Carg22845 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22845
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	50S ribosomal protein-like protein
Location	Carg_Chr15: 394652 .. 395134 (-)
RNA-Seq Expression	Carg22845
Synteny	Carg22845

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACCTTGCATAAATTCAAGCTCTTAGCCTCCCAATGTGCCGTCGCCGGTTGCCCTACTCAAAGCCCCACTGCTAGCCCCGTCTTTCACCTCCGCCGTCGCCGACGCAAAACCCTAAGAATGCTCCTCAATCGCGCCGATCGCCGCCGATTTCCCTACCAAGATAACTCCGCCGATCCTCAAGATGTCGACGACGACGATGACGACGACGACAATATGATTCCGGAGAAAAACGATAAGGAGGTCCGAGCCAGGCGGAAACTCAAGGATTTGTTCGTCTCGTCGCCGCCACTCGAGGATAAGGTTTCCGACAGGAGAATCGAAGAACAGGAAGCATTATTAACGACGGCCAACACCAGCGCCGCTGGAATCGGTACGCCCTCCATCACTCGCCGCTCTCTAAGGCCGATATCGGCGACATTTCGTTACAGATTTCTCCGGCGAGCTTGGCGGCCGGTGCTCGTCACCATTCCCGAATAG

mRNA sequence

ATGGCTACCTTGCATAAATTCAAGCTCTTAGCCTCCCAATGTGCCGTCGCCGGTTGCCCTACTCAAAGCCCCACTGCTAGCCCCGTCTTTCACCTCCGCCGTCGCCGACGCAAAACCCTAAGAATGCTCCTCAATCGCGCCGATCGCCGCCGATTTCCCTACCAAGATAACTCCGCCGATCCTCAAGATGTCGACGACGACGATGACGACGACGACAATATGATTCCGGAGAAAAACGATAAGGAGGTCCGAGCCAGGCGGAAACTCAAGGATTTGTTCGTCTCGTCGCCGCCACTCGAGGATAAGGTTTCCGACAGGAGAATCGAAGAACAGGAAGCATTATTAACGACGGCCAACACCAGCGCCGCTGGAATCGGTACGCCCTCCATCACTCGCCGCTCTCTAAGGCCGATATCGGCGACATTTCGTTACAGATTTCTCCGGCGAGCTTGGCGGCCGGTGCTCGTCACCATTCCCGAATAG

Coding sequence (CDS)

ATGGCTACCTTGCATAAATTCAAGCTCTTAGCCTCCCAATGTGCCGTCGCCGGTTGCCCTACTCAAAGCCCCACTGCTAGCCCCGTCTTTCACCTCCGCCGTCGCCGACGCAAAACCCTAAGAATGCTCCTCAATCGCGCCGATCGCCGCCGATTTCCCTACCAAGATAACTCCGCCGATCCTCAAGATGTCGACGACGACGATGACGACGACGACAATATGATTCCGGAGAAAAACGATAAGGAGGTCCGAGCCAGGCGGAAACTCAAGGATTTGTTCGTCTCGTCGCCGCCACTCGAGGATAAGGTTTCCGACAGGAGAATCGAAGAACAGGAAGCATTATTAACGACGGCCAACACCAGCGCCGCTGGAATCGGTACGCCCTCCATCACTCGCCGCTCTCTAAGGCCGATATCGGCGACATTTCGTTACAGATTTCTCCGGCGAGCTTGGCGGCCGGTGCTCGTCACCATTCCCGAATAG

Protein sequence

MATLHKFKLLASQCAVAGCPTQSPTASPVFHLRRRRRKTLRMLLNRADRRRFPYQDNSADPQDVDDDDDDDDNMIPEKNDKEVRARRKLKDLFVSSPPLEDKVSDRRIEEQEALLTTANTSAAGIGTPSITRRSLRPISATFRYRFLRRAWRPVLVTIPE

Homology

[Close]

BLAST of Carg22845 vs. NCBI nr
Match: XP_022939119.1 (uncharacterized protein LOC111445119 [Cucurbita moschata] >KAG7015924.1 hypothetical protein SDJN02_21028, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 307.4 bits (786), Expect = 7.4e-80
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MATLHKFKLLASQCAVAGCPTQSPTASPVFHLRRRRRKTLRMLLNRADRRRFPYQDNSAD 60
           MATLHKFKLLASQCAVAGCPTQSPTASPVFHLRRRRRKTLRMLLNRADRRRFPYQDNSAD
Sbjct: 1   MATLHKFKLLASQCAVAGCPTQSPTASPVFHLRRRRRKTLRMLLNRADRRRFPYQDNSAD 60

Query: 61  PQDVDDDDDDDDNMIPEKNDKEVRARRKLKDLFVSSPPLEDKVSDRRIEEQEALLTTANT 120
           PQDVDDDDDDDDNMIPEKNDKEVRARRKLKDLFVSSPPLEDKVSDRRIEEQEALLTTANT
Sbjct: 61  PQDVDDDDDDDDNMIPEKNDKEVRARRKLKDLFVSSPPLEDKVSDRRIEEQEALLTTANT 120

Query: 121 SAAGIGTPSITRRSLRPISATFRYRFLRRAWRPVLVTIPE 161
           SAAGIGTPSITRRSLRPISATFRYRFLRRAWRPVLVTIPE
Sbjct: 121 SAAGIGTPSITRRSLRPISATFRYRFLRRAWRPVLVTIPE 160

[Close]

BLAST of Carg22845 vs. NCBI nr
Match: XP_023551541.1 (uncharacterized protein LOC111809331 [Cucurbita pepo subsp. pepo] >KAG6578345.1 hypothetical protein SDJN03_22793, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 305.8 bits (782), Expect = 2.1e-79
Identity = 159/160 (99.38%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MATLHKFKLLASQCAVAGCPTQSPTASPVFHLRRRRRKTLRMLLNRADRRRFPYQDNSAD 60
           MATLHKFKLLASQCAVAGCPTQSPTASPVFHLRRRRRKTLRMLLNRADRRRFPYQDNSAD
Sbjct: 1   MATLHKFKLLASQCAVAGCPTQSPTASPVFHLRRRRRKTLRMLLNRADRRRFPYQDNSAD 60

Query: 61  PQDVDDDDDDDDNMIPEKNDKEVRARRKLKDLFVSSPPLEDKVSDRRIEEQEALLTTANT 120
           PQDVDDDDDDDDNMIPEKNDKEVRARRKLKDLFVSSPPLEDKVSDRRIEEQEALLTTANT
Sbjct: 61  PQDVDDDDDDDDNMIPEKNDKEVRARRKLKDLFVSSPPLEDKVSDRRIEEQEALLTTANT 120

Query: 121 SAAGIGTPSITRRSLRPISATFRYRFLRRAWRPVLVTIPE 161
            AAGIGTPSITRRSLRPISATFRYRFLRRAWRPVLVTIPE
Sbjct: 121 GAAGIGTPSITRRSLRPISATFRYRFLRRAWRPVLVTIPE 160

[Close]

BLAST of Carg22845 vs. NCBI nr
Match: XP_022993370.1 (uncharacterized protein LOC111489414 [Cucurbita maxima])

HSP 1 Score: 305.8 bits (782), Expect = 2.1e-79
Identity = 159/160 (99.38%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MATLHKFKLLASQCAVAGCPTQSPTASPVFHLRRRRRKTLRMLLNRADRRRFPYQDNSAD 60
           MATLHKFKLLASQCAVAGCPTQSPTASPVFHLRRRRRKTLRMLLNR DRRRFPYQDNSAD
Sbjct: 1   MATLHKFKLLASQCAVAGCPTQSPTASPVFHLRRRRRKTLRMLLNRTDRRRFPYQDNSAD 60

Query: 61  PQDVDDDDDDDDNMIPEKNDKEVRARRKLKDLFVSSPPLEDKVSDRRIEEQEALLTTANT 120
           PQDVDDDDDDDDNMIPEKNDKEVRARRKLKDLFVSSPPLEDKVSDRRIEEQEALLTTANT
Sbjct: 61  PQDVDDDDDDDDNMIPEKNDKEVRARRKLKDLFVSSPPLEDKVSDRRIEEQEALLTTANT 120

Query: 121 SAAGIGTPSITRRSLRPISATFRYRFLRRAWRPVLVTIPE 161
           SAAGIGTPSITRRSLRPISATFRYRFLRRAWRPVLVTIPE
Sbjct: 121 SAAGIGTPSITRRSLRPISATFRYRFLRRAWRPVLVTIPE 160

