Carg22794 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg22794
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr19: 5554504 .. 5555539 (+)
RNA-Seq ExpressionCarg22794
SyntenyCarg22794
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGAGGAAAGAAAGCAAAGCTCTCACATGAAGATTCAGATTCAGATTTCTGTTTCCAGAACAAAATTTTTGGGGCTGGTTCCTGGAGGAACAACGACCTTATAATATCGACGATTGCCCGACGTGGGCAGGTGTTTATTGGTTGTTCCTAGATAGTTGTGATCTCTTGTTTTAAACAGTGTTAAACACGTAGAACATTTATTACTTACTAGTCACAAACTCAAGTATTGGTCAAAATACCATTTAGATTGATTTGTTTTGTTTTGTTCTCTGTATTTTATTATTGACAGAATCATTTGGCTGTTCATTCTTGATGATGTCCTGTTCTTCATAGTTTCTTTGCATTTGGCGGATGAGCGGGCAGTACTTGTTCTTAGTTTTAGATAATGTTCTGTCTTTTAATAGAATGGATCTTTGCTAGTAAAATATTGAAAGTTTTGTAGCTTATTAGGGAAATAGATGCCTTTTTTAATTCCTTTTTTCATGTATTGAAGAATTTGTCCAATGTTTTTAAATTTCAATGCTTGGACGGTTTTACTTGTCTTGTTCTTCCATTGATTGATGATACTTGCCACCAACTTAACGCCTCTTATTTGAACTCTCTCTATGATACTTTAGGATAAGTGTTTAGGATAACTGTAAGTGTAACGATCCAAACGGGTGGGTATGCTAGGAAAAGGTTTAGGAAAAATGTAACGACCCATTAGTAGATACGTCTTTTCTGGACTTTTTTTCTTGTTGGCTCACTGTCTTGTGTCTTCCCCCATTCGGGGCTCAATAGAGGCTGACACAACACCCGGTATCTATATGTAACGTCCTTGTCGGCTCACCGCCTTGTGTCTTCCCCCATTCAGGGCTCAATGGAGATTGGCACAACACCCGGTATCTAAATGTAACGACCTGAACCTACTTCTAGTCAATTCTGGACTTTTCTTTTAAAATGTGCTAGGAGAAACATTCTTGTTGGCTCACCGCCTTGTGTCTTCTCCCATTCGGGGCTCAATGGAGGCTAGCACAACACCCAATATCTAA

mRNA sequence

ATGGATGGAGGAAAGAAAGCAAAGCTCTCACATGAAGATTCAGATTCAGATTTCTGTTTCCAGAACAAAATTTTTGGGGCTGGTTCCTGGAGGAACAACGACCTTATAATATCGACGATTGCCCGACGTGGGCAGGGCTCAATGGAGATTGGCACAACACCCGGAGAAACATTCTTGTTGGCTCACCGCCTTGTGTCTTCTCCCATTCGGGGCTCAATGGAGGCTAGCACAACACCCAATATCTAA

Coding sequence (CDS)

ATGGATGGAGGAAAGAAAGCAAAGCTCTCACATGAAGATTCAGATTCAGATTTCTGTTTCCAGAACAAAATTTTTGGGGCTGGTTCCTGGAGGAACAACGACCTTATAATATCGACGATTGCCCGACGTGGGCAGGGCTCAATGGAGATTGGCACAACACCCGGAGAAACATTCTTGTTGGCTCACCGCCTTGTGTCTTCTCCCATTCGGGGCTCAATGGAGGCTAGCACAACACCCAATATCTAA

Protein sequence

MDGGKKAKLSHEDSDSDFCFQNKIFGAGSWRNNDLIISTIARRGQGSMEIGTTPGETFLLAHRLVSSPIRGSMEASTTPNI
Homology
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BLAST of Carg22794 vs. NCBI nr
Match: KAG7011567.1 (hypothetical protein SDJN02_26473, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.8 bits (421), Expect = 7.9e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MDGGKKAKLSHEDSDSDFCFQNKIFGAGSWRNNDLIISTIARRGQGSMEIGTTPGETFLL 60
          MDGGKKAKLSHEDSDSDFCFQNKIFGAGSWRNNDLIISTIARRGQGSMEIGTTPGETFLL
Sbjct: 1  MDGGKKAKLSHEDSDSDFCFQNKIFGAGSWRNNDLIISTIARRGQGSMEIGTTPGETFLL 60

Query: 61 AHRLVSSPIRGSMEASTTPNI 82
          AHRLVSSPIRGSMEASTTPNI
Sbjct: 61 AHRLVSSPIRGSMEASTTPNI 81

The following BLAST results are available for this feature:
BLAST of Carg22794 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7011567.17.9e-38100.00hypothetical protein SDJN02_26473, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg22794 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg22794 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg22794 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22794-RACarg22794-RAmRNA