Carg22719 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22719
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Protein TIC 20
Location	Carg_Chr11: 4975401 .. 4975877 (+)
RNA-Seq Expression	Carg22719
Synteny	Carg22719

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTACAACCCTACTCCGGCCACCGACCGCCTCATCTCCGCCGTCGCCTACAGTCTCCCCTTCTTCAACTCCCTCCAGTACGGCCGCTTCCTCTTCACCCAGTACCCGGTCCTCGGCCTCGCCTTCGAACCGATTCTCCCTATTCTAGGGCTTTATCGCTCGATCCCACACTCTAGCTTCATCGCCTTCTTTGCGCTCTACTTGGGCGTTGTCCGGAACCCTAACTTCAACCGCTACGTGAGGTTCAATTCAATGCAGGCGGTGACCCTGGACGTGCTGCTGGCGGTGCCGTTGTTGATACAGAGGATTCTGAGTCCCGGTCCGGGCGGATTAGGGTTCCAGATTATGGTTTGGGGCCATAATGGATTGTTTCTTTTCAGTGTTTTGTGTTTTGTTCACAGTCTCGCTTCTTGCCTTCTGGGTCGGACCCCTCACTTGCCGCTTGTTGCTGATGCTGCTGGCAGGCAGATTTAG

mRNA sequence

ATGTCCTACAACCCTACTCCGGCCACCGACCGCCTCATCTCCGCCGTCGCCTACAGTCTCCCCTTCTTCAACTCCCTCCAGTACGGCCGCTTCCTCTTCACCCAGTACCCGGTCCTCGGCCTCGCCTTCGAACCGATTCTCCCTATTCTAGGGCTTTATCGCTCGATCCCACACTCTAGCTTCATCGCCTTCTTTGCGCTCTACTTGGGCGTTGTCCGGAACCCTAACTTCAACCGCTACGTGAGGTTCAATTCAATGCAGGCGGTGACCCTGGACGTGCTGCTGGCGGTGCCGTTGTTGATACAGAGGATTCTGAGTCCCGGTCCGGGCGGATTAGGGTTCCAGATTATGGTTTGGGGCCATAATGGATTGTTTCTTTTCAGTGTTTTGTGTTTTGTTCACAGTCTCGCTTCTTGCCTTCTGGGTCGGACCCCTCACTTGCCGCTTGTTGCTGATGCTGCTGGCAGGCAGATTTAG

Coding sequence (CDS)

ATGTCCTACAACCCTACTCCGGCCACCGACCGCCTCATCTCCGCCGTCGCCTACAGTCTCCCCTTCTTCAACTCCCTCCAGTACGGCCGCTTCCTCTTCACCCAGTACCCGGTCCTCGGCCTCGCCTTCGAACCGATTCTCCCTATTCTAGGGCTTTATCGCTCGATCCCACACTCTAGCTTCATCGCCTTCTTTGCGCTCTACTTGGGCGTTGTCCGGAACCCTAACTTCAACCGCTACGTGAGGTTCAATTCAATGCAGGCGGTGACCCTGGACGTGCTGCTGGCGGTGCCGTTGTTGATACAGAGGATTCTGAGTCCCGGTCCGGGCGGATTAGGGTTCCAGATTATGGTTTGGGGCCATAATGGATTGTTTCTTTTCAGTGTTTTGTGTTTTGTTCACAGTCTCGCTTCTTGCCTTCTGGGTCGGACCCCTCACTTGCCGCTTGTTGCTGATGCTGCTGGCAGGCAGATTTAG

Protein sequence

MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI

Homology

[Close]

BLAST of Carg22719 vs. NCBI nr
Match: KAG7022190.1 (Protein TIC 20-II, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 319.3 bits (817), Expect = 1.8e-83
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS 60
           MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS
Sbjct: 1   MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS 60

Query: 61  FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWG 120
           FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWG
Sbjct: 61  FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWG 120

Query: 121 HNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
           HNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI
Sbjct: 121 HNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI 158

[Close]

BLAST of Carg22719 vs. NCBI nr
Match: XP_023005745.1 (protein TIC 20-II, chloroplastic-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 312.8 bits (800), Expect = 1.7e-81
Identity = 155/158 (98.10%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS 60
           MSYNPTPATDRLISAVAY+LPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS
Sbjct: 51  MSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS 110

Query: 61  FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWG 120
           FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPG GGLGFQIMVWG
Sbjct: 111 FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGSGGLGFQIMVWG 170

Query: 121 HNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
           HNGLFLFSVLCFV+SLASCLLGRTPHLPLVADAAGRQI
Sbjct: 171 HNGLFLFSVLCFVYSLASCLLGRTPHLPLVADAAGRQI 208

[Close]

BLAST of Carg22719 vs. NCBI nr
Match: XP_023005732.1 (protein TIC 20-II, chloroplastic-like isoform X1 [Cucurbita maxima] >XP_023005740.1 protein TIC 20-II, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 312.8 bits (800), Expect = 1.7e-81
Identity = 155/158 (98.10%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS 60
           MSYNPTPATDRLISAVAY+LPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS
Sbjct: 58  MSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS 117

Query: 61  FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWG 120
           FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPG GGLGFQIMVWG
Sbjct: 118 FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGSGGLGFQIMVWG 177

Query: 121 HNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
           HNGLFLFSVLCFV+SLASCLLGRTPHLPLVADAAGRQI
Sbjct: 178 HNGLFLFSVLCFVYSLASCLLGRTPHLPLVADAAGRQI 215

[Close]

BLAST of Carg22719 vs. NCBI nr
Match: XP_023520670.1 (protein TIC 20-II, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023520671.1 protein TIC 20-II, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 308.1 bits (788), Expect = 4.3e-80
Identity = 153/158 (96.84%), Postives = 155/158 (98.10%), Query Frame = 0


Query: 1   MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS 60
           MSYNPTPATDRLISAVAY+LPFFNSLQYGR LFTQYPVLGLAFEPILPILGLYRSIPHSS
Sbjct: 51  MSYNPTPATDRLISAVAYTLPFFNSLQYGRLLFTQYPVLGLAFEPILPILGLYRSIPHSS 110

Query: 61  FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWG 120
           FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWG
Sbjct: 111 FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWG 170

Query: 121 HNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
           HNGLFLFSVLCFV+ LASCLLGRTPHL LVADAAGRQI
Sbjct: 171 HNGLFLFSVLCFVYRLASCLLGRTPHLRLVADAAGRQI 208

[Close]

BLAST of Carg22719 vs. NCBI nr
Match: XP_038879337.1 (protein TIC 20-II, chloroplastic [Benincasa hispida])

HSP 1 Score: 292.0 bits (746), Expect = 3.2e-75
Identity = 140/158 (88.61%), Postives = 151/158 (95.57%), Query Frame = 0


Query: 1   MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS 60
           MSYNPTPATDR+ISAVAY+LPFFNSLQYGRFLF QYP LG AFEP+LPILGLYRSIPH+S
Sbjct: 51  MSYNPTPATDRVISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHAS 110

Query: 61  FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWG 120
           F+AFFALYLG+VRNP+F+ YVRFNSMQAVTLDVLL VPLLIQRILSPG GGLGFQIMVWG
Sbjct: 111 FVAFFALYLGLVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGLGFQIMVWG 170

Query: 121 HNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
           HNGLF+FSVLCFV+SL SCLLGRTPHLP+VADAAGRQI
Sbjct: 171 HNGLFVFSVLCFVYSLVSCLLGRTPHLPIVADAAGRQI 208

[Close]