[Close]

BLAST of Carg22845 vs. NCBI nr
Match: XP_038885993.1 (uncharacterized protein LOC120076298 [Benincasa hispida])

HSP 1 Score: 274.2 bits (700), Expect = 6.9e-70
Identity = 144/160 (90.00%), Postives = 148/160 (92.50%), Query Frame = 0


Query: 1   MATLHKFKLLASQCAVAGCPTQSPTASPVFHLRRRRRKTLRMLLNRADRRRFPYQDNSAD 60
           MATLHKFKLLASQCAVAG PT+SP ASPV HLRRRRRKTLRMLLNR DRRRFPYQDNSAD
Sbjct: 1   MATLHKFKLLASQCAVAGSPTRSPNASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSAD 60

Query: 61  PQDVDDDDDDDDNMIPEKNDKEVRARRKLKDLFVSSPPLEDKVSDRRIEEQEALLTTANT 120
            QDVDDDDDD D MIPEKN+KEVRARRKLKDLFVSSPPLEDKVSDRRIEE+E  LT ANT
Sbjct: 61  SQDVDDDDDDSDLMIPEKNEKEVRARRKLKDLFVSSPPLEDKVSDRRIEEEEGFLTAANT 120

Query: 121 SAAGIGTPSITRRSLRPISATFRYRFLRRAWRPVLVTIPE 161
           SAAGIG+PS TRRSLRPISATFRYRFLRRAWRPVLV IPE
Sbjct: 121 SAAGIGSPSTTRRSLRPISATFRYRFLRRAWRPVLVAIPE 160

[Close]

BLAST of Carg22845 vs. NCBI nr
Match: XP_023546418.1 (uncharacterized protein LOC111805523 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 270.8 bits (691), Expect = 7.6e-69
Identity = 144/160 (90.00%), Postives = 146/160 (91.25%), Query Frame = 0


Query: 1   MATLHKFKLLASQCAVAGCPTQSPTASPVFHLRRRRRKTLRMLLNRADRRRFPYQDNSAD 60
           MATLHKFKLLASQCAV G PT+SPTASPV HLRRRRRKTLRMLLNR DRRRFPYQD SAD
Sbjct: 1   MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDTSAD 60

Query: 61  PQDVDDDDDDDDNMIPEKNDKEVRARRKLKDLFVSSPPLEDKVSDRRIEEQEALLTTANT 120
           PQDV DDDDDD+NMIPEKNDKEVRARRKLKDLFVSSPPLEDKVSDRRIEEQE LLT  N 
Sbjct: 61  PQDV-DDDDDDENMIPEKNDKEVRARRKLKDLFVSSPPLEDKVSDRRIEEQEGLLTAINA 120

Query: 121 SAAGIGTPSITRRSLRPISATFRYRFLRRAWRPVLVTIPE 161
           SAAGIGT S TRRSLRPIS TFRYRFLRRAWRPVLV IPE
Sbjct: 121 SAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE 159

[Close]

BLAST of Carg22845 vs. ExPASy TrEMBL
Match: A0A6J1FG66 (uncharacterized protein LOC111445119 OS=Cucurbita moschata OX=3662 GN=LOC111445119 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 3.6e-80
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MATLHKFKLLASQCAVAGCPTQSPTASPVFHLRRRRRKTLRMLLNRADRRRFPYQDNSAD 60
           MATLHKFKLLASQCAVAGCPTQSPTASPVFHLRRRRRKTLRMLLNRADRRRFPYQDNSAD
Sbjct: 1   MATLHKFKLLASQCAVAGCPTQSPTASPVFHLRRRRRKTLRMLLNRADRRRFPYQDNSAD 60

Query: 61  PQDVDDDDDDDDNMIPEKNDKEVRARRKLKDLFVSSPPLEDKVSDRRIEEQEALLTTANT 120
           PQDVDDDDDDDDNMIPEKNDKEVRARRKLKDLFVSSPPLEDKVSDRRIEEQEALLTTANT
Sbjct: 61  PQDVDDDDDDDDNMIPEKNDKEVRARRKLKDLFVSSPPLEDKVSDRRIEEQEALLTTANT 120

Query: 121 SAAGIGTPSITRRSLRPISATFRYRFLRRAWRPVLVTIPE 161
           SAAGIGTPSITRRSLRPISATFRYRFLRRAWRPVLVTIPE
Sbjct: 121 SAAGIGTPSITRRSLRPISATFRYRFLRRAWRPVLVTIPE 160

[Close]

BLAST of Carg22845 vs. ExPASy TrEMBL
Match: A0A6J1JYC4 (uncharacterized protein LOC111489414 OS=Cucurbita maxima OX=3661 GN=LOC111489414 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.0e-79
Identity = 159/160 (99.38%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MATLHKFKLLASQCAVAGCPTQSPTASPVFHLRRRRRKTLRMLLNRADRRRFPYQDNSAD 60
           MATLHKFKLLASQCAVAGCPTQSPTASPVFHLRRRRRKTLRMLLNR DRRRFPYQDNSAD
Sbjct: 1   MATLHKFKLLASQCAVAGCPTQSPTASPVFHLRRRRRKTLRMLLNRTDRRRFPYQDNSAD 60

Query: 61  PQDVDDDDDDDDNMIPEKNDKEVRARRKLKDLFVSSPPLEDKVSDRRIEEQEALLTTANT 120
           PQDVDDDDDDDDNMIPEKNDKEVRARRKLKDLFVSSPPLEDKVSDRRIEEQEALLTTANT
Sbjct: 61  PQDVDDDDDDDDNMIPEKNDKEVRARRKLKDLFVSSPPLEDKVSDRRIEEQEALLTTANT 120

Query: 121 SAAGIGTPSITRRSLRPISATFRYRFLRRAWRPVLVTIPE 161
           SAAGIGTPSITRRSLRPISATFRYRFLRRAWRPVLVTIPE
Sbjct: 121 SAAGIGTPSITRRSLRPISATFRYRFLRRAWRPVLVTIPE 160

[Close]

BLAST of Carg22845 vs. ExPASy TrEMBL
Match: A0A6J1JSX9 (uncharacterized protein LOC111487551 OS=Cucurbita maxima OX=3661 GN=LOC111487551 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 8.2e-69
Identity = 144/160 (90.00%), Postives = 146/160 (91.25%), Query Frame = 0


Query: 1   MATLHKFKLLASQCAVAGCPTQSPTASPVFHLRRRRRKTLRMLLNRADRRRFPYQDNSAD 60
           MATLHKFKLLASQCAV G PT+SPTASPV HLRRRRRKTLRMLLNR DRRRFPYQD SAD
Sbjct: 1   MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDASAD 60

Query: 61  PQDVDDDDDDDDNMIPEKNDKEVRARRKLKDLFVSSPPLEDKVSDRRIEEQEALLTTANT 120
           PQDV DDDDDD+NMIPEKNDKEVRARRKLKDLFVSSPPLED VSDRRIEEQE LLT  NT
Sbjct: 61  PQDV-DDDDDDENMIPEKNDKEVRARRKLKDLFVSSPPLEDTVSDRRIEEQEGLLTAINT 120

Query: 121 SAAGIGTPSITRRSLRPISATFRYRFLRRAWRPVLVTIPE 161
           SAAGIGT S TRRSLRPIS TFRYRFLRRAWRPVLV IPE
Sbjct: 121 SAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE 159

[Close]

BLAST of Carg22845 vs. ExPASy TrEMBL
Match: A0A6J1H7N8 (uncharacterized protein LOC111460905 OS=Cucurbita moschata OX=3662 GN=LOC111460905 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.1e-68
Identity = 143/160 (89.38%), Postives = 146/160 (91.25%), Query Frame = 0


Query: 1   MATLHKFKLLASQCAVAGCPTQSPTASPVFHLRRRRRKTLRMLLNRADRRRFPYQDNSAD 60
           MATLHKFKLLASQCAV G PT+SPTASPV HLRRRRRKTLRMLLNR DRRRFPYQD SAD
Sbjct: 1   MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDTSAD 60

Query: 61  PQDVDDDDDDDDNMIPEKNDKEVRARRKLKDLFVSSPPLEDKVSDRRIEEQEALLTTANT 120
           PQDV DDDDDD+NMIPEKNDKEV+ARRKLKDLFVSSPPLEDKVSDRRIEEQE LLT  N 
Sbjct: 61  PQDV-DDDDDDENMIPEKNDKEVQARRKLKDLFVSSPPLEDKVSDRRIEEQEGLLTAINA 120

Query: 121 SAAGIGTPSITRRSLRPISATFRYRFLRRAWRPVLVTIPE 161
           SAAGIGT S TRRSLRPIS TFRYRFLRRAWRPVLV IPE
Sbjct: 121 SAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE 159

[Close]

BLAST of Carg22845 vs. ExPASy TrEMBL
Match: A0A6J1BYN1 (uncharacterized protein LOC111006461 OS=Momordica charantia OX=3673 GN=LOC111006461 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 7.7e-67
Identity = 141/160 (88.12%), Postives = 149/160 (93.12%), Query Frame = 0


Query: 1   MATLHKFKLLASQCAVAGCPTQSPTASPVFHLRRRRRKTLRMLLNRADRRRFPYQDNSAD 60
           MATLHKFKLLASQC VAG PT+SPTASPV HLRRRRRKTLRMLLNR DRRRFPYQDNSAD
Sbjct: 1   MATLHKFKLLASQCTVAGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSAD 60

Query: 61  PQDVDDDDDDDDNMIPEKNDKEVRARRKLKDLFVSSPPLEDKVSDRRIEEQEALLTTANT 120
           PQDV DD++DD+NMIPEKN+KEVRARRKLKDLFVSSPP +DKVSDRRIEEQE LLT +NT
Sbjct: 61  PQDV-DDEEDDENMIPEKNEKEVRARRKLKDLFVSSPPGDDKVSDRRIEEQEGLLTASNT 120

Query: 121 SAAGIGTPSITRRSLRPISATFRYRFLRRAWRPVLVTIPE 161
           SAAGIGT S TRRSLRPIS+TFRYRFLRRAWRPVLV IPE
Sbjct: 121 SAAGIGT-STTRRSLRPISSTFRYRFLRRAWRPVLVAIPE 158

[Close]

BLAST of Carg22845 vs. TAIR 10
Match: AT1G66890.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: 50S ribosomal protein-related (TAIR:AT5G16200.1); Has 36 Blast hits to 36 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 98.2 bits (243), Expect = 6.3e-21
Identity = 76/175 (43.43%), Postives = 97/175 (55.43%), Query Frame = 0


Query: 3   TLHKFKLLASQCAVAGCPTQSPTASPVFHLRRRRRKTLRMLLNR-ADRRRFPYQDNSADP 62
           +L KFKLLA+ C+      +SPT SPV HL  RRRKTLR+LL R +DR R P   N+ D 
Sbjct: 2   SLQKFKLLATHCSTV---AESPTRSPVIHL--RRRKTLRLLLTRSSDRWRLPEIQNNVDE 61

Query: 63  QDVDDDDDDDDNMIPEKNDK--EVRARRKLKDLFVSSPPLE--------DKVSDRRIEEQ 122
                          +K DK  ++R+ RKL DLFVSSPP E        DK +   +E +
Sbjct: 62  S--------------KKTDKRGKIRSSRKLGDLFVSSPPFEESGGGGGGDKGTKMEVEME 121

Query: 123 EALLTTANTSAAGIGTPSITRR-----SLRPISA-TFRYRFLRRAWRPVLVTIPE 161
             +     ++ AG G     RR     S+RP+S+ T R R LRR+WRPVLVTIPE
Sbjct: 122 RDVPVNGVSNNAGFGEEITARRVGFNGSVRPMSSVTLRCRLLRRSWRPVLVTIPE 157

[Close]

BLAST of Carg22845 vs. TAIR 10
Match: AT5G16200.1 (50S ribosomal protein-related )

HSP 1 Score: 81.3 bits (199), Expect = 8.0e-16
Identity = 66/168 (39.29%), Postives = 95/168 (56.55%), Query Frame = 0


Query: 1   MATLHKFKLLAS----QCAVAGCPTQSPTASPVFHLRRRRRKTLRMLLNR-ADRRRFPYQ 60
           ++ LHKFKL A+    + + AG PT SPT SPVF+L  RRRKTLRML ++ +D RR   +
Sbjct: 3   LSRLHKFKLFAAHRSLEASTAGSPTMSPTKSPVFNL--RRRKTLRMLFDKSSDSRRRNLR 62

Query: 61  DNSADPQDVDDDDDDDDNMIPEKNDKEVRARRKLKDLFVS--SPPLEDKVSDRRIEEQEA 120
                 Q +++  + D N   +K       RRKL++L V+  SPP + +     I E+ +
Sbjct: 63  ------QILEESPESDGNSGNKKRGNHRATRRKLRELLVTSPSPPYKGREDIDGIGEERS 122

Query: 121 LLTTANTSAAGIGTPSITRRSLRPISA-TFRYRFLRRAWRPVLVTIPE 161
            ++  N ++ G G     RR     S  +FR R LR+ WRPVLV+IPE
Sbjct: 123 EISPLNVTSNGDGRELTARRFGSSGSVQSFRLRILRKPWRPVLVSIPE 162

[Close]

BLAST of Carg22845 vs. TAIR 10
Match: AT1G68430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G66890.1); Has 35 Blast hits to 35 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-09
Identity = 60/169 (35.50%), Postives = 82/169 (48.52%), Query Frame = 0


Query: 1   MATLHKFKLLASQCAVAG-CPTQSPT--ASPVFHLRRRRRKTLRMLLNRADRRRFPYQDN 60
           MATL +FK L +QC VA   PT+SP+   SP+  L RR++ TL+MLL+ A   R   Q  
Sbjct: 1   MATLQRFKFLGTQCGVAAQSPTRSPSPRTSPLVQL-RRKKTTLKMLLSLASPSRREQQP- 60

Query: 61  SADPQDVDDDDDDDDNMIPEKNDKEVRARRKLKDLFVSSPPLEDKVSD------RRIEEQ 120
                            +   + K+V A RKLKDLFVSS   E++  +      +  EE 
Sbjct: 61  -----------------LIHHHHKDV-AGRKLKDLFVSSSSAEEEQEEDERPKGKTKEEV 120

Query: 121 EALLTTANTSAAGIGTPSITRRSLRPISATFRYRFLRRAWRPVLVTIPE 161
            A +     +A+ +   S       P+   F  R L+RAWRP L TI E
Sbjct: 121 LAAMAAKLNAASRLQCES---ADAAPVWFGFSKRLLQRAWRPKLGTIHE 146

The following BLAST results are available for this feature:

BLAST of Carg22845 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939119.1	7.4e-80	100.00	uncharacterized protein LOC111445119 [Cucurbita moschata] >KAG7015924.1 hypothet...	[more]
XP_023551541.1	2.1e-79	99.38	uncharacterized protein LOC111809331 [Cucurbita pepo subsp. pepo] >KAG6578345.1 ...	[more]
XP_022993370.1	2.1e-79	99.38	uncharacterized protein LOC111489414 [Cucurbita maxima]	[more]
XP_038885993.1	6.9e-70	90.00	uncharacterized protein LOC120076298 [Benincasa hispida]	[more]
XP_023546418.1	7.6e-69	90.00	uncharacterized protein LOC111805523 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg22845 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg22845 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FG66	3.6e-80	100.00	uncharacterized protein LOC111445119 OS=Cucurbita moschata OX=3662 GN=LOC1114451...	[more]
A0A6J1JYC4	1.0e-79	99.38	uncharacterized protein LOC111489414 OS=Cucurbita maxima OX=3661 GN=LOC111489414...	[more]
A0A6J1JSX9	8.2e-69	90.00	uncharacterized protein LOC111487551 OS=Cucurbita maxima OX=3661 GN=LOC111487551...	[more]
A0A6J1H7N8	1.1e-68	89.38	uncharacterized protein LOC111460905 OS=Cucurbita moschata OX=3662 GN=LOC1114609...	[more]
A0A6J1BYN1	7.7e-67	88.13	uncharacterized protein LOC111006461 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]

BLAST of Carg22845 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G66890.1	6.3e-21	43.43	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT5G16200.1	8.0e-16	39.29	50S ribosomal protein-related	[more]
AT1G68430.1	3.3e-09	35.50	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..82
None	No IPR available	PANTHER	PTHR34542:SF6	50S RIBOSOMAL-LIKE PROTEIN	coord: 1..160
None	No IPR available	PANTHER	PTHR34542	OS08G0359900 PROTEIN	coord: 1..160
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..19 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22845-RA	Carg22845-RA	mRNA