Carg22731 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22731
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr11: 5059311 .. 5062871 (+)
RNA-Seq Expression	Carg22731
Synteny	Carg22731

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATGTTCAGGCTAGCAAACGCCATATTGTCCCACTAGTACTTTATGATAGTGCGTCTCAACCTAAGACGTTGTCACTCACTACACAAGTCAAAAAAATAGAAATGGTGAGATTTAAATTAGAGATGCTCGAAACTTTGAGGCACCCTAGTTGTTCTGACTCGAACTTCCTAGAGTCTAGAGTTAAGCATGTGGATACTTACTAAGTTAAGTGTAACGACCCAGGCCCACCGCTAGCAGATATTGTCTTCTTTGAACTTTCCCTTTCGGGCTTCGCTTCAAGGCTTTAAAATGCGTCTGCTAGGGGTGGATTTGGGGGTGATCCCACATCGATTGGAGGAAGGAAAGAGTGCCAACAAGGACGCTGGGCCTCGAAGGGAGGTGGATTGTGATGTCCCACATTGGTTGGGGAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTCTCCTAGTAGACGCGTTTTAAAACCTTCAAGGGAAGCCCGAAAGGGAAAGTCCAAAGAGGACAATATCTGCTAGTGGTGGGCCTGGGTCCTTACATTAAGGATGCAAAGTCTACAAGTACGTTGCTTAAAAAAAAAACCAAATTATCGTTTATTAAATAGGTTGGAATTAAATTTAGGGTCGTGTTTGGTAGGTTTAGACGTATTCATGGAAATGATATGTTTTTTTATTCAACTAATCCGATAAGTGATTCTACTGTTGGAGCCGAGAAATGCAAATACATGCAATTATGCTTCGAAAGAGAGTTGTTTCTATACTAGGCCAAGTCATTCGACTCGAGACTAAGGTCTCTCAATACAACGTCGCATCTCATCTTGGTTCTCAATTAATATGGGCACATGTCTTGAAGTCATCCTAAGTCATAAGGTGTCGTCGGCCATTGCAACTCACTCTGTCATGTCATCGAGAATGGGCCCACGTGTCGTTCGTAATACCGAGATATCCCGCACATCCCTTCATCCAGGTTCGATTGAGGTATTGGCCGTTCTATGTTAATGTCATGTCATTTATGGACTATGTATCGGATAGTGGGTGCATAATCTAACCTCTGATACATGGGTTGTGGAGTAATACTGATACACTTGTGATGTTCAGTAATGTATTTTAAAAACCCATTTCAAAAGAAGTCGTCCGAGACACTCGCCTCGTAACGCTTGCACTCACTGTGACATACGTATGTGCCACATGGTAGTTGTCTTAGGTCACAGGGTCGAGGGGTGGTGGAGAGTTGACACCATGGCTCCCCTAAGGTACATTTTGAAGTATTTTCAATCTTCCTCGGGTAGACGTCATTTTGGCGAACAGTCATATAGTGTTATGGAGCGTCCGTTCGGTGTCTGATTGACACGAAACTTGGCGAGAATTCATATTTCATATGGTAGGACTTGACTCACAGAACCACATGCACAAATTTCCTTCGGAATCTCAAATTTTGAGGTTAAGGCTTGGGGCCTTATCTAATCCTTCAACAAGCCTATCTTTGACACTCATGTCTGCTCGTGGCCCTTGTTTTGTTTATGCCTTGTCTTCTTTTGTTTTGGAAGGTCAAAAGTTTCATTTTGAGGCTATATAAAACCATGTATATTATCTTTGTAAAAGAGACGGGAAAATGTAGTATAAGGAGTATTTGTGCTTTCCTTTGGCCAATGACTAAGTTTCTCTGCAATTCTGTGTAGCTTAAGTTACATGTAGAATAATTCAAGATTGACATGATCAATCTTACTTATGGAGTAATTCAAATCTCAAACAAGTGTTCTTGCCTTCAGATATTCGATTAACAAGGTAATCACGAATCTTACTTCCCTTGTTGTGATTACTTATCATTCGGTATTAGGGCTTTCCCTTGGGTTGATTCCTTCTCAACTTGTCTAGACCCTCGCGTGGTCGGATGGGTACCACTCGATGGTCGTCGCATTACTTGTCCCTACTTGATGGTCACAACTTACTCTCTTCGTAGTATGGTTGGGACACCATGCATTCCCCTTAAATGATCAACCCTAGCCTTGACCTCTTGATGAGCTCGACCCTAGTTTTGACCTTGACTCCTTCTTGAGGTCGAGAAAGGTGTTTCGGGCTTTGGCTAAATTCCCTTCTTCTTCTCTTTGCTCTAAGACTCGGGCCTTCCATGTTTTAGCGAGTTTGTTCTACACTCGATTTTTTTTTTTTTTTTTGGTGTGAGCTTGGTTTTATCTTTCCTTCTATTTTGAGTTTACCCTTTTGATCCCGAATTACCTAAAACAAGTATTTTATTAAAAAAAAAGTCACAAACTCGAAATAATTTTGTACCGAGAACTCCATCCTCACAAGTTTTTCATAAGAAACATCTTGATCCCCACATCATTAAATGATAAATTTTGTATATCATGGGGACGAGAATGGAAATTCATCCCCATATCCACTCCACCTCGTCCACATCTCTATCTATTACAGTGAAAATTGAAATTTAGAATTTTAAGTCATTGCCTCTTCTGATTTATTCCATTTTAGTATCTAAAGTTTGAAATTATATACGTTGTTCCTTAAGTTTAAGAATCATATATTTTAATTCAACAACACGTGCGAGTGACCGTTCGAACCTTGTTTTTTTATGCAAGAGGCTCTTCACTTGACCAAGAATTCTCGAATCATCGGTACAGGTTTTCCCACTTTTCCAACTCTGTTGGCTAGAATTACTTCTATCTCCTTAGTGTCTTTCTGTTTCAGATCGATCCTAGATTTGGCAATGACATTTGGATGATTGTCGTTCTCTTTATGTTACTCCCATGGATTTTGAGGTGAATATATATATATATAAATAAATAAATAAATAAATAAATAAATAAATAAAAAGAAAAAGAATATATATAAAAATAAAGAAAAAGAGAAAAAGGAAATGCGAAAGAAAGGAAAAAAAAGAAAAAAGAAAATAAAAAATAATTGGAGAATTATAATAAAGAAAGGAGCTGAAAATGGTATAACTGTTGAAAGAAGCGGTCCGAAGGTGAGGGTAAAGGTGTATACGACGCGCAAGGAAGCGCGTGAGAGACACTCGCTCGGGTCATCCACCCACTTTGTTCTTACAGATTCACTTCTCTTTGCACTTCCACCACTGAAAAAGAAAAAGGCTAAAATGTTAGCAGGAATCTGTTGAACGTGGCGGAACCAAAGCGAGAGTTATTACCAAATCCTTTAATCGCGAGAGTCTTCTAATCTTCGTCGTTCGTTTTTCCTCTCCAATAATCGTCAGCAACAATGGAGGGATGGATGTTTTGGTTGGTTTCGTTACTCTTTTCTCTCTCTTTTTAGTTTTTTTGTGTGGAGAGGAGAATACAACGCCCTTTTCTCTCTTCCTCTCTCTCTCTCTCTCTAAAAAACCCACCTACAGAAAATCCTCGATCAATCCCATATACTCAATTTTTCGTTTCATTCCTCTGTTTTTCCCCTGATTTTGTTTTTTCTTTGGTGTTTGAGAAGGAAATTCGATTGTGGGTTTTTGATTTGATCGGAATTGGTGCTTTGGAAGTGGTGGATTGTGGTGGAAATGGGGATTTGGTTGGTGGGTTTCGATGA

mRNA sequence

ATGGATGATGTTCAGGCTAGCAAACGCCATATTGTCCCACTAGTACTTTATGATAGGGTGGATTTGGGGGTGATCCCACATCGATTGGAGGAAGGAAAGAGTGCCAACAAGGACGCTGGGCCTCGAAGGGAGGGAAGCCCGAAAGGGAAAGTCCAAAGAGGACAATATCTGCTAGTGGTGGGCCTGGGTCCTTACATTAAGGATGCAAAGTCTACAATCATCCTAAGTCATAAGGTGTCGTCGGCCATTGCAACTCACTCTGTCATGTCATCGAGAATGGGCCCACGTGTCGTTCGTAATACCGAGATATCCCGCACATCCCTTCATCCAGGTTCGATTGAGGAATCTGTTGAACGTGGCGGAACCAAAGCGAGAGTTATTACCAAATCCTTTAATCGCGAGAGTCTTCTAATCTTCGTCGTTCGTTTTTCCTCTCCAATAATCGTCAGCAACAATGGAGGGATGGATGTTTTGAAGGAAATTCGATTGTGGGTTTTTGATTTGATCGGAATTGGTGCTTTGGAAGTGGTGGATTGTGGTGGAAATGGGGATTTGGTTGGTGGGTTTCGATGA

