Carg22758 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22758
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic
Location	Carg_Chr18: 123966 .. 125777 (+)
RNA-Seq Expression	Carg22758
Synteny	Carg22758

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTTTACATTTTTCTGTAAATCTGCGCCTCCAAATCACTCTTCATCCTGCAACAGTTCTTCAAGCAGAGCGACAGAGATTGAGAGTGGGCGAGAGTGGCCATGGAAGCTGCGATTTGCGGTCGACTGCCTCTTTCACCCTACCATTTCTTCAATTCCACCAGGCCAGGTATTCACACTTCTACCAATTTGCTCCTCTTAAGTTGCCTATCTCGTTAATCCAAATCTAGATGAAATGTTTTTTTAGAAATTTTTGTTCGTTGTTCAATATTTACCTCATTTCTGGCTTTGTGGACACAGAATCCGCTTATCATGCGCATGTAAGAATGATAATTTTCCAGTTCGTTTGAATTTTATTTTTTCGAAGAGGAAAACTAAGCGTTTGATTATGGGGGAAAACTACAAATTGAAGCAAATCGTGCAGAGAAAATCTGAATCTTCTTGTTTGCATGTCTGTGTGCATCTATGGTGCAGTAGTATAATGCTACTCTTGATTGTTCAGTAAAATCTTGTATATGTGACAACAGCATTCACACAACTCTTATGTCATGGTGAATGAAAATTTCTAAATATAGGGATCAACATGAGATTAGCGAGAAAGCTCAATGACTAAGTAGAAGTTTTAGAAGTTGAATGATCAAAATGAATAGGAAATGTTATTGTTTAGCTACCAAAATAATAGTTTGATCTTCTAGTTCTCTTTCTTTTACTTCAATCTATATTATTGCTGAAAGTCCAGAAATTTTAGAACTTGAACTTGCATGAGATGTTTATTGAGTATTAGACATTTATAATTGGTATTTGTGTGATAGGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGCATCTTAACGATGCTATCAGTTGCTGAGCTCGGAAAAGGTGGAGGATTGTTAGAAAAGCCAGCCACAGAGAAGACAACACCTGGCCGCGAATCTGAGTTTAATGTTAGGTATAAAACAATTCTCCTCCTCTGAATGTCTGTCGCGTATATGAGCAAGTAAAGATCTGTATGCATTTGGGAACTCGAGAGCTGAGCTTCCAATACAATTTTGATGTTCAGGAAATCAAGGAAAATAGCTCCACCTTACCGAGTGTTGCTACACAACGACAATCACAATAAGCGGGAATATGTAGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACAGTTGACAATGCAGTCAACATAATGCAGGAGGCGCATTACAATGGGATGGCAGTGGTAATTATCTGCGCCCAAGTGGATGCAGAAGATCACTGTATGCAGCTGAGAGGCAATGGTCTTCTTAGTTCAATTGAGCCTGCAAGCGAAGGTTGTTGAATAGGGAGAAGAGATTATGTAATGTACTCTCTTCTGCCCATATTAAAATATATTGAATGTCATCAACTGCTACAAAATTATGTACATAATAGAGATACTTCATAAAGAAATAAACTTCAATTTACGAATGCATGCTCATTCACTCCGGTTTCACTATTCTGTTAGTAGTACGCAGTTTTTAAGTGAATATGTGCTGTTTTCCTCCTCACCCACCCCATATCCCATACATACATTAAGGAGAATTGTAAGAGTGGGGGAGGTTTTGCAGGCCTCTTTGTTCTCTCTGTTACTTAGATTGGGACAACTCCAATAAGTTCAAGAATTATATTTCATATAGATTGAGCCTTCAAGAGCTGAAACTCTGCCTTCTGCCTTCCCACAAAGTTTCCAGCTCCACTCCTAGTTATGGAAATAGCTTAGAACGGTTGGGATCTATCGATCTATCTATTTATCTAGATGGAGGGTAAAGAAAGTCAACATT

mRNA sequence

CGTTTACATTTTTCTGTAAATCTGCGCCTCCAAATCACTCTTCATCCTGCAACAGTTCTTCAAGCAGAGCGACAGAGATTGAGAGTGGGCGAGAGTGGCCATGGAAGCTGCGATTTGCGGTCGACTGCCTCTTTCACCCTACCATTTCTTCAATTCCACCAGGCCAGAATCCGCTTATCATGCGCATGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGCATCTTAACGATGCTATCAGTTGCTGAGCTCGGAAAAGGTGGAGGATTGTTAGAAAAGCCAGCCACAGAGAAGACAACACCTGGCCGCGAATCTGAGTTTAATGTTAGGAAATCAAGGAAAATAGCTCCACCTTACCGAGTGTTGCTACACAACGACAATCACAATAAGCGGGAATATGTAGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACAGTTGACAATGCAGTCAACATAATGCAGGAGGCGCATTACAATGGGATGGCAGTGGTAATTATCTGCGCCCAAGTGGATGCAGAAGATCACTGTATGCAGCTGAGAGGCAATGGTCTTCTTAGTTCAATTGAGCCTGCAAGCGAAGGTTGTTGAATAGGGAGAAGAGATTATGTAATGTACTCTCTTCTGCCCATATTAAAATATATTGAATGTCATCAACTGCTACAAAATTATGTACATAATAGAGATACTTCATAAAGAAATAAACTTCAATTTACGAATGCATGCTCATTCACTCCGGTTTCACTATTCTGTTAGTAGTACGCAGTTTTTAAGTGAATATGTGCTGTTTTCCTCCTCACCCACCCCATATCCCATACATACATTAAGGAGAATTGTAAGAGTGGGGGAGGTTTTGCAGGCCTCTTTGTTCTCTCTGTTACTTAGATTGGGACAACTCCAATAAGTTCAAGAATTATATTTCATATAGATTGAGCCTTCAAGAGCTGAAACTCTGCCTTCTGCCTTCCCACAAAGTTTCCAGCTCCACTCCTAGTTATGGAAATAGCTTAGAACGGTTGGGATCTATCGATCTATCTATTTATCTAGATGGAGGGTAAAGAAAGTCAACATT

Coding sequence (CDS)

CGTTTACATTTTTCTGTAAATCTGCGCCTCCAAATCACTCTTCATCCTGCAACAGTTCTTCAAGCAGAGCGACAGAGATTGAGAGTGGGCGAGAGTGGCCATGGAAGCTGCGATTTGCGGTCGACTGCCTCTTTCACCCTACCATTTCTTCAATTCCACCAGGCCAGAATCCGCTTATCATGCGCATGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGCATCTTAACGATGCTATCAGTTGCTGAGCTCGGAAAAGGTGGAGGATTGTTAGAAAAGCCAGCCACAGAGAAGACAACACCTGGCCGCGAATCTGAGTTTAATGTTAGGAAATCAAGGAAAATAGCTCCACCTTACCGAGTGTTGCTACACAACGACAATCACAATAAGCGGGAATATGTAGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACAGTTGACAATGCAGTCAACATAATGCAGGAGGCGCATTACAATGGGATGGCAGTGGTAATTATCTGCGCCCAAGTGGATGCAGAAGATCACTGTATGCAGCTGAGAGGCAATGGTCTTCTTAGTTCAATTGAGCCTGCAAGCGAAGGTTGTTGA

Protein sequence

RLHFSVNLRLQITLHPATVLQAERQRLRVGESGHGSCDLRSTASFTLPFLQFHQARIRLSCAWDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEKTTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASEGC

Homology

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BLAST of Carg22758 vs. NCBI nr
Match: KAG7012114.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 402.5 bits (1033), Expect = 2.1e-108
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   RLHFSVNLRLQITLHPATVLQAERQRLRVGESGHGSCDLRSTASFTLPFLQFHQARIRLS 60
           RLHFSVNLRLQITLHPATVLQAERQRLRVGESGHGSCDLRSTASFTLPFLQFHQARIRLS
Sbjct: 1   RLHFSVNLRLQITLHPATVLQAERQRLRVGESGHGSCDLRSTASFTLPFLQFHQARIRLS 60

Query: 61  CAWDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEKTTPGRESEFNVRKSRKIAPP 120
           CAWDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEKTTPGRESEFNVRKSRKIAPP
Sbjct: 61  CAWDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEKTTPGRESEFNVRKSRKIAPP 120

Query: 121 YRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCM 180
           YRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCM
Sbjct: 121 YRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCM 180

Query: 181 QLRGNGLLSSIEPASEGC 199
           QLRGNGLLSSIEPASEGC
Sbjct: 181 QLRGNGLLSSIEPASEGC 198

[Close]

BLAST of Carg22758 vs. NCBI nr
Match: XP_022954871.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucurbita moschata] >XP_023541586.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275.0 bits (702), Expect = 5.0e-70
Identity = 134/135 (99.26%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 64  DKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEKTTPGRESEFNVRKSRKIAPPYRV 123
           DKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEKTTPGRESEFNVRKSRKIAPPYRV
Sbjct: 24  DKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEKTTPGRESEFNVRKSRKIAPPYRV 83

Query: 124 LLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLR 183
           LLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLR
Sbjct: 84  LLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLR 143

Query: 184 GNGLLSSIEPASEGC 199
           GNGLLSSIEPAS+GC
Sbjct: 144 GNGLLSSIEPASDGC 158

[Close]

BLAST of Carg22758 vs. NCBI nr
Match: XP_022994956.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 273.5 bits (698), Expect = 1.5e-69
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 64  DKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEKTTPGRESEFNVRKSRKIAPPYRV 123
           DKYYFHKQCRNRSILTMLSVAELGKGGGLLEKP TEKTTPGRESEFNVRKSRKIAPPYRV
Sbjct: 24  DKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPTTEKTTPGRESEFNVRKSRKIAPPYRV 83

Query: 124 LLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLR 183
           LLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLR
Sbjct: 84  LLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLR 143

Query: 184 GNGLLSSIEPASEGC 199
           GNGLLSSIEPAS+GC
Sbjct: 144 GNGLLSSIEPASDGC 158

[Close]

BLAST of Carg22758 vs. NCBI nr
Match: KAG6572932.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 270.4 bits (690), Expect = 1.2e-68
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 64  DKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEKTTPGRESEFNVRKSRKIAPPYRV 123
           DKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEKTTPGRESEFNVRKSRKIAPPYRV
Sbjct: 24  DKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEKTTPGRESEFNVRKSRKIAPPYRV 83

Query: 124 LLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLR 183
           LLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLR
Sbjct: 84  LLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLR 143

Query: 184 GNGLLSSIEPASE 197
           GNGLLSSIEPASE
Sbjct: 144 GNGLLSSIEPASE 156

[Close]

BLAST of Carg22758 vs. NCBI nr
Match: XP_023000891.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 265.8 bits (678), Expect = 3.0e-67
Identity = 141/198 (71.21%), Postives = 157/198 (79.29%), Query Frame = 0


Query: 1   RLHFSVNLRLQITLHPATVLQAERQRLRVGESGHGSCDLRSTASFTLPFLQFHQARIRLS 60
           RL FSVNL  QITLHP+TV       LR G      C   S +    P+  F+  R    
Sbjct: 8   RLQFSVNLLHQITLHPSTV-------LREGAMEAAICGRVSIS----PYHFFNPTR---- 67

Query: 61  CAWDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEKTTPGRESEFNVRKSRKIAPP 120
            + DKYYFHK CR+RSIL MLSVA LG+GGGLL+KP  EKTTPGRESEF+VRKSRKIAPP
Sbjct: 68  -SGDKYYFHKPCRHRSILMMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPP 127

Query: 121 YRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCM 180
           Y+VLLHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAH+NGM+VVI+CAQVDAEDHCM
Sbjct: 128 YQVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCM 187

Query: 181 QLRGNGLLSSIEPASEGC 199
           QLRGNGL SSIEPAS+GC
Sbjct: 188 QLRGNGLQSSIEPASDGC 189

[Close]

BLAST of Carg22758 vs. ExPASy Swiss-Prot
Match: Q9SX29 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPLS1 PE=1 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 8.9e-54
Identity = 107/137 (78.10%), Postives = 117/137 (85.40%), Query Frame = 0


Query: 64  DKYYFHK-QCRNRSILTMLSV-AELGKGGGLLEKPATEKTTPGRESEFNVRKSRKIAPPY 123
           DK+   K  C NRSIL  LS  A LGKGGG+L+KP  EKTTPGRESEF++RKS+KIAPPY
Sbjct: 23  DKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIEKTTPGRESEFDLRKSKKIAPPY 82

Query: 124 RVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQ 183
           RV+LHNDN NKREYVVQVLMKVIPGMTVDNAVNIMQEAH NG+AVVI+CAQ DAE HCMQ
Sbjct: 83  RVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQEAHINGLAVVIVCAQADAEQHCMQ 142

Query: 184 LRGNGLLSSIEPASEGC 199
           LRGNGLLSS+EP   GC
Sbjct: 143 LRGNGLLSSVEPDGGGC 159

[Close]

BLAST of Carg22758 vs. ExPASy Swiss-Prot
Match: A0A2K3CNL6 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CLPS1 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.3e-22
Identity = 56/109 (51.38%), Postives = 76/109 (69.72%), Query Frame = 0


Query: 90  GGLLEKPATEKTTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTV 149
           GG+++ P T      ++    V +S+K  P Y+VLLHNDN+NKREYVV+VL+KV+  +TV
Sbjct: 61  GGVMDAPTTT-----QQPASGVERSQKRPPIYKVLLHNDNYNKREYVVKVLLKVVEQITV 120

Query: 150 DNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASEGC 199
           D+AV  MQEAH  G+A+V+ C Q +AE +C  LR NGL S+IEP   GC
Sbjct: 121 DDAVTCMQEAHETGVALVVACPQDNAERYCEGLRLNGLTSTIEPG--GC 162

[Close]

BLAST of Carg22758 vs. ExPASy Swiss-Prot
Match: Q31QE7 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpS PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.5e-18
Identity = 47/79 (59.49%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 115 RKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVD 174
           RKIAP YRVLLHND+ N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 175 AEDHCMQLRGNGLLSSIEP 194
           AE +C QL+ +GL SSIEP
Sbjct: 75  AEFYCEQLKSHGLSSSIEP 93

[Close]

BLAST of Carg22758 vs. ExPASy Swiss-Prot
Match: Q5N3U1 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=clpS PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-15
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 115 RKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVD 174
           RKIAP YRVLLHND+ N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 175 AEDHCMQLRGNGL 188
           AE +C QL+ +GL
Sbjct: 75  AEFYCEQLKSHGL 87

[Close]

BLAST of Carg22758 vs. ExPASy Swiss-Prot
Match: Q7NML9 (ATP-dependent Clp protease adapter protein ClpS OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX=251221 GN=clpS PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.8e-13
Identity = 43/84 (51.19%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 112 RKS--RKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVII 171
           RKS  RK  P Y+VLLHND+H    YV++VLMK IP M    A  IM EAH  G+AVVI+
Sbjct: 8   RKSVQRKPMPLYKVLLHNDDHTPMNYVIEVLMKTIPKMQPSKARKIMLEAHNGGVAVVIV 67

Query: 172 CAQVDAEDHCMQLRGNGLLSSIEP 194
           CA   AE +   L  + L S+ EP
Sbjct: 68  CALEHAEFYSESLNRHNLTSTYEP 91

[Close]

BLAST of Carg22758 vs. ExPASy TrEMBL
Match: A0A6J1GS56 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457001 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.4e-70
Identity = 134/135 (99.26%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 64  DKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEKTTPGRESEFNVRKSRKIAPPYRV 123
           DKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEKTTPGRESEFNVRKSRKIAPPYRV
Sbjct: 24  DKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEKTTPGRESEFNVRKSRKIAPPYRV 83

Query: 124 LLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLR 183
           LLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLR
Sbjct: 84  LLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLR 143

Query: 184 GNGLLSSIEPASEGC 199
           GNGLLSSIEPAS+GC
Sbjct: 144 GNGLLSSIEPASDGC 158

[Close]

BLAST of Carg22758 vs. ExPASy TrEMBL
Match: A0A6J1K0P0 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111490541 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 7.1e-70
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 64  DKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEKTTPGRESEFNVRKSRKIAPPYRV 123
           DKYYFHKQCRNRSILTMLSVAELGKGGGLLEKP TEKTTPGRESEFNVRKSRKIAPPYRV
Sbjct: 24  DKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPTTEKTTPGRESEFNVRKSRKIAPPYRV 83

Query: 124 LLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLR 183
           LLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLR
Sbjct: 84  LLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLR 143

Query: 184 GNGLLSSIEPASEGC 199
           GNGLLSSIEPAS+GC
Sbjct: 144 GNGLLSSIEPASDGC 158

[Close]

BLAST of Carg22758 vs. ExPASy TrEMBL
Match: A0A6J1KH35 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111495194 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.5e-67
Identity = 141/198 (71.21%), Postives = 157/198 (79.29%), Query Frame = 0


Query: 1   RLHFSVNLRLQITLHPATVLQAERQRLRVGESGHGSCDLRSTASFTLPFLQFHQARIRLS 60
           RL FSVNL  QITLHP+TV       LR G      C   S +    P+  F+  R    
Sbjct: 8   RLQFSVNLLHQITLHPSTV-------LREGAMEAAICGRVSIS----PYHFFNPTR---- 67

Query: 61  CAWDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEKTTPGRESEFNVRKSRKIAPP 120
            + DKYYFHK CR+RSIL MLSVA LG+GGGLL+KP  EKTTPGRESEF+VRKSRKIAPP
Sbjct: 68  -SGDKYYFHKPCRHRSILMMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPP 127

Query: 121 YRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCM 180
           Y+VLLHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAH+NGM+VVI+CAQVDAEDHCM
Sbjct: 128 YQVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCM 187

Query: 181 QLRGNGLLSSIEPASEGC 199
           QLRGNGL SSIEPAS+GC
Sbjct: 188 QLRGNGLQSSIEPASDGC 189

[Close]

BLAST of Carg22758 vs. ExPASy TrEMBL
Match: A0A6J1C6X4 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008549 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 9.5e-67
Identity = 141/198 (71.21%), Postives = 151/198 (76.26%), Query Frame = 0


Query: 1   RLHFSVNLRLQITLHPATVLQAERQRLRVGESGHGSCDLRSTASFTLPFLQFHQARIRLS 60
           RLHF  NL  QITLH               E G+GSC+LRS+ SFT P LQ ++      
Sbjct: 15  RLHFFWNLLPQITLH----------SFNHTERGYGSCNLRSSTSFTQPLLQSNET----- 74

Query: 61  CAWDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEKTTPGRESEFNVRKSRKIAPP 120
                       RNRS L MLSVAELGKGGGLLEKP  EKTTPGRESEF+VRKSRK APP
Sbjct: 75  ------------RNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPP 134

Query: 121 YRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCM 180
           YRVLLHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGM+VVIICAQVDAEDHCM
Sbjct: 135 YRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVIICAQVDAEDHCM 185

Query: 181 QLRGNGLLSSIEPASEGC 199
           QLRGNGLLSSIEPAS+GC
Sbjct: 195 QLRGNGLLSSIEPASDGC 185

[Close]

BLAST of Carg22758 vs. ExPASy TrEMBL
Match: A0A6J1EDN1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111431582 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.7e-66
Identity = 138/198 (69.70%), Postives = 156/198 (78.79%), Query Frame = 0


Query: 1   RLHFSVNLRLQITLHPATVLQAERQRLRVGESGHGSCDLRSTASFTLPFLQFHQARIRLS 60
           RL FSVNL  QITLHP+TVL+A                + +     +P   +H   +  +
Sbjct: 8   RLQFSVNLLHQITLHPSTVLRAGA--------------MEAAICGRVPISPYH--FLNPT 67

Query: 61  CAWDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEKTTPGRESEFNVRKSRKIAPP 120
              DKYYFHK CRNRSIL MLSVA LG+GGGLL+KP  +KTTPGRESEF+VRKSRKIAPP
Sbjct: 68  RPGDKYYFHKPCRNRSIL-MLSVAALGRGGGLLDKPTIDKTTPGRESEFDVRKSRKIAPP 127

Query: 121 YRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCM 180
           Y+VLLHNDN+NKREYVVQVLMKVIPGMTVDNAVNIMQEAH+NGM+VVI+CAQVDAEDHCM
Sbjct: 128 YQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCM 187

Query: 181 QLRGNGLLSSIEPASEGC 199
           QLRGNGL SSIEPAS+GC
Sbjct: 188 QLRGNGLQSSIEPASDGC 188

[Close]

BLAST of Carg22758 vs. TAIR 10
Match: AT1G68660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 211.5 bits (537), Expect = 6.3e-55
Identity = 107/137 (78.10%), Postives = 117/137 (85.40%), Query Frame = 0


Query: 64  DKYYFHK-QCRNRSILTMLSV-AELGKGGGLLEKPATEKTTPGRESEFNVRKSRKIAPPY 123
           DK+   K  C NRSIL  LS  A LGKGGG+L+KP  EKTTPGRESEF++RKS+KIAPPY
Sbjct: 23  DKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIEKTTPGRESEFDLRKSKKIAPPY 82

Query: 124 RVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQ 183
           RV+LHNDN NKREYVVQVLMKVIPGMTVDNAVNIMQEAH NG+AVVI+CAQ DAE HCMQ
Sbjct: 83  RVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQEAHINGLAVVIVCAQADAEQHCMQ 142

Query: 184 LRGNGLLSSIEPASEGC 199
           LRGNGLLSS+EP   GC
Sbjct: 143 LRGNGLLSSVEPDGGGC 159

[Close]

BLAST of Carg22758 vs. TAIR 10
Match: AT1G68660.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 141.7 bits (356), Expect = 6.2e-34
Identity = 80/137 (58.39%), Postives = 88/137 (64.23%), Query Frame = 0


Query: 64  DKYYFHK-QCRNRSILTMLSV-AELGKGGGLLEKPATEKTTPGRESEFNVRKSRKIAPPY 123
           DK+   K  C NRSIL  LS  A LGKGGG+L+KP  EKTTPGRESEF++RKS+KIAPPY
Sbjct: 23  DKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIEKTTPGRESEFDLRKSKKIAPPY 82

Query: 124 RVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQ 183
           RV+LHNDN NKREYVVQVLMK                               DAE HCMQ
Sbjct: 83  RVILHNDNFNKREYVVQVLMK------------------------------ADAEQHCMQ 129

Query: 184 LRGNGLLSSIEPASEGC 199
           LRGNGLLSS+EP   GC
Sbjct: 143 LRGNGLLSSVEPDGGGC 129

The following BLAST results are available for this feature:

BLAST of Carg22758 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012114.1	2.1e-108	100.00	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic, partial [Cucurb...	[more]
XP_022954871.1	5.0e-70	99.26	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucurbita mosch...	[more]
XP_022994956.1	1.5e-69	98.52	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita ...	[more]
KAG6572932.1	1.2e-68	100.00	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic, partial [Cucurb...	[more]
XP_023000891.1	3.0e-67	71.21	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita ...	[more]

BLAST of Carg22758 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SX29	8.9e-54	78.10	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis t...	[more]
A0A2K3CNL6	5.3e-22	51.38	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas...	[more]
Q31QE7	3.5e-18	59.49	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (stra...	[more]
Q5N3U1	1.6e-15	57.53	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATC...	[more]
Q7NML9	5.8e-13	51.19	ATP-dependent Clp protease adapter protein ClpS OS=Gloeobacter violaceus (strain...	[more]

BLAST of Carg22758 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GS56	2.4e-70	99.26	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Cucurbita mos...	[more]
A0A6J1K0P0	7.1e-70	98.52	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbit...	[more]
A0A6J1KH35	1.5e-67	71.21	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbit...	[more]
A0A6J1C6X4	9.5e-67	71.21	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 ...	[more]
A0A6J1EDN1	4.7e-66	69.70	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbit...	[more]

BLAST of Carg22758 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68660.1	6.3e-55	78.10	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT1G68660.2	6.2e-34	58.39	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 116..193 e-value: 1.6E-20 score: 74.8
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 115..193
IPR003769	Adaptor protein ClpS, core	PFAM	PF02617	ClpS	coord: 118..184 e-value: 9.6E-18 score: 63.8
None	No IPR available	PANTHER	PTHR33473:SF14	ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS	coord: 56..198
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	PANTHER	PTHR33473	ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC	coord: 56..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22758-RA	Carg22758-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030163	protein catabolic process
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008233	peptidase activity