BLAST of Carg22719 vs. ExPASy Swiss-Prot
Match: O82251 (Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-II PE=2 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.7e-61
Identity = 111/158 (70.25%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 2   SYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSF 61
           SY PTPAT+R+IS  +Y+LPFFNSLQYGRFLF QYP LGL FEPI PIL LYRS+P++SF
Sbjct: 51  SYTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRSVPYASF 110

Query: 62  IAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGP-GGLGFQIMVWG 121
           +AFF LYLGVVRN +F+RYVRFN+MQAVTLDVLLAVP+L+ RIL PG  GG G + M+WG
Sbjct: 111 VAFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQGGGFGMKAMMWG 170

Query: 122 HNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
           H G+F+FS +CFV+ + S LLG+TP++P VADAAGRQ+
Sbjct: 171 HTGVFVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208

[Close]

BLAST of Carg22719 vs. ExPASy Swiss-Prot
Match: Q9FM67 (Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-V PE=2 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.7e-35
Identity = 70/151 (46.36%), Postives = 103/151 (68.21%), Query Frame = 0


Query: 8   ATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFAL 67
           A+DR+ISAV Y  PFF+ +QYG+F+ TQY    +  +P+ P +  ++S P + F+ F  L
Sbjct: 59  ASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITL 118

Query: 68  YLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWGHNGLFLF 127
           Y  VVRNPNF+RYVRFN+MQA+ LDVLL  P L++R  +P   G G  +++   + +FLF
Sbjct: 119 YFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNP-RDGFGLDVVMSLDSTVFLF 178

Query: 128 SVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
            ++  ++  ++CL G TP LPLVA+AA RQ+
Sbjct: 179 LLVSLIYGFSACLFGLTPRLPLVAEAADRQV 208

[Close]

BLAST of Carg22719 vs. ExPASy Swiss-Prot
Match: P73387 (Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1737 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.1e-21
Identity = 54/151 (35.76%), Postives = 91/151 (60.26%), Query Frame = 0


Query: 10  DRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYL 69
           DR  SA+ Y +P  ++  +G FL  Q+PVL + + PI+P+L  Y   P +SFI F  L++
Sbjct: 11  DRFFSALIYVIPLIDAFMFGGFLLQQFPVLQIIYLPIMPLLQFYYQFPFASFIIFIVLFM 70

Query: 70  GVVRNPNFNRYVRFNSMQAVTLDVLLAV-PLLIQRILSPGPG-GLGFQIMVWGHNGLFLF 129
            VVRN N + ++RFN+MQA+ + +LL++  L++  ++ P  G GL  + +   +N  FL 
Sbjct: 71  AVVRNNNISHFIRFNAMQAILIGILLSLFGLIVAYVIQPVFGQGLVTETL---YNFAFLG 130

Query: 130 SVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
           ++ C    +   +LGR   +P ++DAA  Q+
Sbjct: 131 ALACGFFGIVQSVLGRYAEIPTISDAAYSQV 158

[Close]

BLAST of Carg22719 vs. ExPASy TrEMBL
Match: A0A6J1KY86 (Protein TIC 20 OS=Cucurbita maxima OX=3661 GN=LOC111498634 PE=3 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 8.4e-82
Identity = 155/158 (98.10%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS 60
           MSYNPTPATDRLISAVAY+LPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS
Sbjct: 58  MSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS 117

Query: 61  FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWG 120
           FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPG GGLGFQIMVWG
Sbjct: 118 FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGSGGLGFQIMVWG 177

Query: 121 HNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
           HNGLFLFSVLCFV+SLASCLLGRTPHLPLVADAAGRQI
Sbjct: 178 HNGLFLFSVLCFVYSLASCLLGRTPHLPLVADAAGRQI 215

[Close]

BLAST of Carg22719 vs. ExPASy TrEMBL
Match: A0A6J1KY91 (Protein TIC 20 OS=Cucurbita maxima OX=3661 GN=LOC111498634 PE=3 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 8.4e-82
Identity = 155/158 (98.10%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS 60
           MSYNPTPATDRLISAVAY+LPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS
Sbjct: 51  MSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS 110

