Carg22716 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22716
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ycf20-like protein
Location	Carg_Chr11: 4939626 .. 4941437 (+)
RNA-Seq Expression	Carg22716
Synteny	Carg22716

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAGATTTTGTGAACAATTTCCTCCAATGGACAACGATTTTCGAGGATGAGGGTAACCACATCGCCCTTCGTTTGACGCATTTCGCCGCTAGGGTTTCGTCTCGGCGCTATCAATTCCAGCGGCATTTGAAGTTTCCGGCAAGAACTTTACTGGTAATTTTCTCGGTCTCGAAATTTCATTTGTATTTCTCTTGCCTGAATTTGTTGTGTGTTCTAATTCACTGCTGAAATACTTGCTTGAATGTTCCTCGAGCATCATAGGCCGACTAGACTGCAACTGTTTGATATTTCTCCTTTATCTCTTGCATTTCGGTTACACAAGTTTATACGAATGGGATGCACGATAGTGATCATATGTTGAATATCCTACGCATTGGTTTGAATTCTAAACATTGGATTTTAGATTTGTTGCAAAGTTGTAGATTGAACAATTTTGATTTGATTTTAATTTGTAGTACAGAGGCGGTCTCTTTTGATTCGAAGATTGTGTAATAAATGGCAATATCAGTATGCAGATAACCACCTGCTCGAATGGAAGCTATGATTATGCAGTCCAGATTATTGACAATAGCGAATTATATCTCCAAAGGATTATGTCTTACGTATATGCCTTGCCTAATCCATAACATGGGCTATGTGGCTATCCTTAATGGACACAATTCAACTCTTTGCTTGAAGTCTGCACCTTTTCCTCGCAAAAGGTAGATGTGGAATTTATAAACTTGTATCACGTGTTGTTAAGAGACCTATGCTATTCTTCTTGCATATATTTTCATTTTAGCTGGAGAACTATAGGTCCACAAGATCATGTCTTAATAGTATTGGATGAATGCTAATTTTGTTGAGCACAGAAGTTAAGCTGGAGAGGAATAGATTAGTAGCACGTCTAGAGAGGTTGAGAACTTTTGGGAGGGGATTTGGGGAGGTTGCTAGATTTAATGCATCTTGTGAGCGTCCATTCTTTTTTAATTACTAGTTTGGTCTCTTTCTTTTGGATTGAAGTCTCTTTCTGTAGTTAGTGTTAAGTCTCCTTTTGCGGGGTCGTTTGTTGTATGTCCTTGTACATTCTTTCATTTTTCTATATAAAAGTTTTTTTTTTTTTCTTATTTAAAAGAAGAAAAGTAAACTCCGTATCGTTGCTGTTATGAACATTTGGTTGTGATGTTACTTTTTACAGTTTCCGGACGAGTAGACATCTACAACAATTAGCCTTTGCATTAGACACAGGTGGGGTATCTAGTAACGGTGGGGGAGACAACCTTGATGATGGTAATGAGTCGAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGCGCAGGTGCCAGACAGTTGCTGGAAAAACTAAACTCAGCTAGAAAGAACTTTCCTACAAAGATATTTTTGCTTCTTTTGGGTTTCTATACAGCCAATGCTCTTGCTACAATTCTTGGGCAGACGGGTGACTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATTGAATGGATTGGTATACTCATGTACAAGAAGCCACCACCTCTATTAACTAGGAGGTTGAAATCATTAATAGTACTGATAAACTATTGGAAAGCCGGCGTATGCTTAGGCCTCTTCGTCGATGCGTTCAAATTGGGGAGTTGAAAGATGTTGCTTCCTGGTTTGAAATAAAACAAAAGGTAGTTCTTTTTATCTTAGAGGAAAGTTATTTTTGTACGAGGCACGAGTTCTTATTCCATCTTGTGTTACATTTGTAACTGTATAATCTTATAGATACCTATTATAGGATGTTTCTGTACTATGATCTTCTGCAATCTTCACATTTTTAGC

mRNA sequence

AACAGATTTTGTGAACAATTTCCTCCAATGGACAACGATTTTCGAGGATGAGGGTAACCACATCGCCCTTCGTTTGACGCATTTCGCCGCTAGGGTTTCGTCTCGGCGCTATCAATTCCAGCGGCATTTGAAGTTTCCGGCAAGAACTTTACTGTACAGAGGCGGTCTCTTTTGATTCGAAGATTGTGTAATAAATGGCAATATCAGTATGCAGATAACCACCTGCTCGAATGGAAGCTATGATTATGCAGTCCAGATTATTGACAATAGCGAATTATATCTCCAAAGGATTATGTCTTACGTATATGCCTTGCCTAATCCATAACATGGGCTATGTGGCTATCCTTAATGGACACAATTCAACTCTTTGCTTGAAGTCTGCACCTTTTCCTCGCAAAAGTTTCCGGACGAGTAGACATCTACAACAATTAGCCTTTGCATTAGACACAGGTGGGGTATCTAGTAACGGTGGGGGAGACAACCTTGATGATGGTAATGAGTCGAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGCGCAGGTGCCAGACAGTTGCTGGAAAAACTAAACTCAGCTAGAAAGAACTTTCCTACAAAGATATTTTTGCTTCTTTTGGGTTTCTATACAGCCAATGCTCTTGCTACAATTCTTGGGCAGACGGGTGACTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATTGAATGGATTGGTATACTCATGTACAAGAAGCCACCACCTCTATTAACTAGGAGGTTGAAATCATTAATAGTACTGATAAACTATTGGAAAGCCGGCGTATGCTTAGGCCTCTTCGTCGATGCGTTCAAATTGGGGAGTTGAAAGATGTTGCTTCCTGGTTTGAAATAAAACAAAAGGTAGTTCTTTTTATCTTAGAGGAAAGTTATTTTTGTACGAGGCACGAGTTCTTATTCCATCTTGTGTTACATTTGTAACTGTATAATCTTATAGATACCTATTATAGGATGTTTCTGTACTATGATCTTCTGCAATCTTCACATTTTTAGC

Coding sequence (CDS)

ATGGAAGCTATGATTATGCAGTCCAGATTATTGACAATAGCGAATTATATCTCCAAAGGATTATGTCTTACGTATATGCCTTGCCTAATCCATAACATGGGCTATGTGGCTATCCTTAATGGACACAATTCAACTCTTTGCTTGAAGTCTGCACCTTTTCCTCGCAAAAGTTTCCGGACGAGTAGACATCTACAACAATTAGCCTTTGCATTAGACACAGGTGGGGTATCTAGTAACGGTGGGGGAGACAACCTTGATGATGGTAATGAGTCGAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGCGCAGGTGCCAGACAGTTGCTGGAAAAACTAAACTCAGCTAGAAAGAACTTTCCTACAAAGATATTTTTGCTTCTTTTGGGTTTCTATACAGCCAATGCTCTTGCTACAATTCTTGGGCAGACGGGTGACTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATTGAATGGATTGGTATACTCATGTACAAGAAGCCACCACCTCTATTAACTAGGAGGTTGAAATCATTAATAGTACTGATAAACTATTGGAAAGCCGGCGTATGCTTAGGCCTCTTCGTCGATGCGTTCAAATTGGGGAGTTGA

Protein sequence

MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS

Homology

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BLAST of Carg22716 vs. NCBI nr
Match: XP_022924878.1 (ycf20-like protein [Cucurbita moschata] >XP_022924885.1 ycf20-like protein [Cucurbita moschata] >XP_022924895.1 ycf20-like protein [Cucurbita moschata] >XP_022924902.1 ycf20-like protein [Cucurbita moschata] >XP_022924910.1 ycf20-like protein [Cucurbita moschata] >XP_022924918.1 ycf20-like protein [Cucurbita moschata] >KAG7022187.1 Ycf20-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 404.1 bits (1037), Expect = 7.4e-109
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0


Query: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRT 60
           MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRT
Sbjct: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRT 60

Query: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120
           SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF
Sbjct: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120

Query: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180
           PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS
Sbjct: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180

Query: 181 LIVLINYWKAGVCLGLFVDAFKLGS 206
           LIVLINYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LIVLINYWKAGVCLGLFVDAFKLGS 205

[Close]

BLAST of Carg22716 vs. NCBI nr
Match: XP_023520636.1 (ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520637.1 ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520638.1 ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520639.1 ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520640.1 ycf20-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 402.5 bits (1033), Expect = 2.2e-108
Identity = 204/205 (99.51%), Postives = 204/205 (99.51%), Query Frame = 0


Query: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRT 60
           MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKS PFPRKSFRT
Sbjct: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSVPFPRKSFRT 60

Query: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120
           SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF
Sbjct: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120

Query: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180
           PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS
Sbjct: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180

Query: 181 LIVLINYWKAGVCLGLFVDAFKLGS 206
           LIVLINYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LIVLINYWKAGVCLGLFVDAFKLGS 205

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BLAST of Carg22716 vs. NCBI nr
Match: XP_022973215.1 (ycf20-like protein [Cucurbita maxima] >XP_022973224.1 ycf20-like protein [Cucurbita maxima] >XP_022973228.1 ycf20-like protein [Cucurbita maxima] >XP_022973233.1 ycf20-like protein [Cucurbita maxima] >XP_022973241.1 ycf20-like protein [Cucurbita maxima] >XP_022973250.1 ycf20-like protein [Cucurbita maxima])

HSP 1 Score: 401.4 bits (1030), Expect = 4.8e-108
Identity = 204/205 (99.51%), Postives = 204/205 (99.51%), Query Frame = 0


Query: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRT 60
           MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNM YVAILNGHNSTLCLKSAPFPRKSFRT
Sbjct: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMDYVAILNGHNSTLCLKSAPFPRKSFRT 60

Query: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120
           SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF
Sbjct: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120

Query: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180
           PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS
Sbjct: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180

Query: 181 LIVLINYWKAGVCLGLFVDAFKLGS 206
           LIVLINYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LIVLINYWKAGVCLGLFVDAFKLGS 205

[Close]

BLAST of Carg22716 vs. NCBI nr
Match: XP_038878602.1 (ycf20-like protein [Benincasa hispida] >XP_038878603.1 ycf20-like protein [Benincasa hispida] >XP_038878605.1 ycf20-like protein [Benincasa hispida] >XP_038878606.1 ycf20-like protein [Benincasa hispida])

HSP 1 Score: 348.2 bits (892), Expect = 4.8e-92
Identity = 176/205 (85.85%), Postives = 190/205 (92.68%), Query Frame = 0


Query: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRT 60
           MEA+I+QSRLLTIANY SKG CLT MPCL+H  G  A  NGHNS+  LKSA FPRKSF+T
Sbjct: 8   MEAVILQSRLLTIANYSSKGSCLTNMPCLLHYWGREAFFNGHNSSPFLKSALFPRKSFQT 67

Query: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120
           SRHL++LAFALDTGGVSSNGGGD +DDG++SNLGRTRLGRLVS+GARQLLEKLNSARKNF
Sbjct: 68  SRHLKKLAFALDTGGVSSNGGGDKVDDGDDSNLGRTRLGRLVSSGARQLLEKLNSARKNF 127

Query: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180
           PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTRRLKS
Sbjct: 128 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKS 187

Query: 181 LIVLINYWKAGVCLGLFVDAFKLGS 206
            I ++NYWKAGVCLGLFVDAFKLGS
Sbjct: 188 FIAMVNYWKAGVCLGLFVDAFKLGS 212

[Close]

BLAST of Carg22716 vs. NCBI nr
Match: XP_011660206.1 (ycf20-like protein [Cucumis sativus] >XP_011660207.1 ycf20-like protein [Cucumis sativus] >KGN66645.1 hypothetical protein Csa_007230 [Cucumis sativus])

HSP 1 Score: 340.5 bits (872), Expect = 1.0e-89
Identity = 172/205 (83.90%), Postives = 187/205 (91.22%), Query Frame = 0


Query: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRT 60
           M A+I+ SRLLT ANY  +  CLT MPCLIH  GY AI NG +S+  LKSAPFPRKS +T
Sbjct: 8   MGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPFPRKSLQT 67

Query: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120
           SRH+ +LAFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+GARQLLEKLNSARKNF
Sbjct: 68  SRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSARKNF 127

Query: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180
           PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTRRLKS
Sbjct: 128 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKS 187

Query: 181 LIVLINYWKAGVCLGLFVDAFKLGS 206
            IV++NYWKAGVCLGLFVDAFKLGS
Sbjct: 188 FIVMVNYWKAGVCLGLFVDAFKLGS 212

[Close]

BLAST of Carg22716 vs. ExPASy Swiss-Prot
Match: O80813 (Ycf20-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g65420 PE=2 SV=2)

HSP 1 Score: 202.2 bits (513), Expect = 5.6e-51
Identity = 106/164 (64.63%), Postives = 130/164 (79.27%), Query Frame = 0


Query: 44  STLCLKSAPFPRKSFRTSRHLQQLAFALDTGGVSSNGGGDNLD-DGNESNLGRTRLGRLV 103
           S++ L S P+P KSF+  R  +++AFALDTG       G+  + +G+ + LG TRLGR+ 
Sbjct: 34  SSITLTSFPYPMKSFQIRRPNRKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIA 93

Query: 104 SAGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWI 163
            AG +QLL K+NSARKNFP KIFLLLLGFYTANALATILGQTGDWDVLVAG+VVAAIE I
Sbjct: 94  IAGGKQLLGKINSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGI 153

Query: 164 GILMYKKP-PPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS 206
           G+LMYKKP   + + +L+S +V +N+WKAGVCLGLFVDAFKLGS
Sbjct: 154 GMLMYKKPSSSMFSGKLQSFVVFMNFWKAGVCLGLFVDAFKLGS 197

[Close]

BLAST of Carg22716 vs. ExPASy Swiss-Prot
Match: Q9MUL5 (Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-18
Identity = 59/117 (50.43%), Postives = 71/117 (60.68%), Query Frame = 0


Query: 93  LGRTRLGRLVSAGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVA 152
           +  TRL    +   + L  K+ +   NFP KI LLLLGF+ A  LAT+ GQTGDWDVLVA
Sbjct: 1   MSNTRLTLFFTNIFQLLDSKIQNYSINFPIKILLLLLGFFIATVLATVFGQTGDWDVLVA 60

Query: 153 GVVVAAIEWIGILMYKK----PPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS 206
           G++VA IE +G  MY K       +      SLI  INY K G+  GLFVDAFKLGS
Sbjct: 61  GILVAMIEILGNKMYSKKYISKKQVFDISFLSLIG-INYIKIGLIFGLFVDAFKLGS 116

[Close]

BLAST of Carg22716 vs. ExPASy Swiss-Prot
Match: Q1XDS2 (Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.0e-12
Identity = 44/111 (39.64%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 95  RTRLGRLVSAGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGV 154
           +TRL    +   + L  KL  +     T +  LLLGF+ +  L+TI GQTGDW ++ A +
Sbjct: 3   KTRLSTFFAYLIKNLNNKLYYSLSELTTGLISLLLGFFISTGLSTIPGQTGDWGIIAASL 62

Query: 155 VVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS 206
           +VAA E    ++Y        ++L   I L N +K G+  GLFVDAFKLGS
Sbjct: 63  IVAATELTSKIVYSS-----HKQLNIKINLFNNFKIGITYGLFVDAFKLGS 108

[Close]

BLAST of Carg22716 vs. ExPASy Swiss-Prot
Match: P51214 (Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.8e-12
Identity = 44/111 (39.64%), Postives = 61/111 (54.95%), Query Frame = 0


Query: 95  RTRLGRLVSAGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGV 154
           RT+L    S   + L  +L  +       +  LLLGF+ +  L+TI GQTGDW ++ A +
Sbjct: 3   RTKLSIFFSYFVQNLSSRLYYSLNELTAGLISLLLGFFISTGLSTIPGQTGDWGIIAASL 62

Query: 155 VVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS 206
           +VAAIE +  ++Y        R     I L+N  K G+  GLFVDAFKLGS
Sbjct: 63  IVAAIELVSKIVYSNKKKYGVR-----INLLNNLKIGITYGLFVDAFKLGS 108

[Close]

BLAST of Carg22716 vs. ExPASy Swiss-Prot
Match: P72983 (Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1509 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-07
Identity = 33/111 (29.73%), Postives = 55/111 (49.55%), Query Frame = 0


Query: 95  RTRLGRLVSAGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGV 154
           RTRL  +V    +QL +   +  +     +   L GF+   A+AT  GQ   WDV+ A  
Sbjct: 3   RTRLNTIVEVRGQQLSQFFRNPWRRISLSLLSFLFGFFVGTAVATTAGQNSQWDVVCAAF 62

Query: 155 VVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS 206
           ++   E +    Y++   +   + +    ++N +K GV   LF++AFKLGS
Sbjct: 63  ILLFCELVNRWFYRRGVKMGDLQAE----VLNIFKMGVSYSLFLEAFKLGS 109

[Close]

BLAST of Carg22716 vs. ExPASy TrEMBL
Match: A0A6J1EGC6 (ycf20-like protein OS=Cucurbita moschata OX=3662 GN=LOC111432291 PE=3 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 3.6e-109
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0


Query: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRT 60
           MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRT
Sbjct: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRT 60

Query: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120
           SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF
Sbjct: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120

Query: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180
           PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS
Sbjct: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180

Query: 181 LIVLINYWKAGVCLGLFVDAFKLGS 206
           LIVLINYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LIVLINYWKAGVCLGLFVDAFKLGS 205

[Close]

BLAST of Carg22716 vs. ExPASy TrEMBL
Match: A0A6J1ICF7 (ycf20-like protein OS=Cucurbita maxima OX=3661 GN=LOC111471783 PE=3 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 2.3e-108
Identity = 204/205 (99.51%), Postives = 204/205 (99.51%), Query Frame = 0


Query: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRT 60
           MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNM YVAILNGHNSTLCLKSAPFPRKSFRT
Sbjct: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMDYVAILNGHNSTLCLKSAPFPRKSFRT 60

Query: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120
           SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF
Sbjct: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120

Query: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180
           PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS
Sbjct: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180

Query: 181 LIVLINYWKAGVCLGLFVDAFKLGS 206
           LIVLINYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LIVLINYWKAGVCLGLFVDAFKLGS 205

[Close]

BLAST of Carg22716 vs. ExPASy TrEMBL
Match: A0A0A0LXR2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G652280 PE=3 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 4.9e-90
Identity = 172/205 (83.90%), Postives = 187/205 (91.22%), Query Frame = 0


Query: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRT 60
           M A+I+ SRLLT ANY  +  CLT MPCLIH  GY AI NG +S+  LKSAPFPRKS +T
Sbjct: 8   MGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPFPRKSLQT 67

Query: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120
           SRH+ +LAFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+GARQLLEKLNSARKNF
Sbjct: 68  SRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSARKNF 127

Query: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180
           PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTRRLKS
Sbjct: 128 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKS 187

Query: 181 LIVLINYWKAGVCLGLFVDAFKLGS 206
            IV++NYWKAGVCLGLFVDAFKLGS
Sbjct: 188 FIVMVNYWKAGVCLGLFVDAFKLGS 212

[Close]

BLAST of Carg22716 vs. ExPASy TrEMBL
Match: A0A6J1D763 (ycf20-like protein OS=Momordica charantia OX=3673 GN=LOC111018246 PE=3 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.9e-82
Identity = 164/207 (79.23%), Postives = 181/207 (87.44%), Query Frame = 0


Query: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRT 60
           M AMI+QSRLL I +Y S+G CLT + CL++  GY A+ N  NST CLKSAPFPR+SF+T
Sbjct: 6   MGAMILQSRLLKIESYSSRGSCLTNISCLVYYWGYAAVFNAQNSTRCLKSAPFPRRSFQT 65

Query: 61  SRHL--QQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARK 120
           SRHL  ++LAFALDT G+  NGG DN  DG+ESNLGRTRLGRLVS+ ARQLLEKLNSARK
Sbjct: 66  SRHLRKRKLAFALDTSGLPRNGGEDN-PDGDESNLGRTRLGRLVSSAARQLLEKLNSARK 125

Query: 121 NFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRL 180
           NFP KIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE IG+LMY+KPPPLLTRRL
Sbjct: 126 NFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGVLMYRKPPPLLTRRL 185

Query: 181 KSLIVLINYWKAGVCLGLFVDAFKLGS 206
           KS IV+INYWKAGVCLGLFVDAFKLGS
Sbjct: 186 KSFIVMINYWKAGVCLGLFVDAFKLGS 211

[Close]

BLAST of Carg22716 vs. ExPASy TrEMBL
Match: A0A5A7T5T0 (Ycf20-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00190 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 3.3e-70
Identity = 136/149 (91.28%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 57  SFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSA 116
           SF+TSRH+ ++AFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+GARQLLEKLNSA
Sbjct: 21  SFQTSRHVNKIAFALDTGGVSSSGGGDNVDDGDESNLGRTRLGRLVSSGARQLLEKLNSA 80

Query: 117 RKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR 176
           RKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTR
Sbjct: 81  RKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTR 140

Query: 177 RLKSLIVLINYWKAGVCLGLFVDAFKLGS 206
           RLKS IV++NYWKAGVCLGLFVDAFKLGS
Sbjct: 141 RLKSFIVMVNYWKAGVCLGLFVDAFKLGS 169

[Close]

BLAST of Carg22716 vs. TAIR 10
Match: AT1G65420.1 (Protein of unknown function (DUF565) )

HSP 1 Score: 202.2 bits (513), Expect = 4.0e-52
Identity = 106/164 (64.63%), Postives = 130/164 (79.27%), Query Frame = 0


Query: 44  STLCLKSAPFPRKSFRTSRHLQQLAFALDTGGVSSNGGGDNLD-DGNESNLGRTRLGRLV 103
           S++ L S P+P KSF+  R  +++AFALDTG       G+  + +G+ + LG TRLGR+ 
Sbjct: 34  SSITLTSFPYPMKSFQIRRPNRKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIA 93

Query: 104 SAGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWI 163
            AG +QLL K+NSARKNFP KIFLLLLGFYTANALATILGQTGDWDVLVAG+VVAAIE I
Sbjct: 94  IAGGKQLLGKINSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGI 153

Query: 164 GILMYKKP-PPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS 206
           G+LMYKKP   + + +L+S +V +N+WKAGVCLGLFVDAFKLGS
Sbjct: 154 GMLMYKKPSSSMFSGKLQSFVVFMNFWKAGVCLGLFVDAFKLGS 197

[Close]

BLAST of Carg22716 vs. TAIR 10
Match: AT3G56830.1 (Protein of unknown function (DUF565) )

HSP 1 Score: 111.7 bits (278), Expect = 7.1e-25
Identity = 59/145 (40.69%), Postives = 91/145 (62.76%), Query Frame = 0


Query: 62  RHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRT----RLGRLVSAGARQLLEKLNSAR 121
           RH +++++      + S+ GGD  D  + S+   +    RL + +     +LL K+   +
Sbjct: 48  RHQRRMSWTT----IKSSVGGDRFDPASGSSSNNSSRGLRLIKAIQVLRSKLLVKIQEIK 107

Query: 122 KNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRR 181
           K+ P K+F LL+GFY+A A +T +GQTGDWDVL AG+ V  +E IG LMY+   PL+  +
Sbjct: 108 KDLPKKLFFLLVGFYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRASIPLI-NK 167

Query: 182 LKSLIVLINYWKAGVCLGLFVDAFK 203
           ++S I + NYWK G+ LGLF+D+FK
Sbjct: 168 MRSTITMFNYWKTGLALGLFLDSFK 187

[Close]

BLAST of Carg22716 vs. TAIR 10
Match: AT3G56830.2 (Protein of unknown function (DUF565) )

HSP 1 Score: 111.7 bits (278), Expect = 7.1e-25
Identity = 59/145 (40.69%), Postives = 91/145 (62.76%), Query Frame = 0


Query: 62  RHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRT----RLGRLVSAGARQLLEKLNSAR 121
           RH +++++      + S+ GGD  D  + S+   +    RL + +     +LL K+   +
Sbjct: 48  RHQRRMSWTT----IKSSVGGDRFDPASGSSSNNSSRGLRLIKAIQVLRSKLLVKIQEIK 107

Query: 122 KNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRR 181
           K+ P K+F LL+GFY+A A +T +GQTGDWDVL AG+ V  +E IG LMY+   PL+  +
Sbjct: 108 KDLPKKLFFLLVGFYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRASIPLI-NK 167

Query: 182 LKSLIVLINYWKAGVCLGLFVDAFK 203
           ++S I + NYWK G+ LGLF+D+FK
Sbjct: 168 MRSTITMFNYWKTGLALGLFLDSFK 187

[Close]

BLAST of Carg22716 vs. TAIR 10
Match: AT3G56830.3 (Protein of unknown function (DUF565) )

HSP 1 Score: 111.7 bits (278), Expect = 7.1e-25
Identity = 59/145 (40.69%), Postives = 91/145 (62.76%), Query Frame = 0


Query: 62  RHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRT----RLGRLVSAGARQLLEKLNSAR 121
           RH +++++      + S+ GGD  D  + S+   +    RL + +     +LL K+   +
Sbjct: 48  RHQRRMSWTT----IKSSVGGDRFDPASGSSSNNSSRGLRLIKAIQVLRSKLLVKIQEIK 107

Query: 122 KNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRR 181
           K+ P K+F LL+GFY+A A +T +GQTGDWDVL AG+ V  +E IG LMY+   PL+  +
Sbjct: 108 KDLPKKLFFLLVGFYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRASIPLI-NK 167

Query: 182 LKSLIVLINYWKAGVCLGLFVDAFK 203
           ++S I + NYWK G+ LGLF+D+FK
Sbjct: 168 MRSTITMFNYWKTGLALGLFLDSFK 187

[Close]

BLAST of Carg22716 vs. TAIR 10
Match: AT5G43050.1 (Protein of unknown function (DUF565) )

HSP 1 Score: 42.7 bits (99), Expect = 4.0e-04
Identity = 28/79 (35.44%), Postives = 38/79 (48.10%), Query Frame = 0


Query: 127 LLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLIN 186
           LL GFY A  ++   G  G  DV+ A + V   E++    Y +            I L+N
Sbjct: 86  LLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTRFYYSRTTVTFP------IALLN 145

Query: 187 YWKAGVCLGLFVDAFKLGS 206
            +K G   GLF+DAFKL S
Sbjct: 146 NFKMGFTYGLFIDAFKLAS 158

The following BLAST results are available for this feature:

BLAST of Carg22716 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924878.1	7.4e-109	100.00	ycf20-like protein [Cucurbita moschata] >XP_022924885.1 ycf20-like protein [Cucu...	[more]
XP_023520636.1	2.2e-108	99.51	ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520637.1 ycf20-like prote...	[more]
XP_022973215.1	4.8e-108	99.51	ycf20-like protein [Cucurbita maxima] >XP_022973224.1 ycf20-like protein [Cucurb...	[more]
XP_038878602.1	4.8e-92	85.85	ycf20-like protein [Benincasa hispida] >XP_038878603.1 ycf20-like protein [Benin...	[more]
XP_011660206.1	1.0e-89	83.90	ycf20-like protein [Cucumis sativus] >XP_011660207.1 ycf20-like protein [Cucumis...	[more]

BLAST of Carg22716 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80813	5.6e-51	64.63	Ycf20-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g65420 PE=2 SV=2	[more]
Q9MUL5	1.6e-18	50.43	Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1	[more]
Q1XDS2	1.0e-12	39.64	Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1	[more]
P51214	1.8e-12	39.64	Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1	[more]
P72983	1.3e-07	29.73	Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN...	[more]

BLAST of Carg22716 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EGC6	3.6e-109	100.00	ycf20-like protein OS=Cucurbita moschata OX=3662 GN=LOC111432291 PE=3 SV=1	[more]
A0A6J1ICF7	2.3e-108	99.51	ycf20-like protein OS=Cucurbita maxima OX=3661 GN=LOC111471783 PE=3 SV=1	[more]
A0A0A0LXR2	4.9e-90	83.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G652280 PE=3 SV=1	[more]
A0A6J1D763	4.9e-82	79.23	ycf20-like protein OS=Momordica charantia OX=3673 GN=LOC111018246 PE=3 SV=1	[more]
A0A5A7T5T0	3.3e-70	91.28	Ycf20-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664...	[more]

BLAST of Carg22716 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G65420.1	4.0e-52	64.63	Protein of unknown function (DUF565)	[more]
AT3G56830.1	7.1e-25	40.69	Protein of unknown function (DUF565)	[more]
AT3G56830.2	7.1e-25	40.69	Protein of unknown function (DUF565)	[more]
AT3G56830.3	7.1e-25	40.69	Protein of unknown function (DUF565)	[more]
AT5G43050.1	4.0e-04	35.44	Protein of unknown function (DUF565)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 143..205 e-value: 2.1E-21 score: 76.1
IPR007572	Uncharacterised protein family Ycf20	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 24..205
None	No IPR available	PANTHER	PTHR33787:SF4	YCF20-LIKE PROTEIN	coord: 24..205

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22716-RA	Carg22716-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane