Carg22893 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22893
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Cytotoxic and regulatory T-cell molecule
Location	Carg_Chr11: 5320321 .. 5320983 (-)
RNA-Seq Expression	Carg22893
Synteny	Carg22893

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGCAATGGACGTGGTGGTCGCAACAGGGTAAGTCTTTTCCTAGTCTAGTTTCCCTGTTTCTGGACATTGGGGTTCGGAATTCCATAATCTTGAATTCTTTTGTCGTTGCGGCATTTTCTCGAACACCTTGTATGCCTCTGCTCTTGTTTTGATCTGCTCTGTTCTTGGGCTTGAAAATGGGGTTTGGTATACTCTTAATCCACTCTTTAATCACTTATTTCCCATTGCGGCATTTCTTCGAACACCTTGTTGTTGTAGTACTCTTATTTTGATGTGCATTGTTGTTGGCTTGTTCAGAACCCATATGGACCAGGGAGCGTCAATATCTACCGTAAATACTCTCCTAATTCCAAATCCAAACAGTTTTTGAGTAATCTTTTATGGTTGACTCGCTTGAATTAGTGGATATGAAATGGGTTAAAAAATTGACAGAATGCCCAAGTCGGTGCGCCACTCGATGCGGGAGGACACAGTACCACAAACCATGCATGTTCTTTTGCCAAAAATGCTGCAGAAAGTGCTTGTGCGTGCCGCCGGGTTACTATGGAAACAAAGGCGTTTGCCCTTGCTACAACAACTGGAAGACAAAGGAAGGAGGGCCCAAATGCCCTTAGAAAACACAACCCATTTCCATTTCCATCTCTTTTGTGCTCTTGA

mRNA sequence

ATGGCCGGCAATGGACGTGGTGGTCGCAACAGGAATGCCCAAGTCGGTGCGCCACTCGATGCGGGAGGACACAGTACCACAAACCATGCATGTTCTTTTGCCAAAAATGCTGCAGAAAGTGCTTGTGCGTGCCGCCGGGTTACTATGGAAACAAAGGCGTTTGCCCTTGCTACAACAACTGGAAGACAAAGGAAGGAGGGCCCAAATGCCCTTAGAAAACACAACCCATTTCCATTTCCATCTCTTTTGTGCTCTTGA

Coding sequence (CDS)

ATGGCCGGCAATGGACGTGGTGGTCGCAACAGGAATGCCCAAGTCGGTGCGCCACTCGATGCGGGAGGACACAGTACCACAAACCATGCATGTTCTTTTGCCAAAAATGCTGCAGAAAGTGCTTGTGCGTGCCGCCGGGTTACTATGGAAACAAAGGCGTTTGCCCTTGCTACAACAACTGGAAGACAAAGGAAGGAGGGCCCAAATGCCCTTAGAAAACACAACCCATTTCCATTTCCATCTCTTTTGTGCTCTTGA

Protein sequence

MAGNGRGGRNRNAQVGAPLDAGGHSTTNHACSFAKNAAESACACRRVTMETKAFALATTTGRQRKEGPNALRKHNPFPFPSLLCS

Homology

[Close]

BLAST of Carg22893 vs. NCBI nr
Match: XP_022933447.1 (uncharacterized protein LOC111440860 isoform X1 [Cucurbita moschata])

HSP 1 Score: 171.8 bits (434), Expect = 2.6e-39
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1   MAGNGRGGRNRNAQVGAPLDAGGHSTTNHACSFAKNAAESACACRRVTMETKAFALATTT 60
           MAGNGRGGRNRNAQVGAPLDAGGHSTTNHACSFAKNAAESACACRRVTMETKAFALATTT
Sbjct: 27  MAGNGRGGRNRNAQVGAPLDAGGHSTTNHACSFAKNAAESACACRRVTMETKAFALATTT 86

Query: 61  GRQRKEGPNALRKHNPFPFPSLLCS 86
           GRQRKEGPNALRKHNPFPFPSLLCS
Sbjct: 87  GRQRKEGPNALRKHNPFPFPSLLCS 111

[Close]

BLAST of Carg22893 vs. NCBI nr
Match: KAG7022220.1 (hypothetical protein SDJN02_15950, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171.8 bits (434), Expect = 2.6e-39
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MAGNGRGGRNRNAQVGAPLDAGGHSTTNHACSFAKNAAESACACRRVTMETKAFALATTT 60
          MAGNGRGGRNRNAQVGAPLDAGGHSTTNHACSFAKNAAESACACRRVTMETKAFALATTT
Sbjct: 1  MAGNGRGGRNRNAQVGAPLDAGGHSTTNHACSFAKNAAESACACRRVTMETKAFALATTT 60

Query: 61 GRQRKEGPNALRKHNPFPFPSLLCS 86
          GRQRKEGPNALRKHNPFPFPSLLCS
Sbjct: 61 GRQRKEGPNALRKHNPFPFPSLLCS 85

[Close]

BLAST of Carg22893 vs. NCBI nr
Match: KAG6580964.1 (hypothetical protein SDJN03_20966, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.8 bits (229), Expect = 1.5e-15
Identity = 48/67 (71.64%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 9   RNRNAQVGAPLDAGGHSTTNHACSFAKNAAESACACRRVTMETKAFALATTTGRQRKEGP 68
           R+ NAQ+GAPL AGGH+TTNHACS AK+AA SAC C   T ETK  ALATTTGR RKE P
Sbjct: 112 RSSNAQIGAPLGAGGHNTTNHACSSAKSAAGSACVCPLATTETKPCALATTTGRPRKEDP 171

Query: 69  NALRKHN 76
           NAL+K N
Sbjct: 172 NALKKTN 178

[Close]

BLAST of Carg22893 vs. NCBI nr
Match: KAG7017706.1 (hypothetical protein SDJN02_19572 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 88.6 bits (218), Expect = 2.9e-14
Identity = 56/111 (50.45%), Postives = 61/111 (54.95%), Query Frame = 0


Query: 1   MAGNGRGGRNR--------------------------------------NAQVGAPLDAG 60
           MAGNGRGGR+R                                      NAQ+GAPL AG
Sbjct: 25  MAGNGRGGRSRNPYGPGSVKIFRKYPPNSKSKQFMSHFCGSFGLDLSGFNAQIGAPLGAG 84

Query: 61  GHSTTNHACSFAKNAAESACACRRVTMETKAFALATTTGRQRKEGPNALRK 74
           GH+TTNHACS AK+AA SAC C   T ETK  ALATTTGR RKE PNAL+K
Sbjct: 85  GHNTTNHACSSAKSAAGSACVCPLATTETKPCALATTTGRPRKEDPNALKK 135

[Close]

BLAST of Carg22893 vs. NCBI nr
Match: KAG5536614.1 (hypothetical protein RHGRI_024138 [Rhododendron griersonianum])

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-07
Identity = 40/75 (53.33%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 11 RNAQVGAPLDAGGHSTTNHACSFAKNAAESACACRRVTMETKAFALATTTGRQRKEGPNA 70
          +NA   A  D   HST NHACS A N A+SAC     T  T+  ALATTTGR RKE PNA
Sbjct: 2  QNADRNAQGDVAKHSTRNHACSSATNVAQSACVFPMATTGTRVHALATTTGRPRKEAPNA 61

Query: 71 LRKHNPFPFPSLLCS 86
          LR  N   F S L +
Sbjct: 62 LRIPNNNIFYSSLAN 76

[Close]

BLAST of Carg22893 vs. ExPASy TrEMBL
Match: A0A6J1EZT1 (uncharacterized protein LOC111440860 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111440860 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.2e-39
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1   MAGNGRGGRNRNAQVGAPLDAGGHSTTNHACSFAKNAAESACACRRVTMETKAFALATTT 60
           MAGNGRGGRNRNAQVGAPLDAGGHSTTNHACSFAKNAAESACACRRVTMETKAFALATTT
Sbjct: 27  MAGNGRGGRNRNAQVGAPLDAGGHSTTNHACSFAKNAAESACACRRVTMETKAFALATTT 86

Query: 61  GRQRKEGPNALRKHNPFPFPSLLCS 86
           GRQRKEGPNALRKHNPFPFPSLLCS
Sbjct: 87  GRQRKEGPNALRKHNPFPFPSLLCS 111

[Close]

BLAST of Carg22893 vs. ExPASy TrEMBL
Match: A0A2P5F726 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_105740 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.6e-07
Identity = 37/60 (61.67%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 12 NAQVGAPLDAGGHSTTNHACSFAKNAAESACACRRVTMETKAFALATTTGRQRKEGPNAL 71
          NA+  A  DA  H+TTNHAC  AKNAA SA  C   TM TK  ALATTTGR R+E P+AL
Sbjct: 34 NARENAQGDAAKHNTTNHACFSAKNAATSAFVCLLATMATKLCALATTTGRPREEDPSAL 93

[Close]

BLAST of Carg22893 vs. ExPASy TrEMBL
Match: A0A2P5C8K0 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_174990 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.2e-07
Identity = 36/60 (60.00%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 12 NAQVGAPLDAGGHSTTNHACSFAKNAAESACACRRVTMETKAFALATTTGRQRKEGPNAL 71
          NA+  A  DA  H+TT+HAC  AKNAA SA  C   TM TK  ALATTTGR R+E P+AL
Sbjct: 34 NARENAQGDAAKHNTTSHACFSAKNAATSAFVCLLATMATKLCALATTTGRPREEDPSAL 93

[Close]

BLAST of Carg22893 vs. ExPASy TrEMBL
Match: A0A6A2ZRF0 (Putative transcription factor OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110783pilonHSYRG00037 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.2e-07
Identity = 36/64 (56.25%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 9  RNRNAQVGAPLDAGGHSTTNHACSFAKNAAESACACRRVTMETKAFALATTTGRQRKEGP 68
          R  NA   A  D    STTNHACS  +NAA  AC C +  M T  FAL TTTGR RKE P
Sbjct: 19 RLTNAHRSAQGDVARPSTTNHACSSVRNAAGLACVCHQGIMGTNKFALVTTTGRPRKEAP 78

Query: 69 NALR 73
          NAL+
Sbjct: 79 NALK 82

[Close]

BLAST of Carg22893 vs. ExPASy TrEMBL
Match: A0A6A2YCB8 (F-box protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111644pilonHSYRG00208 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.2e-07
Identity = 37/68 (54.41%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 9  RNRNAQVGAPLDAGGHSTTNHACSFAKNAAESACACRRVTMETKAFALATTTGRQRKEGP 68
          R  NA   A  D    STTNHACS  +NAA  AC C +    T  FALATTTGR RKE P
Sbjct: 19 RLTNAHRSAQGDVARPSTTNHACSSVRNAAGHACVCPQGITGTNKFALATTTGRPRKEAP 78

Query: 69 NALRKHNP 77
          NAL+   P
Sbjct: 79 NALKFSTP 86

The following BLAST results are available for this feature:

BLAST of Carg22893 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933447.1	2.6e-39	100.00	uncharacterized protein LOC111440860 isoform X1 [Cucurbita moschata]	[more]
KAG7022220.1	2.6e-39	100.00	hypothetical protein SDJN02_15950, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6580964.1	1.5e-15	71.64	hypothetical protein SDJN03_20966, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7017706.1	2.9e-14	50.45	hypothetical protein SDJN02_19572 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG5536614.1	1.5e-07	53.33	hypothetical protein RHGRI_024138 [Rhododendron griersonianum]	[more]

BLAST of Carg22893 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg22893 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EZT1	1.2e-39	100.00	uncharacterized protein LOC111440860 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A2P5F726	1.6e-07	61.67	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_105740 PE=4 SV...	[more]
A0A2P5C8K0	6.2e-07	60.00	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_174990 PE...	[more]
A0A6A2ZRF0	6.2e-07	56.25	Putative transcription factor OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0011078...	[more]
A0A6A2YCB8	6.2e-07	54.41	F-box protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111644pilonHSYRG00208...	[more]

BLAST of Carg22893 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22893-RA	Carg22893-RA	mRNA