Carg22752 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22752
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like
Location	Carg_Chr18: 150505 .. 151544 (-)
RNA-Seq Expression	Carg22752
Synteny	Carg22752

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGGAAGAAGACAGTGGAGTTCGATGAATCACCACCGGACGATTTCGATGCGGAGCATCCGTACAAGGATCCAGTGGCGATGCTGGAGATGAGGGAACATATTGTGAGAGAGAAATGGATCGAAATCGAAAAGGCGAAGATACTGAGGGAAAAACTAAGATGGTGCTACCGCATCGAAGGAGTCAACCATCTTCAGAAATGCCGCCACCTTGTTCAGCAATACCTTGATTCCACTCGCGGCATCGGTTGGGGCAAGGATGGACGCCACCCATCTCTTCATGGTTCTCTCTTTTAGTCACTCATTCTATTTAATTTCCAAGAAGTTTGGATGTTTTTTGGACTTTTATTTGCCGTTTGGGTAGAAAGTGGAGATATTTCGAGTAACTGAAAGTAGGTTATGATTGGGTCTGGTATTAACCGTGGCACTTTGCTCTGATTTTGAAGTGTTGTTTTCTATAATATTTCTTGCTCTGATTTTTTTTCTTTTCTTTTTCTCCATCATGTTCCCTATGCAATTTAACTGACTTGAGTGAATGAAGTATAAATCATCTGATGTTGTCTCTTCTTGCTCTGGTTAGGTCCTAAAGTGGAGGCGGTCGAAGCTGAGTAAATTTCTGGGAGGAATAACGGTGAGTTTAAATGTTCCTAAGTTGTTAGGTTATTACTTGGTCTTACTGATTATCAAACTTTATTTGTTTCAGAGATTGAATAAAAGAACGATGAATATTAGCCCTTTATTTTATTTCGTGTACTGCTACGAGGGGTGTAAAGAATTTTGAACTCAGATCAATGGTCAATAATTCCTTTTAATTTCCATTTCTATGTTGTTTGAGAACTTTGTAGCAATTTACAGTAAGGTTTCCTAAAATTTTTCTCACTAGTGGTTTGATTTTGAGAATGATTGAATTTTTTTTTCACAAGGCATTCAATCATAGTTCTTTCAAGCGTATGTATAAGACCTGACATTAACAGTGTGATGGGTGGGGGTGGGGGCCGTTGAAGCTGTATATACCTTTGTTGATGTTGTCTCATAAT

mRNA sequence

ATGGGGAGGAAGAAGACAGTGGAGTTCGATGAATCACCACCGGACGATTTCGATGCGGAGCATCCGTACAAGGATCCAGTGGCGATGCTGGAGATGAGGGAACATATTGTGAGAGAGAAATGGATCGAAATCGAAAAGGCGAAGATACTGAGGGAAAAACTAAGATGGTGCTACCGCATCGAAGGAGTCAACCATCTTCAGAAATGCCGCCACCTTGTTCAGCAATACCTTGATTCCACTCGCGGCATCGGTTGGGGCAAGGATGGACGCCACCCATCTCTTCATGGTCCTAAAGTGGAGGCGGTCGAAGCTGAGTAAATTTCTGGGAGGAATAACGGTGAGTTTAAATGTTCCTAAGTTGTTAGGTTATTACTTGGTCTTACTGATTATCAAACTTTATTTGTTTCAGAGATTGAATAAAAGAACGATGAATATTAGCCCTTTATTTTATTTCGTGTACTGCTACGAGGGGTGTAAAGAATTTTGAACTCAGATCAATGGTCAATAATTCCTTTTAATTTCCATTTCTATGTTGTTTGAGAACTTTGTAGCAATTTACAGTAAGGTTTCCTAAAATTTTTCTCACTAGTGGTTTGATTTTGAGAATGATTGAATTTTTTTTTCACAAGGCATTCAATCATAGTTCTTTCAAGCGTATGTATAAGACCTGACATTAACAGTGTGATGGGTGGGGGTGGGGGCCGTTGAAGCTGTATATACCTTTGTTGATGTTGTCTCATAAT

Coding sequence (CDS)

ATGGGGAGGAAGAAGACAGTGGAGTTCGATGAATCACCACCGGACGATTTCGATGCGGAGCATCCGTACAAGGATCCAGTGGCGATGCTGGAGATGAGGGAACATATTGTGAGAGAGAAATGGATCGAAATCGAAAAGGCGAAGATACTGAGGGAAAAACTAAGATGGTGCTACCGCATCGAAGGAGTCAACCATCTTCAGAAATGCCGCCACCTTGTTCAGCAATACCTTGATTCCACTCGCGGCATCGGTTGGGGCAAGGATGGACGCCACCCATCTCTTCATGGTCCTAAAGTGGAGGCGGTCGAAGCTGAGTAA

Protein sequence

MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRIEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE

Homology

[Close]

BLAST of Carg22752 vs. NCBI nr
Match: XP_022954577.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita moschata] >XP_022954578.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita moschata] >XP_022954579.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita moschata] >KAG7012120.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 225.3 bits (573), Expect = 2.4e-55
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 105