Coding sequence (CDS)

ATGGATGATGTTCAGGCTAGCAAACGCCATATTGTCCCACTAGTACTTTATGATAGGGTGGATTTGGGGGTGATCCCACATCGATTGGAGGAAGGAAAGAGTGCCAACAAGGACGCTGGGCCTCGAAGGGAGGGAAGCCCGAAAGGGAAAGTCCAAAGAGGACAATATCTGCTAGTGGTGGGCCTGGGTCCTTACATTAAGGATGCAAAGTCTACAATCATCCTAAGTCATAAGGTGTCGTCGGCCATTGCAACTCACTCTGTCATGTCATCGAGAATGGGCCCACGTGTCGTTCGTAATACCGAGATATCCCGCACATCCCTTCATCCAGGTTCGATTGAGGAATCTGTTGAACGTGGCGGAACCAAAGCGAGAGTTATTACCAAATCCTTTAATCGCGAGAGTCTTCTAATCTTCGTCGTTCGTTTTTCCTCTCCAATAATCGTCAGCAACAATGGAGGGATGGATGTTTTGAAGGAAATTCGATTGTGGGTTTTTGATTTGATCGGAATTGGTGCTTTGGAAGTGGTGGATTGTGGTGGAAATGGGGATTTGGTTGGTGGGTTTCGATGA

Protein sequence

MDDVQASKRHIVPLVLYDRVDLGVIPHRLEEGKSANKDAGPRREGSPKGKVQRGQYLLVVGLGPYIKDAKSTIILSHKVSSAIATHSVMSSRMGPRVVRNTEISRTSLHPGSIEESVERGGTKARVITKSFNRESLLIFVVRFSSPIIVSNNGGMDVLKEIRLWVFDLIGIGALEVVDCGGNGDLVGGFR

Homology

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BLAST of Carg22731 vs. NCBI nr
Match: KAG7022202.1 (hypothetical protein SDJN02_15932, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 372.1 bits (954), Expect = 2.9e-99
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MDDVQASKRHIVPLVLYDRVDLGVIPHRLEEGKSANKDAGPRREGSPKGKVQRGQYLLVV 60
           MDDVQASKRHIVPLVLYDRVDLGVIPHRLEEGKSANKDAGPRREGSPKGKVQRGQYLLVV
Sbjct: 1   MDDVQASKRHIVPLVLYDRVDLGVIPHRLEEGKSANKDAGPRREGSPKGKVQRGQYLLVV 60

Query: 61  GLGPYIKDAKSTIILSHKVSSAIATHSVMSSRMGPRVVRNTEISRTSLHPGSIEESVERG 120
           GLGPYIKDAKSTIILSHKVSSAIATHSVMSSRMGPRVVRNTEISRTSLHPGSIEESVERG
Sbjct: 61  GLGPYIKDAKSTIILSHKVSSAIATHSVMSSRMGPRVVRNTEISRTSLHPGSIEESVERG 120

Query: 121 GTKARVITKSFNRESLLIFVVRFSSPIIVSNNGGMDVLKEIRLWVFDLIGIGALEVVDCG 180
           GTKARVITKSFNRESLLIFVVRFSSPIIVSNNGGMDVLKEIRLWVFDLIGIGALEVVDCG
Sbjct: 121 GTKARVITKSFNRESLLIFVVRFSSPIIVSNNGGMDVLKEIRLWVFDLIGIGALEVVDCG 180

Query: 181 GNGDLVGGFR 191
           GNGDLVGGFR
Sbjct: 181 GNGDLVGGFR 190

The following BLAST results are available for this feature:

BLAST of Carg22731 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022202.1	2.9e-99	100.00	hypothetical protein SDJN02_15932, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg22731 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg22731 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg22731 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22731-RA	Carg22731-RA	mRNA