjct: 71 AKGVESQLPLQTTVSE 86

[Close]

BLAST of Carg22944 vs. TAIR 10
Match: AT3G05570.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39235.1); Has 73 Blast hits to 73 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 99.4 bits (246), Expect = 1.6e-21
Identity = 53/90 (58.89%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 1  MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
          ME QK +      P   SCRKK  ++A FLED+KDHID+FI+ASMD+HK+CF KTI KMF
Sbjct: 1  METQKTQAENPPKPATSSCRKKTKDDANFLEDVKDHIDDFINASMDDHKNCFNKTIKKMF 60

Query: 61 RMSKVVADKNTETS--GVESSLPLRTTVSE 89
           +SK VADK    +  GVES LPL+TTVS+
Sbjct: 61 GLSKAVADKQQSEAKGGVESYLPLQTTVSD 90

[Close]

BLAST of Carg22944 vs. TAIR 10
Match: AT2G21640.1 (Encodes a protein of unknown function that is a marker for oxidative stress response. )

HSP 1 Score: 73.9 bits (180), Expect = 7.0e-14
Identity = 44/86 (51.16%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 13  NPPIP-----SCRKK-KNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKM---FRMS 72
           NPP P     SCRK+ K++ ATF  +LKDH+DEFIHASMDEHK+CFK T++K+   F  +
Sbjct: 19  NPPKPQVPASSCRKRVKDDNATFFANLKDHMDEFIHASMDEHKTCFKNTMDKIFGSFSKA 78

Query: 73  KVVADKNTETSG-VESSLPLRTTVSE 89
           + VA+K  E    VE   PL+T V++
Sbjct: 79  EAVAEKQIEAKEVVEIHSPLQTAVTK 104

The following BLAST results are available for this feature:

BLAST of Carg22944 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035086.1	1.6e-39	100.00	hypothetical protein SDJN02_01881 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023006871.1	4.5e-39	98.86	uncharacterized protein LOC111499535 [Cucurbita maxima] >XP_023006872.1 uncharac...	[more]
KAG6605077.1	4.5e-39	98.86	Epoxide hydrolase 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022946978.1	3.8e-38	97.73	uncharacterized protein LOC111450996 [Cucurbita moschata]	[more]
XP_008460939.1	6.5e-38	95.45	PREDICTED: uncharacterized protein LOC103499674 [Cucumis melo]	[more]

BLAST of Carg22944 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg22944 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KX05	2.2e-39	98.86	uncharacterized protein LOC111499535 OS=Cucurbita maxima OX=3661 GN=LOC111499535...	[more]
A0A6J1G5B9	1.9e-38	97.73	uncharacterized protein LOC111450996 OS=Cucurbita moschata OX=3662 GN=LOC1114509...	[more]
A0A5A7TRS7	3.2e-38	95.45	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3CDL9	3.2e-38	95.45	uncharacterized protein LOC103499674 OS=Cucumis melo OX=3656 GN=LOC103499674 PE=...	[more]
A0A6J1J859	2.1e-37	93.18	uncharacterized protein LOC111484328 OS=Cucurbita maxima OX=3661 GN=LOC111484328...	[more]

BLAST of Carg22944 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39235.1	2.2e-23	69.74	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G05570.1	1.6e-21	58.89	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G21640.1	7.0e-14	51.16	Encodes a protein of unknown function that is a marker for oxidative stress resp...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR33622:SF10	DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPF	coord: 3..88
None	No IPR available	PANTHER	PTHR33622	FAMILY NOT NAMED	coord: 3..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22944-RA	Carg22944-RA	mRNA