Query: 61  FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWG 120
           FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPG GGLGFQIMVWG
Sbjct: 111 FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGSGGLGFQIMVWG 170

Query: 121 HNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
           HNGLFLFSVLCFV+SLASCLLGRTPHLPLVADAAGRQI
Sbjct: 171 HNGLFLFSVLCFVYSLASCLLGRTPHLPLVADAAGRQI 208

[Close]

BLAST of Carg22719 vs. ExPASy TrEMBL
Match: A0A0A0LXS7 (Protein TIC 20 OS=Cucumis sativus OX=3659 GN=Csa_1G654890 PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.2e-74
Identity = 138/158 (87.34%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 1   MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS 60
           MSYNPTPATDRLISAVAY+LPFFNSLQYGRFLF QYP LG AFEP+LPILGLYRSIPHSS
Sbjct: 51  MSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSS 110

Query: 61  FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWG 120
           F+AFFALYLGVVRNP+FN YVRFNSMQAVTLDVLL VPLLIQRILSPG  G+GF+IMVW 
Sbjct: 111 FVAFFALYLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWS 170

Query: 121 HNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
           HNGLF+FSVLCF++S+ SCLLGRTPHLP+VADAAGRQI
Sbjct: 171 HNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 208

[Close]

BLAST of Carg22719 vs. ExPASy TrEMBL
Match: A0A1S3B9C6 (Protein TIC 20 OS=Cucumis melo OX=3656 GN=LOC103487217 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.9e-74
Identity = 137/158 (86.71%), Postives = 150/158 (94.94%), Query Frame = 0


Query: 1   MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS 60
           MSYNPTPATDRLISAV+Y+LPFFNSLQYGRFLF QYP LG AFEP+LPILGLYRSIPHSS
Sbjct: 54  MSYNPTPATDRLISAVSYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSS 113

Query: 61  FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWG 120
           F+AFFALYLGVVRNP+F+ YVRFNSMQAVTLDVLL VPLLIQRILSPG GG+GF+IMVW 
Sbjct: 114 FVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGIGFKIMVWS 173

Query: 121 HNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
           HNGLF+FSVLCF++S+ SCLLGRTPHLP+VADAAGRQI
Sbjct: 174 HNGLFVFSVLCFLYSMVSCLLGRTPHLPIVADAAGRQI 211

[Close]

BLAST of Carg22719 vs. ExPASy TrEMBL
Match: A0A5D3E499 (Protein TIC 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00600 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.9e-74
Identity = 137/158 (86.71%), Postives = 150/158 (94.94%), Query Frame = 0


Query: 1   MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS 60
           MSYNPTPATDRLISAV+Y+LPFFNSLQYGRFLF QYP LG AFEP+LPILGLYRSIPHSS
Sbjct: 54  MSYNPTPATDRLISAVSYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSS 113

Query: 61  FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWG 120
           F+AFFALYLGVVRNP+F+ YVRFNSMQAVTLDVLL VPLLIQRILSPG GG+GF+IMVW 
Sbjct: 114 FVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGIGFKIMVWS 173

Query: 121 HNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
           HNGLF+FSVLCF++S+ SCLLGRTPHLP+VADAAGRQI
Sbjct: 174 HNGLFVFSVLCFLYSMVSCLLGRTPHLPIVADAAGRQI 211

[Close]

BLAST of Carg22719 vs. TAIR 10
Match: AT2G47840.1 (Uncharacterised conserved protein ycf60 )

HSP 1 Score: 236.1 bits (601), Expect = 1.9e-62
Identity = 111/158 (70.25%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 2   SYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSF 61
           SY PTPAT+R+IS  +Y+LPFFNSLQYGRFLF QYP LGL FEPI PIL LYRS+P++SF
Sbjct: 51  SYTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRSVPYASF 110

