Carg22723 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22723
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Basic leucine zipper/W2 domain protein
Location	Carg_Chr11: 5008496 .. 5008708 (-)
RNA-Seq Expression	Carg22723
Synteny	Carg22723

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGAGAGAAGAGCCCTGGTCTTAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGTTACGAGCGTAGCTCGGATGAGAATGAGGGATATGGAGAGTATCATCAAGTCCGATCAACAACAACAATCGATGCACCAGCAGCGACAAACGTCTTCCACCGATTCGTTTTTCGTTGGCGAAGGTGACACATCTGAGGATTAG

mRNA sequence

ATGGCGAGAGAGAAGAGCCCTGGTCTTAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGTTACGAGCGTAGCTCGGATGAGAATGAGGGATATGGAGAGTATCATCAAGTCCGATCAACAACAACAATCGATGCACCAGCAGCGACAAACGTCTTCCACCGATTCGTTTTTCGTTGGCGAAGGTGACACATCTGAGGATTAG

Coding sequence (CDS)

ATGGCGAGAGAGAAGAGCCCTGGTCTTAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGTTACGAGCGTAGCTCGGATGAGAATGAGGGATATGGAGAGTATCATCAAGTCCGATCAACAACAACAATCGATGCACCAGCAGCGACAAACGTCTTCCACCGATTCGTTTTTCGTTGGCGAAGGTGACACATCTGAGGATTAG

Protein sequence

MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSFFVGEGDTSED

Homology

[Close]

BLAST of Carg22723 vs. NCBI nr
Match: KAG7022194.1 (hypothetical protein SDJN02_15924, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.4 bits (337), Expect = 3.7e-28
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60
          MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF
Sbjct: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60

Query: 61 FVGEGDTSED 71
          FVGEGDTSED
Sbjct: 61 FVGEGDTSED 70

[Close]

BLAST of Carg22723 vs. NCBI nr
Match: XP_022933307.1 (uncharacterized protein LOC111440489 [Cucurbita moschata])

HSP 1 Score: 131.0 bits (328), Expect = 4.1e-27
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60
          MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF
Sbjct: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60

Query: 61 FVGEGDTSED 71
          FVGEG+TSE+
Sbjct: 61 FVGEGETSEN 70

[Close]

BLAST of Carg22723 vs. NCBI nr
Match: KAG6588274.1 (hypothetical protein SDJN03_16839, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.2 bits (308), Expect = 8.6e-25
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60
          MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF
Sbjct: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60

Query: 61 FVGE 65
          FVGE
Sbjct: 61 FVGE 64

[Close]

BLAST of Carg22723 vs. NCBI nr
Match: XP_022987500.1 (uncharacterized protein LOC111485045 [Cucurbita maxima] >KAG7023767.1 hypothetical protein SDJN02_14793, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.1 bits (240), Expect = 6.6e-17
Identity = 53/69 (76.81%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60
          MAR+KSPG+KILWVWTLGTAAILVTSVAR RMRDME++I SDQQ    HQ  QTSSTDSF
Sbjct: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMINSDQQPSLHHQ--QTSSTDSF 60

Query: 61 FVGEGDTSE 70
           V EGD S+
Sbjct: 61 SVDEGDVSQ 67

[Close]

BLAST of Carg22723 vs. NCBI nr
Match: XP_023516467.1 (uncharacterized protein LOC111780326 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.1 bits (240), Expect = 6.6e-17
Identity = 53/69 (76.81%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60
          MAR+KSPG+KILWVWTLGTAAILVTSVAR RMRDME++I SDQQ    HQ  QTSSTDSF
Sbjct: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMINSDQQPSLHHQ--QTSSTDSF 60

Query: 61 FVGEGDTSE 70
           V EGD S+
Sbjct: 61 SVDEGDASQ 67

[Close]

BLAST of Carg22723 vs. ExPASy TrEMBL
Match: A0A6J1EZE2 (uncharacterized protein LOC111440489 OS=Cucurbita moschata OX=3662 GN=LOC111440489 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.0e-27
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60
          MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF
Sbjct: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60

Query: 61 FVGEGDTSED 71
          FVGEG+TSE+
Sbjct: 61 FVGEGETSEN 70

[Close]

BLAST of Carg22723 vs. ExPASy TrEMBL
Match: A0A6J1JH17 (uncharacterized protein LOC111485045 OS=Cucurbita maxima OX=3661 GN=LOC111485045 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.2e-17
Identity = 53/69 (76.81%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60
          MAR+KSPG+KILWVWTLGTAAILVTSVAR RMRDME++I SDQQ    HQ  QTSSTDSF
Sbjct: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMINSDQQPSLHHQ--QTSSTDSF 60

Query: 61 FVGEGDTSE 70
           V EGD S+
Sbjct: 61 SVDEGDVSQ 67

[Close]

BLAST of Carg22723 vs. ExPASy TrEMBL
Match: A0A6J1D892 (uncharacterized protein LOC111018274 OS=Momordica charantia OX=3673 GN=LOC111018274 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.0e-15
Identity = 52/70 (74.29%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60
          MAREK+PGLKILWVWTLGTAAILVTSVARMRMRDME+II SDQQQ    Q +QT  TDS 
Sbjct: 19 MAREKNPGLKILWVWTLGTAAILVTSVARMRMRDMETIINSDQQQS---QPQQTFPTDSL 78

Query: 61 FVGEGDTSED 71
            GEG   +D
Sbjct: 79 PNGEGVIRDD 85

[Close]

BLAST of Carg22723 vs. ExPASy TrEMBL
Match: A0A0A0LY21 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G656450 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-14
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIK-SDQQQQSMHQQRQTSSTDS 60
          M REKSPGLKILWVWTLGTAAIL TSV RMR+RDME+ +  +  QQQS+H Q QTSSTDS
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTVNFNSDQQQSLHHQ-QTSSTDS 60

Query: 61 FFVGEGDTSE 70
          F + + D S+
Sbjct: 61 FSLDDADKSQ 69

[Close]

BLAST of Carg22723 vs. ExPASy TrEMBL
Match: A0A5D3E426 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00800 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 8.2e-13
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60
          M REKSPGLKILWVWTLGTAAIL TSV RMR+RDME+ I  +  QQ     +QTSSTDSF
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTINFNSDQQPSLHHQQTSSTDSF 60

Query: 61 FVGEGDTSED 71
           + +  + +D
Sbjct: 61 PIPDSFSVDD 70

[Close]

BLAST of Carg22723 vs. TAIR 10
Match: AT1G06010.1 (unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.5 bits (171), Expect = 6.2e-13
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60
          M REKSPGLKILWVWT+GTAAILVTSV R RM+DM++++  +Q+Q     Q  ++   S 
Sbjct: 1  MGREKSPGLKILWVWTIGTAAILVTSVVRTRMQDMQTMMNQNQEQAPKENQNGSAGDSSV 60

Query: 61 FVGE 65
           + E
Sbjct: 61 LMDE 64

The following BLAST results are available for this feature:

BLAST of Carg22723 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022194.1	3.7e-28	100.00	hypothetical protein SDJN02_15924, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022933307.1	4.1e-27	97.14	uncharacterized protein LOC111440489 [Cucurbita moschata]	[more]
KAG6588274.1	8.6e-25	100.00	hypothetical protein SDJN03_16839, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022987500.1	6.6e-17	76.81	uncharacterized protein LOC111485045 [Cucurbita maxima] >KAG7023767.1 hypothetic...	[more]
XP_023516467.1	6.6e-17	76.81	uncharacterized protein LOC111780326 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg22723 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg22723 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EZE2	2.0e-27	97.14	uncharacterized protein LOC111440489 OS=Cucurbita moschata OX=3662 GN=LOC1114404...	[more]
A0A6J1JH17	3.2e-17	76.81	uncharacterized protein LOC111485045 OS=Cucurbita maxima OX=3661 GN=LOC111485045...	[more]
A0A6J1D892	3.0e-15	74.29	uncharacterized protein LOC111018274 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A0A0LY21	1.9e-14	68.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G656450 PE=4 SV=1	[more]
A0A5D3E426	8.2e-13	62.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Carg22723 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06010.1	6.2e-13	54.69	unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22723-RA	Carg22723-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane