Carg22834 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg22834
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr15: 426635 .. 428745 (-)
RNA-Seq ExpressionCarg22834
SyntenyCarg22834
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGATAACACCAACGGAGAGGTTGGAAGGGATACTCTTCGCTGATATCATTCACAGCACAGAGACCAAATGGATGGCAATGGTTCCATAAACAATGAACTACACGGAAAGGTACAAACTCCCCACGCCCTTCCTCTTGGATCAACTGTTTGAGCATTTTGAAGTGTCAATTGCTGGCTTCAGGTTGCATCAGCAGTGTGCTTATGGCTTCTCCAACTCCACCGAAGGTATGGAGAAGACATGGGTTATCACGTTTTTCTTTGGATTTCCTTGAATAATTGAAAGGGTTTGTTCGTCCAGGTCAATTACAGCAGTACACAGTGTGTAAAGCGTAGGGCCTGAAAACGTTTAAGGAAATGTTCAAATGTGGGTTTGAAAGGACTGGGAAATCTAAACCATCTCTATATTACTCACTTACCTCTCATGTAGATTGGATACTCCTTGTTGTCCACATCTCCAAGAACTGACATGAATTCATTTTTTGATCCTTTTGGCAGCTCATCAGCTCGTTTCTGCCTGCTTCTAGAGTTTGCGTCTTCTACCTGCGTTTCAGTTTTTTGATTTTGGGTCGATACTATCGCGGTCAGTTTTTCGATTTGATTTTAAAACGCGTCTTTTAGGGAGATGTTTTCACACCCTTATAAGGAGTATTTTGTTTCCCTCTCCAATCGACGTGGGATCTCACAATCCACCCCTTTAGGAGTCCAACGTGGTACATCGTTTGATGTTTGGGTCTGATACCATTTGTAACGGTCAAAGTCTATCGCTAGCAGATATTGTCTGCTTTGACCCATTACGTATCGCCTCACCGTTTTAAAACTCGACTTCTAGGGGAGGTTTAAATGGTTTTTCCTGATACTCTTACCTGGTTAACCTGAAGATGGGTATACATATTTGCATGAAAAAATGGTGTAGCCCCAACCTCGTTGACTGAATATCTAAACCTTGATGCTGTTTCTACATTCACAATTCTCCTTGTCTGTACATGAATCAGATTATAACTGTGCCCAACCGATACTTCTGCTGAGCGAACTCTCTGTAAAGAGAATCAAACCCAAAGTGTCATCAGATAAGCTACAACATTTATAATACAAGACATCATTGCAGGGCATTACAGATATTGCGTTCTCAAGGCTTGTAGATTCAAGGAGGTCCCGGGAGATAAAGTTTCGTCCAATGCCCCCAGCTGCAACCTCTTCATTGGTTGGAGGCACTGAATTCAAGGTAAATGCCTAAAATATTTCAAAATATGCTATGCTTTAGCGTTCAATTCATTCATAATTCATTCATAAATGATGATGGTTTGAAGAGTTTACCAGTCCATGGTTATTAAAACCAAAAGCGCAGCTCGGAAGCTCTCCTGCGTAGGTATAAGCAACAAAGGACAGCCCATTTTGCAGTTTTCCTTTTACCAAATAGCTACGAAAGTGGAGAAACAAATGAACTTGTCCGGTGGGCTGGTTTATAATTGTGGGATAAAGTCCAGGTTTGTGAACAACTTACGTGTGGCCAACCAGAGCAACGTTGGCATCTTCATTATGTGCTGCAATGGCCATGTTTTCACTAACAACAAGAAGATCAGAGCAATCATCTGAACAATCAACTGCTAAAGCTACTTCCTTGTGAAGAAATGGAAGTATCTCCTTCCTGAAGTTGATTAGAATAATCTGCATATTGATTTTCAACGAAGATATCACAGACAGAACAGAAAACCAGGTCTCATTTATGTCTCTCTCCCTCTACAATTTTGTATTATTACCTCAAGAACAGGCACACTGCTTCCTTCTGCAATTCCGACAAGCTCATCCCAATATGTTGGAAACCTTGTCTTGTTATTGTTGCAGAGAGCTTGAATAAGAGGCTGGGACTGAGGGGCTTGAGCGAAAGGAAGGAGCTGGTCACGAAGAACAAGGTCTTTGTCCAATCTGCTCTTTATGGTATCAGAGAACCTCTTCCCAATCAAGAACCCCATCTGATATGCAGATTCGCATGGACCAACTTCAAACATCTCCACCTTCTTGCCCGCCATACCCCAACTTTTCTGCTCTTTCTTTTTATGGAGTTTTGGTGCAATTAAGGTATGACTTATCTTCTTCCCTACCTATGTTCTAG

mRNA sequence

TGGATAACACCAACGGAGAGGTTGGAAGGGATACTCTTCGCTGATATCATTCACAGCACAGAGACCAAATGGATGGCAATGGTTCCATAAACAATGAACTACACGGAAAGGTTGCATCAGCAGTGTGCTTATGGCTTCTCCAACTCCACCGAAGGTATGGAGAAGACATGGGTTATCACGGCATTACAGATATTGCGTTCTCAAGGCTTGTAGATTCAAGGAGGTCCCGGGAGATAAAGTTTCGTCCAATGCCCCCAGCTGCAACCTCTTCATTGGTTGGAGGCACTGAATTCAAGTCCATGGTTATTAAAACCAAAAGCGCAGCTCGGAAGCTCTCCTGCGTAGAGAGCTTGAATAAGAGGCTGGGACTGAGGGGCTTGAGCGAAAGGAAGGAGCTGGTCACGAAGAACAAGATTCGCATGGACCAACTTCAAACATCTCCACCTTCTTGCCCGCCATACCCCAACTTTTCTGCTCTTTCTTTTTATGGAGTTTTGGTGCAATTAAGGTATGACTTATCTTCTTCCCTACCTATGTTCTAG

Coding sequence (CDS)

ATGGATGGCAATGGTTCCATAAACAATGAACTACACGGAAAGGTTGCATCAGCAGTGTGCTTATGGCTTCTCCAACTCCACCGAAGGTATGGAGAAGACATGGGTTATCACGGCATTACAGATATTGCGTTCTCAAGGCTTGTAGATTCAAGGAGGTCCCGGGAGATAAAGTTTCGTCCAATGCCCCCAGCTGCAACCTCTTCATTGGTTGGAGGCACTGAATTCAAGTCCATGGTTATTAAAACCAAAAGCGCAGCTCGGAAGCTCTCCTGCGTAGAGAGCTTGAATAAGAGGCTGGGACTGAGGGGCTTGAGCGAAAGGAAGGAGCTGGTCACGAAGAACAAGATTCGCATGGACCAACTTCAAACATCTCCACCTTCTTGCCCGCCATACCCCAACTTTTCTGCTCTTTCTTTTTATGGAGTTTTGGTGCAATTAAGGTATGACTTATCTTCTTCCCTACCTATGTTCTAG

Protein sequence

MDGNGSINNELHGKVASAVCLWLLQLHRRYGEDMGYHGITDIAFSRLVDSRRSREIKFRPMPPAATSSLVGGTEFKSMVIKTKSAARKLSCVESLNKRLGLRGLSERKELVTKNKIRMDQLQTSPPSCPPYPNFSALSFYGVLVQLRYDLSSSLPMF
Homology
[Close]
BLAST of Carg22834 vs. NCBI nr
Match: KAG7015934.1 (hypothetical protein SDJN02_21038 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 316.2 bits (809), Expect = 1.6e-82
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0 

Query: 1   MDGNGSINNELHGKVASAVCLWLLQLHRRYGEDMGYHGITDIAFSRLVDSRRSREIKFRP 60
           MDGNGSINNELHGKVASAVCLWLLQLHRRYGEDMGYHGITDIAFSRLVDSRRSREIKFRP
Sbjct: 1   MDGNGSINNELHGKVASAVCLWLLQLHRRYGEDMGYHGITDIAFSRLVDSRRSREIKFRP 60

Query: 61  MPPAATSSLVGGTEFKSMVIKTKSAARKLSCVESLNKRLGLRGLSERKELVTKNKIRMDQ 120
           MPPAATSSLVGGTEFKSMVIKTKSAARKLSCVESLNKRLGLRGLSERKELVTKNKIRMDQ
Sbjct: 61  MPPAATSSLVGGTEFKSMVIKTKSAARKLSCVESLNKRLGLRGLSERKELVTKNKIRMDQ 120

Query: 121 LQTSPPSCPPYPNFSALSFYGVLVQLRYDLSSSLPMF 158
           LQTSPPSCPPYPNFSALSFYGVLVQLRYDLSSSLPMF
Sbjct: 121 LQTSPPSCPPYPNFSALSFYGVLVQLRYDLSSSLPMF 157

[Close]
BLAST of Carg22834 vs. NCBI nr
Match: KAG7015936.1 (hypothetical protein SDJN02_21040 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 286.6 bits (732), Expect = 1.3e-73
Identity = 142/147 (96.60%), Postives = 144/147 (97.96%), Query Frame = 0 

Query: 1   MDGNGSINNELHGKVASAVCLWLLQLHRRYGEDMGYHGITDIAFSRLVDSRRSREIKFRP 60
           MDGNGSINNELHGKVASAVCLWLLQLHRRYGEDMGYHGITDIAFSRLVDSRRSREIKFRP
Sbjct: 1   MDGNGSINNELHGKVASAVCLWLLQLHRRYGEDMGYHGITDIAFSRLVDSRRSREIKFRP 60

Query: 61  MPPAATSSLVGGTEFKSMVIKTKSAARKLSCVESLNKRLGLRGLSERKELVTKNKIRMDQ 120
           +PPAATSSLVGGTEFKSMVIKTK AA KLSCVESLNKRLGLRGLSERKELVTKNKIRMDQ
Sbjct: 61  IPPAATSSLVGGTEFKSMVIKTKGAAGKLSCVESLNKRLGLRGLSERKELVTKNKIRMDQ 120

Query: 121 LQTSPPSCPPYPNFSALSFYGVLVQLR 148
           L+TSPPSCPPYPNFSALSF GVLVQLR
Sbjct: 121 LRTSPPSCPPYPNFSALSFCGVLVQLR 147

The following BLAST results are available for this feature:
BLAST of Carg22834 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7015934.11.6e-82100.00hypothetical protein SDJN02_21038 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG7015936.11.3e-7396.60hypothetical protein SDJN02_21040 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Carg22834 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg22834 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg22834 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22834-RACarg22834-RAmRNA