Query: 62  IAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGP-GGLGFQIMVWG 121
           +AFF LYLGVVRN +F+RYVRFN+MQAVTLDVLLAVP+L+ RIL PG  GG G + M+WG
Sbjct: 111 VAFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQGGGFGMKAMMWG 170

Query: 122 HNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
           H G+F+FS +CFV+ + S LLG+TP++P VADAAGRQ+
Sbjct: 171 HTGVFVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208

[Close]

BLAST of Carg22719 vs. TAIR 10
Match: AT5G55710.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein ycf60 (TAIR:AT2G47840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 147.9 bits (372), Expect = 6.9e-36
Identity = 70/151 (46.36%), Postives = 103/151 (68.21%), Query Frame = 0


Query: 8   ATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFAL 67
           A+DR+ISAV Y  PFF+ +QYG+F+ TQY    +  +P+ P +  ++S P + F+ F  L
Sbjct: 59  ASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITL 118

Query: 68  YLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWGHNGLFLF 127
           Y  VVRNPNF+RYVRFN+MQA+ LDVLL  P L++R  +P   G G  +++   + +FLF
Sbjct: 119 YFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNP-RDGFGLDVVMSLDSTVFLF 178

Query: 128 SVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
            ++  ++  ++CL G TP LPLVA+AA RQ+
Sbjct: 179 LLVSLIYGFSACLFGLTPRLPLVAEAADRQV 208

The following BLAST results are available for this feature:

BLAST of Carg22719 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022190.1	1.8e-83	100.00	Protein TIC 20-II, chloroplastic, partial [Cucurbita argyrosperma subsp. argyros...	[more]
XP_023005745.1	1.7e-81	98.10	protein TIC 20-II, chloroplastic-like isoform X2 [Cucurbita maxima]	[more]
XP_023005732.1	1.7e-81	98.10	protein TIC 20-II, chloroplastic-like isoform X1 [Cucurbita maxima] >XP_02300574...	[more]
XP_023520670.1	4.3e-80	96.84	protein TIC 20-II, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023520671...	[more]
XP_038879337.1	3.2e-75	88.61	protein TIC 20-II, chloroplastic [Benincasa hispida]	[more]

BLAST of Carg22719 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82251	2.7e-61	70.25	Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-II PE=...	[more]
Q9FM67	9.7e-35	46.36	Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-V PE=2 ...	[more]
P73387	2.1e-21	35.76	Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 ...	[more]

BLAST of Carg22719 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KY86	8.4e-82	98.10	Protein TIC 20 OS=Cucurbita maxima OX=3661 GN=LOC111498634 PE=3 SV=1	[more]
A0A6J1KY91	8.4e-82	98.10	Protein TIC 20 OS=Cucurbita maxima OX=3661 GN=LOC111498634 PE=3 SV=1	[more]
A0A0A0LXS7	2.2e-74	87.34	Protein TIC 20 OS=Cucumis sativus OX=3659 GN=Csa_1G654890 PE=3 SV=1	[more]
A0A1S3B9C6	2.9e-74	86.71	Protein TIC 20 OS=Cucumis melo OX=3656 GN=LOC103487217 PE=3 SV=1	[more]
A0A5D3E499	2.9e-74	86.71	Protein TIC 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G006...	[more]

BLAST of Carg22719 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47840.1	1.9e-62	70.25	Uncharacterised conserved protein ycf60	[more]
AT5G55710.1	6.9e-36	46.36	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005691	Chloroplast protein import component Tic20	PFAM	PF16166	TIC20	coord: 11..154 e-value: 1.5E-44 score: 151.9
IPR005691	Chloroplast protein import component Tic20	PANTHER	PTHR33510	PROTEIN TIC 20-II, CHLOROPLASTIC	coord: 2..158
None	No IPR available	PANTHER	PTHR33510:SF5	PROTEIN TIC 20-II, CHLOROPLASTIC	coord: 2..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22719-RA	Carg22719-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane