Carg22828 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22828
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	LOL1 (LSD ONE LIKE 1)
Location	Carg_Chr19: 5234061 .. 5236600 (+)
RNA-Seq Expression	Carg22828
Synteny	Carg22828

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGAGAGAGAGAGGGTGTGTGACGCGGCTCCTCAACAGCCATGAGTGTATCCCAATAGAGAGGAGCGTGTGGCCCTTTGCCCCCACACTCACATGTTCCCAACGCCTTCATCACCAAACTTGAAGAATTAACCCATTTCTTAACAATACCCCCTTTCATCTTCTTCTTCTTACCATCCATCCGCCTGCCTCTCCACCTCTTAACACCCCTCGATTCGATCCATGAATCAGTGCTCATAAGTGGGGTTTGATCGGCGGAGCAGCCCCTCCTCCTCAACCCCAAACCCCCCCGCAGCTATGTGGACTCGGAGCAGCCATTGGAAACAAGTTTGGAATACAAAAAGAACCGATAACGACAGGTTAGACTAGCAACTCTCTTCATAATCATCCTTTTGGCTCTCTCATTCTTGCTTGGTTACTTTGTCAAATCTCTCGAGTTTTTTTACATAAACCCCTTTTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCCCTCTCCCTCACTCTATCCTCTGCAAGTTGCAACTCTATGAATCTGCCCCACTTCTTCCATTGCCTTTTCAAGCTTTCTTGTTGGGTTTCTCTTTATTTGGTTTGTTCCATATCTTCTTCAATAATCATACATTATAGTTCTTTACTCTGTTTTGTGGGTTTTGCTTCATTTCAATCCAAATTTCAACCCAACCCATGATGTAATTTTGTTTCTAATCTGTTCTTGTTTAAGGGTTTTCTGTGAATTTGTTCATCAGGCTCATATCTAGATTCTTGTTTCCATGGGAGAGTAGCTGGTATTGTTTGTTGCTGAGGCAGTGAGGTTTTAAAGAGAGAAGTAGGGAAGATTTTCCTCTATCAAGCTGCAAAATGCCACCGGTTCCTCTTGCACCATATCCAACACCTCCTGCACCTTATTCACAGCCTGCTAATGGTATTCACTCTGTTTCAAAGCTTTACATTATTGTTTGGTTGTTGAGGAATTGATTTGGTTTGTGTGAGATCCCACGTCGGCCTGGGGAGGAGAACGGAGCACCCTTTATTATAAGGGCGTGTAAACCTCTCCCTAGTAGACGCGTTTTAAAGGGAAAGCCCAAAAAGGACAATATCTGCTAGCGGTGGGCTTGGGCCGTTACAGTTTGCCATTTTTCAACTCTCTAAGTGGGAAGTCTATTGATTTTCCCATTCAATGGACCTCAGCCCCACTGTTTGAGGTAGCATATCCATAGCCAAATTGGTTATGAGAAACCCTGCAAGAATGGCTCAAGTTTTCAGGCTTAGTTTGGATTTTCTATGTGTTTGTGTGTGTTTTCATAGATCAGTGCTTGAAATGTGGATTTTGTTGGTCATTAGCCACACAGAGCCAGCTTGTGTGCTCAGGATGTAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCAGTTTGTAATGCAGTCACTGCCGTTCCACCTCCTGGTATATCTGTTCTTCCTCTTCTTTTTCACCATCTGCAAGAAATATTGCAAGTGTTAGTTGCTTTATGCTGTAAAACAGGCACAGAAATGGCACAATTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATCCGCGGTGCCACGAGCGTACAATGCTCTTGTTGCCACACCGTCAACTTAGCTTTGGAAGGTATGGAAATCTAACTAGTTTCAAGAGTGATTCTACAAATCTTGGTAAATTTCTTTCCTAGCCAGCTCCCATCATGAATATCAGCATTCTCTGTTCACTAAGAACATATATTCGAATCCGTTCTTCTAATGATTGTTTGGGGATGCAAACCTTGGTGTTTTAAGGCACGACTCCTGTGCATTAAGCGTCGAATGTATACGTTACAGCAAATCAGGTGGCACACGTTAGCTGCGGGAACTGCAGGATGCTACTGATGTATCAGTATGGAGCACGCTCAGTGAAATGTGCAGTATGCAATTTTGTGACATCAATTGGTGTAAGTATAAAACTTTCATTCCATTGAATTACTGTTAGTTTCATCAGTTTAAGCATCATCTGAAAGCTCAGAACACCAACAGAGCTCTGATAGTTATATATTTCCATCGTCGTTTCTTACTCAAATCTGAAGAGAATCCGTCCATTCTAGTAGTACCTCACACTATTAATGTCTTTCGTTGTAGATGACAACAAGTGCGATCGATCAAAAAGCTTAATAGCTAAAGTTATCGTAAACATGGTTGTCCCAAATTTGACAACTGCGGCTTTGCAATATTCGTAACGCCCTACACGGTGTTTGTCCGACTCAACGAGCGGAGGTTCTTTTTCGTATTCACTTGTATAGAGCTTTATTTCTGTGTGTGAACTTTTAATGTTTCTTTTTTCGTCTTCATAGTGCTTGAATGATGTTTGTATGATTTAAATAATTTTGGCCTCCTTGGGGGGAAAGAATATATGGTATCAGACAACTTTCTATACTAAGCTGAGTGTAATTTTTACCCTCTCTTTGTGAACTGCACAAGAAGGTTTATATCAGATATCATCAGCTTTTTGAG

mRNA sequence

AGAGAGAGAGAGAGGGTGTGTGACGCGGCTCCTCAACAGCCATGAGTGTATCCCAATAGAGAGGAGCGTGTGGCCCTTTGCCCCCACACTCACATGTTCCCAACGCCTTCATCACCAAACTTGAAGAATTAACCCATTTCTTAACAATACCCCCTTTCATCTTCTTCTTCTTACCATCCATCCGCCTGCCTCTCCACCTCTTAACACCCCTCGATTCGATCCATGAATCAGTGCTCATAAGTGGGGTTTGATCGGCGGAGCAGCCCCTCCTCCTCAACCCCAAACCCCCCCGCAGCTATGTGGACTCGGAGCAGCCATTGGAAACAAGTTTGGAATACAAAAAGAACCGATAACGACAGGCTCATATCTAGATTCTTGTTTCCATGGGAGAGTAGCTGGTATTATCAGTGCTTGAAATGTGGATTTTGTTGGTCATTAGCCACACAGAGCCAGCTTGTGTGCTCAGGATGTAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCAGTTTGTAATGCAGTCACTGCCGTTCCACCTCCTGGCACAGAAATGGCACAATTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATCCGCGGTGCCACGAGCGTACAATGCTCTTGTTGCCACACCGTCAACTTAGCTTTGGAAGCTCCCATCATGAATATCAGCATTCTCTGTTCACTAAGAACATATATTCGAATCCGTTCTTCTAATGATTGTTTGGGGATGCAAACCTTGGTGGCACACGTTAGCTGCGGGAACTGCAGGATGCTACTGATGTATCAGTATGGAGCACGCTCAGTGAAATGTGCAGTATGCAATTTTGTGACATCAATTGATGACAACAAGTGCGATCGATCAAAAAGCTTAATAGCTAAAGTTATCGTAAACATGGTTGTCCCAAATTTGACAACTGCGGCTTTGCAATATTCGTAACGCCCTACACGGTGTTTGTCCGACTCAACGAGCGGAGGTTCTTTTTCGTATTCACTTGTATAGAGCTTTATTTCTGTGTGTGAACTTTTAATGTTTCTTTTTTCGTCTTCATAGTGCTTGAATGATGTTTGTATGATTTAAATAATTTTGGCCTCCTTGGGGGGAAAGAATATATGGTATCAGACAACTTTCTATACTAAGCTGAGTGTAATTTTTACCCTCTCTTTGTGAACTGCACAAGAAGGTTTATATCAGATATCATCAGCTTTTTGAG

Coding sequence (CDS)