[Close]

BLAST of Carg22752 vs. NCBI nr
Match: XP_022994087.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita maxima] >XP_022994089.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita maxima] >XP_022994090.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita maxima] >XP_022994091.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita maxima] >XP_022994092.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita maxima])

HSP 1 Score: 224.2 bits (570), Expect = 5.4e-55
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWI+IEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 105

[Close]

BLAST of Carg22752 vs. NCBI nr
Match: XP_022924082.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucurbita moschata] >XP_023001015.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucurbita maxima] >XP_023519758.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucurbita pepo subsp. pepo] >XP_023519759.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucurbita pepo subsp. pepo] >KAG7019947.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 221.1 bits (562), Expect = 4.5e-54
Identity = 102/105 (97.14%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFD EHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVE+VE+E
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE 105

[Close]

BLAST of Carg22752 vs. NCBI nr
Match: XP_038894613.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Benincasa hispida] >XP_038894614.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Benincasa hispida] >XP_038894615.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Benincasa hispida])

HSP 1 Score: 219.5 bits (558), Expect = 1.3e-53
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFD EHPYKDPVAMLEMREHIVREKWI+IEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEA E+E
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAAESE 105

[Close]

BLAST of Carg22752 vs. NCBI nr
Match: XP_022137450.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Momordica charantia] >XP_022137451.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Momordica charantia])

HSP 1 Score: 213.4 bits (542), Expect = 9.5e-52
Identity = 98/105 (93.33%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGR+KTVEFDESPPDDFDAE+PYKDPVAMLEMREHIVREKWI+IEKAKILRE+LRWCYRI
Sbjct: 1   MGRRKTVEFDESPPDDFDAENPYKDPVAMLEMREHIVREKWIDIEKAKILRERLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVE  E+E
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPGESE 105

[Close]

BLAST of Carg22752 vs. ExPASy Swiss-Prot
Match: Q94C12 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Arabidopsis thaliana OX=3702 GN=At3g18410 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 6.2e-46
Identity = 87/106 (82.08%), Postives = 96/106 (90.57%), Query Frame = 0


Query: 1   MGRKKTV-EFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYR 60
           MGRKK + EF+ES PD FD E+PYKDPVAM+EMREHIVREKWI+IEKAKILREK++WCYR
Sbjct: 1   MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIQIEKAKILREKVKWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 106
           +EGVNH QKCRHLVQQYLDSTRG+GWGKD R  SLHGPK EAVEAE
Sbjct: 61  VEGVNHYQKCRHLVQQYLDSTRGVGWGKDHRPISLHGPKPEAVEAE 106

[Close]

BLAST of Carg22752 vs. ExPASy Swiss-Prot
Match: Q9M9B4 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-A OS=Arabidopsis thaliana OX=3702 GN=At1g49140 PE=1 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.7e-43
Identity = 83/104 (79.81%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MGRKKTV-EFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYR 60
           MGRKK + EF+ES PD FD E+PYKDPVAM+EMREHIVREKWI IEKAKILREK++WCYR
Sbjct: 1   MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIHIEKAKILREKVKWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVE 104
           +EGVNH QKCRHLVQQYLD+TRG+GWGKD R  SLHGPK  AVE
Sbjct: 61  VEGVNHYQKCRHLVQQYLDATRGVGWGKDHRPISLHGPKPVAVE 104

[Close]

BLAST of Carg22752 vs. ExPASy Swiss-Prot
Match: Q03015 (NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=nuo-12.3 PE=3 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-07
Identity = 26/64 (40.62%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 14 PDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRIEGVNHLQKCRHLV 73
          P  FD    Y D   + + ++ I+RE+W+ +   +++RE+L  CY  EGVNHL+KC HL 
Sbjct: 17 PPTFDGV-DYNDTKRLKQAQDAIIREQWVRVMMGRLVREELSKCYYREGVNHLEKCGHLR 76

Query: 74 QQYL 78
          ++YL
Sbjct: 77 ERYL 79

[Close]

BLAST of Carg22752 vs. ExPASy TrEMBL
Match: A0A6J1GRC0 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like OS=Cucurbita moschata OX=3662 GN=LOC111456807 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.2e-55
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 105

[Close]

BLAST of Carg22752 vs. ExPASy TrEMBL
Match: A0A6J1JUQ8 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like OS=Cucurbita maxima OX=3661 GN=LOC111489918 PE=3 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 2.6e-55
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWI+IEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 105

[Close]

BLAST of Carg22752 vs. ExPASy TrEMBL
Match: A0A6J1KJX6 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Cucurbita maxima OX=3661 GN=LOC111495279 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.2e-54
Identity = 102/105 (97.14%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFD EHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVE+VE+E
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE 105

[Close]

BLAST of Carg22752 vs. ExPASy TrEMBL
Match: A0A6J1E7Z3 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Cucurbita moschata OX=3662 GN=LOC111431621 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.2e-54
Identity = 102/105 (97.14%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFD EHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVE+VE+E
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE 105

[Close]

BLAST of Carg22752 vs. ExPASy TrEMBL
Match: A0A6J1C6P3 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Momordica charantia OX=3673 GN=LOC111008891 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 4.6e-52
Identity = 98/105 (93.33%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGR+KTVEFDESPPDDFDAE+PYKDPVAMLEMREHIVREKWI+IEKAKILRE+LRWCYRI
Sbjct: 1   MGRRKTVEFDESPPDDFDAENPYKDPVAMLEMREHIVREKWIDIEKAKILRERLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVE  E+E
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPGESE 105

[Close]

BLAST of Carg22752 vs. TAIR 10
Match: AT3G18410.1 (Complex I subunit NDUFS6 )

HSP 1 Score: 184.5 bits (467), Expect = 4.4e-47
Identity = 87/106 (82.08%), Postives = 96/106 (90.57%), Query Frame = 0


Query: 1   MGRKKTV-EFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYR 60
           MGRKK + EF+ES PD FD E+PYKDPVAM+EMREHIVREKWI+IEKAKILREK++WCYR
Sbjct: 1   MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIQIEKAKILREKVKWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 106
           +EGVNH QKCRHLVQQYLDSTRG+GWGKD R  SLHGPK EAVEAE
Sbjct: 61  VEGVNHYQKCRHLVQQYLDSTRGVGWGKDHRPISLHGPKPEAVEAE 106

[Close]

BLAST of Carg22752 vs. TAIR 10
Match: AT3G18410.2 (Complex I subunit NDUFS6 )

HSP 1 Score: 184.5 bits (467), Expect = 4.4e-47
Identity = 87/106 (82.08%), Postives = 96/106 (90.57%), Query Frame = 0


Query: 1   MGRKKTV-EFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYR 60
           MGRKK + EF+ES PD FD E+PYKDPVAM+EMREHIVREKWI+IEKAKILREK++WCYR
Sbjct: 1   MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIQIEKAKILREKVKWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 106
           +EGVNH QKCRHLVQQYLDSTRG+GWGKD R  SLHGPK EAVEAE
Sbjct: 61  VEGVNHYQKCRHLVQQYLDSTRGVGWGKDHRPISLHGPKPEAVEAE 106

[Close]

BLAST of Carg22752 vs. TAIR 10
Match: AT1G49140.1 (Complex I subunit NDUFS6 )

HSP 1 Score: 176.4 bits (446), Expect = 1.2e-44
Identity = 83/104 (79.81%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MGRKKTV-EFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYR 60
           MGRKK + EF+ES PD FD E+PYKDPVAM+EMREHIVREKWI IEKAKILREK++WCYR
Sbjct: 1   MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIHIEKAKILREKVKWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVE 104
           +EGVNH QKCRHLVQQYLD+TRG+GWGKD R  SLHGPK  AVE
Sbjct: 61  VEGVNHYQKCRHLVQQYLDATRGVGWGKDHRPISLHGPKPVAVE 104

The following BLAST results are available for this feature:

BLAST of Carg22752 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954577.1	2.4e-55	100.00	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita m...	[more]
XP_022994087.1	5.4e-55	99.05	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita m...	[more]
XP_022924082.1	4.5e-54	97.14	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucurbita moscha...	[more]
XP_038894613.1	1.3e-53	96.19	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Benincasa hispid...	[more]
XP_022137450.1	9.5e-52	93.33	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Momordica charan...	[more]

BLAST of Carg22752 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94C12	6.2e-46	82.08	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Arabidopsis th...	[more]
Q9M9B4	1.7e-43	79.81	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-A OS=Arabidopsis th...	[more]
Q03015	1.5e-07	40.63	NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial OS=Neurospora crass...	[more]

BLAST of Carg22752 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GRC0	1.2e-55	100.00	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like OS=Cucurbita...	[more]
A0A6J1JUQ8	2.6e-55	99.05	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like OS=Cucurbita...	[more]
A0A6J1KJX6	2.2e-54	97.14	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Cucurbita maxi...	[more]
A0A6J1E7Z3	2.2e-54	97.14	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Cucurbita mosc...	[more]
A0A6J1C6P3	4.6e-52	93.33	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Momordica char...	[more]

BLAST of Carg22752 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18410.1	4.4e-47	82.08	Complex I subunit NDUFS6	[more]
AT3G18410.2	4.4e-47	82.08	Complex I subunit NDUFS6	[more]
AT1G49140.1	1.2e-44	79.81	Complex I subunit NDUFS6	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019377	NADH-ubiquinone oxidoreductase, subunit 10	PFAM	PF10249	NDUFB10	coord: 24..80 e-value: 1.5E-4 score: 22.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR13094:SF3	BNAA01G26750D PROTEIN	coord: 1..105
IPR039993	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10	PANTHER	PTHR13094	NADH-UBIQUINONE OXIDOREDUCTASE PDSW SUBUNIT	coord: 1..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22752-RA	Carg22752-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005747	mitochondrial respiratory chain complex I