ATGTGGACTCGGAGCAGCCATTGGAAACAAGTTTGGAATACAAAAAGAACCGATAACGACAGGCTCATATCTAGATTCTTGTTTCCATGGGAGAGTAGCTGGTATTATCAGTGCTTGAAATGTGGATTTTGTTGGTCATTAGCCACACAGAGCCAGCTTGTGTGCTCAGGATGTAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCAGTTTGTAATGCAGTCACTGCCGTTCCACCTCCTGGCACAGAAATGGCACAATTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATCCGCGGTGCCACGAGCGTACAATGCTCTTGTTGCCACACCGTCAACTTAGCTTTGGAAGCTCCCATCATGAATATCAGCATTCTCTGTTCACTAAGAACATATATTCGAATCCGTTCTTCTAATGATTGTTTGGGGATGCAAACCTTGGTGGCACACGTTAGCTGCGGGAACTGCAGGATGCTACTGATGTATCAGTATGGAGCACGCTCAGTGAAATGTGCAGTATGCAATTTTGTGACATCAATTGATGACAACAAGTGCGATCGATCAAAAAGCTTAATAGCTAAAGTTATCGTAAACATGGTTGTCCCAAATTTGACAACTGCGGCTTTGCAATATTCGTAA

Protein sequence

MWTRSSHWKQVWNTKRTDNDRLISRFLFPWESSWYYQCLKCGFCWSLATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEAPIMNISILCSLRTYIRIRSSNDCLGMQTLVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSIDDNKCDRSKSLIAKVIVNMVVPNLTTAALQYS

Homology

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BLAST of Carg22828 vs. NCBI nr
Match: KAG7011533.1 (Protein LOL1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 454.9 bits (1169), Expect = 3.9e-124
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MWTRSSHWKQVWNTKRTDNDRLISRFLFPWESSWYYQCLKCGFCWSLATQSQLVCSGCRN 60
           MWTRSSHWKQVWNTKRTDNDRLISRFLFPWESSWYYQCLKCGFCWSLATQSQLVCSGCRN
Sbjct: 1   MWTRSSHWKQVWNTKRTDNDRLISRFLFPWESSWYYQCLKCGFCWSLATQSQLVCSGCRN 60

Query: 61  LLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNL 120
           LLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNL
Sbjct: 61  LLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNL 120

Query: 121 ALEAPIMNISILCSLRTYIRIRSSNDCLGMQTLVAHVSCGNCRMLLMYQYGARSVKCAVC 180
           ALEAPIMNISILCSLRTYIRIRSSNDCLGMQTLVAHVSCGNCRMLLMYQYGARSVKCAVC
Sbjct: 121 ALEAPIMNISILCSLRTYIRIRSSNDCLGMQTLVAHVSCGNCRMLLMYQYGARSVKCAVC 180

Query: 181 NFVTSIDDNKCDRSKSLIAKVIVNMVVPNLTTAALQYS 219
           NFVTSIDDNKCDRSKSLIAKVIVNMVVPNLTTAALQYS
Sbjct: 181 NFVTSIDDNKCDRSKSLIAKVIVNMVVPNLTTAALQYS 218

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BLAST of Carg22828 vs. NCBI nr
Match: XP_038887481.1 (protein LOL1 isoform X1 [Benincasa hispida] >XP_038887482.1 protein LOL1 isoform X1 [Benincasa hispida])

HSP 1 Score: 248.4 bits (633), Expect = 5.5e-62
Identity = 133/170 (78.24%), Postives = 135/170 (79.41%), Query Frame = 0


Query: 48  ATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGA 107
           ATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVT VPPPGTEMAQLVCGGCHTLLMYIRGA
Sbjct: 22  ATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTTVPPPGTEMAQLVCGGCHTLLMYIRGA 81

Query: 108 TSVQCSCCHTVNLALEAPIMNISILCSLRTYIRIRSSNDCLGMQTLVAHVSCGNCRMLLM 167
           TSVQCSCCHTVNLALEA                             VAHVSCGNCRMLLM
Sbjct: 82  TSVQCSCCHTVNLALEA---------------------------NQVAHVSCGNCRMLLM 141

Query: 168 YQYGARSVKCAVCNFVTS--IDDNKCDRSKSLIAKVIVNMVVPNLTTAAL 216
           YQYGARSVKCAVCNFVTS  +D N+ DRSKSLIAKVIVNMVVPN TTAAL
Sbjct: 142 YQYGARSVKCAVCNFVTSVGVDVNEHDRSKSLIAKVIVNMVVPNSTTAAL 164

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BLAST of Carg22828 vs. NCBI nr
Match: XP_030457276.1 (protein LOL1-like [Syzygium oleosum])

HSP 1 Score: 214.2 bits (544), Expect = 1.2e-51
Identity = 111/164 (67.68%), Postives = 121/164 (73.78%), Query Frame = 0


Query: 49  TQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGAT 108
           TQSQLVCSGCRNLLLYP GATS+CCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGAT
Sbjct: 24  TQSQLVCSGCRNLLLYPAGATSICCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGAT 83

Query: 109 SVQCSCCHTVNLALEAPIMNISILCSLRTYIRIRSSNDCLGMQTLVAHVSCGNCRMLLMY 168
           SVQCSCCHTVNLALEA                             VAHV+CGNCRMLLMY
Sbjct: 84  SVQCSCCHTVNLALEA---------------------------NQVAHVNCGNCRMLLMY 143

Query: 169 QYGARSVKCAVCNFVTSIDDNKCDRSKSLIAKVIVNMVVPNLTT 213
           QYGARSVKCAVCNFVTS+  +K   ++    ++ +N+ V  LTT
Sbjct: 144 QYGARSVKCAVCNFVTSVGFDKHTGTEVQQLELAINLPVTGLTT 160

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BLAST of Carg22828 vs. NCBI nr
Match: XP_004148490.1 (protein LOL1 [Cucumis sativus] >XP_011652655.1 protein LOL1 [Cucumis sativus] >XP_011652656.1 protein LOL1 [Cucumis sativus] >XP_011652657.1 protein LOL1 [Cucumis sativus] >XP_031737667.1 protein LOL1 [Cucumis sativus] >XP_031737668.1 protein LOL1 [Cucumis sativus] >KGN60405.1 hypothetical protein Csa_001040 [Cucumis sativus])

HSP 1 Score: 213.8 bits (543), Expect = 1.5e-51
Identity = 110/141 (78.01%), Postives = 111/141 (78.72%), Query Frame = 0


Query: 46  SLATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 105
           S ATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR
Sbjct: 20  SNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 79

Query: 106 GATSVQCSCCHTVNLALEAPIMNISILCSLRTYIRIRSSNDCLGMQTLVAHVSCGNCRML 165
           GATSVQCSCCHTVNLALEA                             VAHVSCGNCRML
Sbjct: 80  GATSVQCSCCHTVNLALEA---------------------------NQVAHVSCGNCRML 133

Query: 166 LMYQYGARSVKCAVCNFVTSI 187
           LMYQYGARSVKCAVCNFVTS+
Sbjct: 140 LMYQYGARSVKCAVCNFVTSV 133

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BLAST of Carg22828 vs. NCBI nr
Match: XP_022952054.1 (protein LOL1-like [Cucurbita moschata] >XP_022952055.1 protein LOL1-like [Cucurbita moschata] >XP_023553673.1 protein LOL1-like [Cucurbita pepo subsp. pepo] >KAG6571844.1 Protein LOL1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213.8 bits (543), Expect = 1.5e-51
Identity = 110/139 (79.14%), Postives = 110/139 (79.14%), Query Frame = 0


Query: 48  ATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGA 107
           ATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGA
Sbjct: 22  ATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGA 81

Query: 108 TSVQCSCCHTVNLALEAPIMNISILCSLRTYIRIRSSNDCLGMQTLVAHVSCGNCRMLLM 167
           TSVQCSCCHTVNLALEA                             VAHVSCGNCRMLLM
Sbjct: 82  TSVQCSCCHTVNLALEA---------------------------NQVAHVSCGNCRMLLM 133

Query: 168 YQYGARSVKCAVCNFVTSI 187
           YQYGARSVKCAVCNFVTSI
Sbjct: 142 YQYGARSVKCAVCNFVTSI 133

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BLAST of Carg22828 vs. ExPASy Swiss-Prot
Match: Q93ZB1 (Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 3.2e-52
Identity = 105/141 (74.47%), Postives = 109/141 (77.30%), Query Frame = 0


Query: 46  SLATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 105
           S + QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR
Sbjct: 28  STSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 87

Query: 106 GATSVQCSCCHTVNLALEAPIMNISILCSLRTYIRIRSSNDCLGMQTLVAHVSCGNCRML 165
           GATSVQCSCCHTVNLALEA                             VAHV+CGNC ML
Sbjct: 88  GATSVQCSCCHTVNLALEA---------------------------NQVAHVNCGNCMML 141

Query: 166 LMYQYGARSVKCAVCNFVTSI 187
           LMYQYGARSVKCAVCNFVTS+
Sbjct: 148 LMYQYGARSVKCAVCNFVTSV 141

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BLAST of Carg22828 vs. ExPASy Swiss-Prot
Match: Q0J7V9 (Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 6.6e-50
Identity = 100/137 (72.99%), Postives = 105/137 (76.64%), Query Frame = 0


Query: 50  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 109
           QSQLVCSGCRNLL+YP GATSVCCAVC+ VTAVP PGTEMAQLVCGGCHTLLMYIRGATS
Sbjct: 63  QSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGTEMAQLVCGGCHTLLMYIRGATS 122

Query: 110 VQCSCCHTVNLALEAPIMNISILCSLRTYIRIRSSNDCLGMQTLVAHVSCGNCRMLLMYQ 169
           VQCSCCHTVNLA+EA                             VAHV+CGNCRMLLMYQ
Sbjct: 123 VQCSCCHTVNLAMEA---------------------------NQVAHVNCGNCRMLLMYQ 172

Query: 170 YGARSVKCAVCNFVTSI 187
           YGARSVKCAVCNFVTS+
Sbjct: 183 YGARSVKCAVCNFVTSV 172

[Close]

BLAST of Carg22828 vs. ExPASy Swiss-Prot
Match: Q2QMB3 (Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.9e-33
Identity = 75/141 (53.19%), Postives = 93/141 (65.96%), Query Frame = 0


Query: 50  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTA-VPPPGTEMAQLVCGGCHTLLMYIRGAT 109
           QSQ+VC GCRN+LLYP GA SVCCAVC+AV++  P PG ++A L+CGGC TLLMY R AT
Sbjct: 2   QSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNAT 61

Query: 110 SVQCSCCHTVNLALEAPIMNISILCSLRTYIRIRSSNDCLGMQTLVAHVSCGNCRMLLMY 169
           SV+CSCC TVNL                  +R  SS         +AH++CG C+ +LMY
Sbjct: 62  SVRCSCCDTVNL------------------VRPVSS---------IAHLNCGQCQTVLMY 115

Query: 170 QYGARSVKCAVCNFVTSIDDN 190
            YGA SVKCA+CNF+T+   N
Sbjct: 122 PYGAPSVKCAICNFITNTGMN 115

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BLAST of Carg22828 vs. ExPASy Swiss-Prot
Match: Q6ASS2 (Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-32
Identity = 74/142 (52.11%), Postives = 88/142 (61.97%), Query Frame = 0


Query: 50  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG--TEMAQLVCGGCHTLLMYIRGA 109
           QSQ+VC GCR++L YP GA SVCCA+C A+T VPPP    EMA L+CGGC TLLMY R A
Sbjct: 2   QSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRNA 61

Query: 110 TSVQCSCCHTVNLALEAPIMNISILCSLRTYIRIRSSNDCLGMQTLVAHVSCGNCRMLLM 169
            +V+CSCC TVNL    P+ NI                         AHVSCG CR  LM
Sbjct: 62  DTVRCSCCSTVNLV--RPVNNI-------------------------AHVSCGQCRTTLM 116

Query: 170 YQYGARSVKCAVCNFVTSIDDN 190
           Y YGA SVKCA+C+++T+   N
Sbjct: 122 YPYGAPSVKCAICHYITNTGMN 116

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BLAST of Carg22828 vs. ExPASy Swiss-Prot
Match: P94077 (Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.4e-31
Identity = 69/140 (49.29%), Postives = 89/140 (63.57%), Query Frame = 0


Query: 50  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGA 109
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 7   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66

Query: 110 TSVQCSCCHTVNLALEAPIMNISILCSLRTYIRIRSSNDCLGMQTLVAHVSCGNCRMLLM 169
           +SV+CSCC T NL                  +   S+       + VA ++CG+CR  LM
Sbjct: 67  SSVRCSCCQTTNL------------------VPAHSNQVAHAPSSQVAQINCGHCRTTLM 126

Query: 170 YQYGARSVKCAVCNFVTSID 188
           Y YGA SVKCAVC FVT+++
Sbjct: 127 YPYGASSVKCAVCQFVTNVN 128

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BLAST of Carg22828 vs. ExPASy TrEMBL
Match: A0A6J1I7B6 (protein LOL1-like OS=Cucurbita maxima OX=3661 GN=LOC111470654 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 7.3e-52
Identity = 110/139 (79.14%), Postives = 110/139 (79.14%), Query Frame = 0


Query: 48  ATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGA 107
           ATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGA
Sbjct: 23  ATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGA 82

Query: 108 TSVQCSCCHTVNLALEAPIMNISILCSLRTYIRIRSSNDCLGMQTLVAHVSCGNCRMLLM 167
           TSVQCSCCHTVNLALEA                             VAHVSCGNCRMLLM
Sbjct: 83  TSVQCSCCHTVNLALEA---------------------------NQVAHVSCGNCRMLLM 134

Query: 168 YQYGARSVKCAVCNFVTSI 187
           YQYGARSVKCAVCNFVTSI
Sbjct: 143 YQYGARSVKCAVCNFVTSI 134

[Close]

BLAST of Carg22828 vs. ExPASy TrEMBL
Match: A0A6J1GKN9 (protein LOL1-like OS=Cucurbita moschata OX=3662 GN=LOC111454822 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 7.3e-52
Identity = 110/139 (79.14%), Postives = 110/139 (79.14%), Query Frame = 0


Query: 48  ATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGA 107
           ATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGA
Sbjct: 22  ATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGA 81

Query: 108 TSVQCSCCHTVNLALEAPIMNISILCSLRTYIRIRSSNDCLGMQTLVAHVSCGNCRMLLM 167
           TSVQCSCCHTVNLALEA                             VAHVSCGNCRMLLM
Sbjct: 82  TSVQCSCCHTVNLALEA---------------------------NQVAHVSCGNCRMLLM 133

Query: 168 YQYGARSVKCAVCNFVTSI 187
           YQYGARSVKCAVCNFVTSI
Sbjct: 142 YQYGARSVKCAVCNFVTSI 133

[Close]

BLAST of Carg22828 vs. ExPASy TrEMBL
Match: A0A0A0LEE4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902960 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 7.3e-52
Identity = 110/141 (78.01%), Postives = 111/141 (78.72%), Query Frame = 0


Query: 46  SLATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 105
           S ATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR
Sbjct: 20  SNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 79

Query: 106 GATSVQCSCCHTVNLALEAPIMNISILCSLRTYIRIRSSNDCLGMQTLVAHVSCGNCRML 165
           GATSVQCSCCHTVNLALEA                             VAHVSCGNCRML
Sbjct: 80  GATSVQCSCCHTVNLALEA---------------------------NQVAHVSCGNCRML 133

Query: 166 LMYQYGARSVKCAVCNFVTSI 187
           LMYQYGARSVKCAVCNFVTS+
Sbjct: 140 LMYQYGARSVKCAVCNFVTSV 133

[Close]

BLAST of Carg22828 vs. ExPASy TrEMBL
Match: A0A151R086 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_042921 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.2e-51
Identity = 107/141 (75.89%), Postives = 114/141 (80.85%), Query Frame = 0


Query: 50  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 109
           QSQLVCSGCRNLL++PVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS
Sbjct: 23  QSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 82

Query: 110 VQCSCCHTVNLALEAPIMNISILCSLRTY----IRIRSSNDCLGMQTLVAHVSCGNCRML 169
           VQCSCCHTVNLALE   +     C L  Y      +     C+     VAHV+CGNCRML
Sbjct: 83  VQCSCCHTVNLALED--IKTCFFCELNQYDLSPYFVGKHQMCIVTANQVAHVNCGNCRML 142

Query: 170 LMYQYGARSVKCAVCNFVTSI 187
           LMYQYGARSVKCAVCNFVTS+
Sbjct: 143 LMYQYGARSVKCAVCNFVTSV 161

[Close]

BLAST of Carg22828 vs. ExPASy TrEMBL
Match: A0A6J1DRW1 (protein LOL1 OS=Momordica charantia OX=3673 GN=LOC111022949 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 3.6e-51
Identity = 108/139 (77.70%), Postives = 109/139 (78.42%), Query Frame = 0


Query: 48  ATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGA 107
           A QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGA
Sbjct: 22  AAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGA 81

Query: 108 TSVQCSCCHTVNLALEAPIMNISILCSLRTYIRIRSSNDCLGMQTLVAHVSCGNCRMLLM 167
           TSVQCSCCHTVNLALEA                             VAHVSCGNCRMLLM
Sbjct: 82  TSVQCSCCHTVNLALEA---------------------------NQVAHVSCGNCRMLLM 133

Query: 168 YQYGARSVKCAVCNFVTSI 187
           YQYGARSVKCAVCNFVTS+
Sbjct: 142 YQYGARSVKCAVCNFVTSV 133

[Close]

BLAST of Carg22828 vs. TAIR 10
Match: AT1G32540.2 (lsd one like 1 )

HSP 1 Score: 206.5 bits (524), Expect = 2.2e-53
Identity = 105/141 (74.47%), Postives = 109/141 (77.30%), Query Frame = 0


Query: 46  SLATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 105
           S + QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR
Sbjct: 28  STSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 87

Query: 106 GATSVQCSCCHTVNLALEAPIMNISILCSLRTYIRIRSSNDCLGMQTLVAHVSCGNCRML 165
           GATSVQCSCCHTVNLALEA                             VAHV+CGNC ML
Sbjct: 88  GATSVQCSCCHTVNLALEA---------------------------NQVAHVNCGNCMML 141

Query: 166 LMYQYGARSVKCAVCNFVTSI 187
           LMYQYGARSVKCAVCNFVTS+
Sbjct: 148 LMYQYGARSVKCAVCNFVTSV 141

[Close]

BLAST of Carg22828 vs. TAIR 10
Match: AT1G32540.1 (lsd one like 1 )

HSP 1 Score: 206.5 bits (524), Expect = 2.2e-53
Identity = 106/144 (73.61%), Postives = 110/144 (76.39%), Query Frame = 0


Query: 43  FCWSLATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLM 102
           F  S + QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLM
Sbjct: 58  FVGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLM 117

Query: 103 YIRGATSVQCSCCHTVNLALEAPIMNISILCSLRTYIRIRSSNDCLGMQTLVAHVSCGNC 162
           YIRGATSVQCSCCHTVNLALEA                             VAHV+CGNC
Sbjct: 118 YIRGATSVQCSCCHTVNLALEA---------------------------NQVAHVNCGNC 174

Query: 163 RMLLMYQYGARSVKCAVCNFVTSI 187
            MLLMYQYGARSVKCAVCNFVTS+
Sbjct: 178 MMLLMYQYGARSVKCAVCNFVTSV 174

[Close]

BLAST of Carg22828 vs. TAIR 10
Match: AT1G32540.3 (lsd one like 1 )

HSP 1 Score: 206.5 bits (524), Expect = 2.2e-53
Identity = 105/141 (74.47%), Postives = 109/141 (77.30%), Query Frame = 0


Query: 46  SLATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 105
           S + QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR
Sbjct: 28  STSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 87

Query: 106 GATSVQCSCCHTVNLALEAPIMNISILCSLRTYIRIRSSNDCLGMQTLVAHVSCGNCRML 165
           GATSVQCSCCHTVNLALEA                             VAHV+CGNC ML
Sbjct: 88  GATSVQCSCCHTVNLALEA---------------------------NQVAHVNCGNCMML 141

Query: 166 LMYQYGARSVKCAVCNFVTSI 187
           LMYQYGARSVKCAVCNFVTS+
Sbjct: 148 LMYQYGARSVKCAVCNFVTSV 141

[Close]

BLAST of Carg22828 vs. TAIR 10
Match: AT4G20380.8 (LSD1 zinc finger family protein )

HSP 1 Score: 141.4 bits (355), Expect = 8.9e-34
Identity = 74/148 (50.00%), Postives = 99/148 (66.89%), Query Frame = 0


Query: 50  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGA 109
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 2   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 61

Query: 110 TSVQCSCCHTVNLALEA--PIMNISILCSLRTYI------RIRSSNDCLGMQTLVAHVSC 169
           +SV+CSCC T NL  E+   ++  +IL  L+T +         S+       + VA ++C
Sbjct: 62  SSVRCSCCQTTNLVPESSFTLLFDNILKVLKTKLLDGPGGLAHSNQVAHAPSSQVAQINC 121

Query: 170 GNCRMLLMYQYGARSVKCAVCNFVTSID 188
           G+CR  LMY YGA SVKCAVC FVT+++
Sbjct: 122 GHCRTTLMYPYGASSVKCAVCQFVTNVN 149

[Close]

BLAST of Carg22828 vs. TAIR 10
Match: AT4G20380.2 (LSD1 zinc finger family protein )

HSP 1 Score: 137.9 bits (346), Expect = 9.8e-33
Identity = 69/140 (49.29%), Postives = 89/140 (63.57%), Query Frame = 0


Query: 50  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGA 109
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 7   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66

Query: 110 TSVQCSCCHTVNLALEAPIMNISILCSLRTYIRIRSSNDCLGMQTLVAHVSCGNCRMLLM 169
           +SV+CSCC T NL                  +   S+       + VA ++CG+CR  LM
Sbjct: 67  SSVRCSCCQTTNL------------------VPAHSNQVAHAPSSQVAQINCGHCRTTLM 126

Query: 170 YQYGARSVKCAVCNFVTSID 188
           Y YGA SVKCAVC FVT+++
Sbjct: 127 YPYGASSVKCAVCQFVTNVN 128

The following BLAST results are available for this feature:

BLAST of Carg22828 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011533.1	3.9e-124	100.00	Protein LOL1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038887481.1	5.5e-62	78.24	protein LOL1 isoform X1 [Benincasa hispida] >XP_038887482.1 protein LOL1 isoform...	[more]
XP_030457276.1	1.2e-51	67.68	protein LOL1-like [Syzygium oleosum]	[more]
XP_004148490.1	1.5e-51	78.01	protein LOL1 [Cucumis sativus] >XP_011652655.1 protein LOL1 [Cucumis sativus] >X...	[more]
XP_022952054.1	1.5e-51	79.14	protein LOL1-like [Cucurbita moschata] >XP_022952055.1 protein LOL1-like [Cucurb...	[more]

BLAST of Carg22828 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZB1	3.2e-52	74.47	Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1	[more]
Q0J7V9	6.6e-50	72.99	Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1	[more]
Q2QMB3	1.9e-33	53.19	Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1	[more]
Q6ASS2	1.2e-32	52.11	Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1	[more]
P94077	1.4e-31	49.29	Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1	[more]

BLAST of Carg22828 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I7B6	7.3e-52	79.14	protein LOL1-like OS=Cucurbita maxima OX=3661 GN=LOC111470654 PE=4 SV=1	[more]
A0A6J1GKN9	7.3e-52	79.14	protein LOL1-like OS=Cucurbita moschata OX=3662 GN=LOC111454822 PE=4 SV=1	[more]
A0A0A0LEE4	7.3e-52	78.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902960 PE=4 SV=1	[more]
A0A151R086	1.2e-51	75.89	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_042921 PE=4 SV=1	[more]
A0A6J1DRW1	3.6e-51	77.70	protein LOL1 OS=Momordica charantia OX=3673 GN=LOC111022949 PE=4 SV=1	[more]

BLAST of Carg22828 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32540.2	2.2e-53	74.47	lsd one like 1	[more]
AT1G32540.1	2.2e-53	73.61	lsd one like 1	[more]
AT1G32540.3	2.2e-53	74.47	lsd one like 1	[more]
AT4G20380.8	8.9e-34	50.00	LSD1 zinc finger family protein	[more]
AT4G20380.2	9.8e-33	49.29	LSD1 zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005735	Zinc finger, LSD1-type	TIGRFAM	TIGR01053	TIGR01053	coord: 91..120 e-value: 1.7E-14 score: 51.2 coord: 52..82 e-value: 1.9E-12 score: 44.6 coord: 156..185 e-value: 3.2E-11 score: 40.6
IPR005735	Zinc finger, LSD1-type	PFAM	PF06943	zf-LSD1	coord: 159..183 e-value: 1.5E-12 score: 47.1 coord: 94..118 e-value: 2.7E-12 score: 46.3 coord: 55..79 e-value: 1.6E-10 score: 40.6
IPR040319	LSD1-like	PANTHER	PTHR31747	PROTEIN LSD1	coord: 153..192 coord: 47..126
None	No IPR available	PANTHER	PTHR31747:SF1	PROTEIN LOL1	coord: 153..192 coord: 47..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22828-RA	Carg22828-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus