Carg22715 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22715
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ycf20-like protein
Location	Carg_Chr11: 4934348 .. 4936298 (-)
RNA-Seq Expression	Carg22715
Synteny	Carg22715

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGCAACACAAAGAATCGCTGTGTCAGTGATGTGTGTGCAACGAAACAGATTTTGTGACACAACTTCTACCTTCCAATGTATCAACAAATTTTTCCAGAGTGCGCAATGATGACTGTTAACCACCTCGTCCCTTTATCGTTTTTGCACGTCCCATTTCGTCCGCTATGGGTTTTCGTTCTCGGCGCTATCAATCTCCCAGCCCCCTCTTATTCAGTGTGTTTTCCGCAAGACTTTTTATTGTACATTTCTGCAGTCTTCGAAAAATGTGCAATTTGTATTTCTGCTCTGAATTTGTTGTGATTAATTGCTCACTGCGGCAGCGCAAACCTTGCATATAGAATACTCCTCCGAACAATACTTGAATGCTCACAGTTATGCGTCTACGTGAGTTTGGCGATATTTATTCTGCGCTTCCGCACCTTATTTACCTCATCGAAACGCACAACTTGATAATACTGAGCATGGATGCACACATATATTTCATGGCCACTGTTGATAATCCCTACGCTGTACAAGGGGTAGCCATTCTTCGAGAACATTCTGAAACTTATTGTACTATAATTAGTTTTGTATTAACAACTCGTTAGAGATCCTGCGTGCTCACTTGCATCGTATGGAGTTATGTGTTTAGTACAAAGCAAGGTCGATACTATCATGATTGCGACTATGATTTGTGTCAGTCTGAGTGTCAATCCTCTCAAGCGTTGTTTGCTTAGATAAACCACTGTCTTGCGCGAAGTTACTTTGGTGAGGTTATCGACGTCTCTCGCACGATCGTAGTAAATAGAGTGATATACAGAATTATTGTCTCTCCAAAGGAGTTTAATGCTCGGCCAGACATGACGGTATTTCACTCTTGCCTTATATGATGTGGTTACATTAGGTATTCATTCTCCTCGTGAGTTATTCAACTCTGTGCGTCTATTCCACTGATCGTGCATTATACTCAACTTCTCGCAATACATAGATCTACGAATGGGCTCTATTCTAATTGGTTCTACCTCTTTATCACGTTGTCGTTAATGAACCTATGCTATTCTTCTTGCAATATTTCATTTCTGTAGCTTGGAGAACTAGTAGGTCCACAAATCATGTCTTCTAACTAGTATTTGGCATGAAAACTAAAGTTTGTTGAGGCACAGAAGTTAAGGCTCGGAGAGCGAATAGTAGTAGCACTTCTAGAACAGAGGTGTATCGCAACTCAATTTTGAGGGATTTGGGTGAGGTGCTACTTATTTTATACATCCTGCATCTTGTGATAGCGTCCTTCGTTTTAATTTACTACCACTACCTCTCGCGACTTAGACCATTGAAAATTGCTCTGCCTCGTCACTTACGTAATAGGGTCGTTTCTGATAGTTTCTCTCACTAGATTCGTACTCTTCATTCTTTCATTTTTCTATATAAAAGTTTTTTTTTTTTTCTTATTTAAAAGAAGAAAAGTAAACTCCGTATCGTTGCTGTTATGAACATTTGGTTGTGATGTTACTTTTTACAGTTTCCGGACGAGTAGACATCTACAACAATTAGCCTTTGCATTAGACACAGGTGGGGTATCTAGTAACGGTGGGGGAGACAACCTTGATGATGGTAATGAGTCGAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGCGCAGGTGCCAGACAGTTGCTGGAAAAACTAAACTCAGCTAGAAAGAACTTTCCTACAAAGATATTTTTGCTTCTTTTGGGTTTCTATACAGCCAATGCTCTTGCTACAATTCTTGGGCAGACGGGTGACTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATTGAATGGATTGGTATACTCATGTACAAGAAGCCACCACCTCTATTAACTAGGAGGTTGAAATCATTAATAGTACTGATAAACTATTGGAAAGCCGGCGTATGCTTAGGCCTCTTCGTCGATGCGTTCAAATTGGGGAGTTGA

mRNA sequence

ATGTATGCAACACAAAGAATCGCTGTGTCAGTGATGTGTGTGCAACGAAACAGATTTTGTGACACAACTTCTACCTTCCAATCGCAAACCTTGCATATAGAATACTCCTCCGAACAATACTTGAATGCTCACAGTTATGCGTCTACTTTCCGGACGAGTAGACATCTACAACAATTAGCCTTTGCATTAGACACAGGTGGGGTATCTAGTAACGGTGGGGGAGACAACCTTGATGATGGTAATGAGTCGAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGCGCAGCCAATGCTCTTGCTACAATTCTTGGGCAGACGGGTGACTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATTGAATGGATTGGTATACTCATGTACAAGAAGCCACCACCTCTATTAACTAGGAGGTTGAAATCATTAATAGTACTGATAAACTATTGGAAAGCCGGCGTATGCTTAGGCCTCTTCGTCGATGCGTTCAAATTGGGGAGTTGA

Coding sequence (CDS)

ATGTATGCAACACAAAGAATCGCTGTGTCAGTGATGTGTGTGCAACGAAACAGATTTTGTGACACAACTTCTACCTTCCAATCGCAAACCTTGCATATAGAATACTCCTCCGAACAATACTTGAATGCTCACAGTTATGCGTCTACTTTCCGGACGAGTAGACATCTACAACAATTAGCCTTTGCATTAGACACAGGTGGGGTATCTAGTAACGGTGGGGGAGACAACCTTGATGATGGTAATGAGTCGAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGCGCAGCCAATGCTCTTGCTACAATTCTTGGGCAGACGGGTGACTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATTGAATGGATTGGTATACTCATGTACAAGAAGCCACCACCTCTATTAACTAGGAGGTTGAAATCATTAATAGTACTGATAAACTATTGGAAAGCCGGCGTATGCTTAGGCCTCTTCGTCGATGCGTTCAAATTGGGGAGTTGA

Protein sequence

MYATQRIAVSVMCVQRNRFCDTTSTFQSQTLHIEYSSEQYLNAHSYASTFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS

Homology

[Close]

BLAST of Carg22715 vs. NCBI nr
Match: KAG7022186.1 (Ycf20-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 327.8 bits (839), Expect = 5.5e-86
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MYATQRIAVSVMCVQRNRFCDTTSTFQSQTLHIEYSSEQYLNAHSYASTFRTSRHLQQLA 60
           MYATQRIAVSVMCVQRNRFCDTTSTFQSQTLHIEYSSEQYLNAHSYASTFRTSRHLQQLA
Sbjct: 1   MYATQRIAVSVMCVQRNRFCDTTSTFQSQTLHIEYSSEQYLNAHSYASTFRTSRHLQQLA 60

Query: 61  FALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAANALATILGQTGDWDVLVAGVVVA 120
           FALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAANALATILGQTGDWDVLVAGVVVA
Sbjct: 61  FALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAANALATILGQTGDWDVLVAGVVVA 120

Query: 121 AIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS 169
           AIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS
Sbjct: 121 AIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS 168

[Close]

BLAST of Carg22715 vs. NCBI nr
Match: KAG6588267.1 (Ycf20-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 233.8 bits (595), Expect = 1.1e-57
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 49  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAANALATILGQTG 108
           +FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAANALATILGQTG
Sbjct: 57  SFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAANALATILGQTG 116

Query: 109 DWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS 168
           DWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS
Sbjct: 117 DWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS 176

[Close]

BLAST of Carg22715 vs. NCBI nr
Match: XP_023520636.1 (ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520637.1 ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520638.1 ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520639.1 ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520640.1 ycf20-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218.4 bits (555), Expect = 4.7e-53
Identity = 119/149 (79.87%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 49  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------ 108
           +FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA            
Sbjct: 57  SFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSA 116

Query: 109 -----------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR 168
                            ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR
Sbjct: 117 RKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR 176

[Close]

BLAST of Carg22715 vs. NCBI nr
Match: XP_022924878.1 (ycf20-like protein [Cucurbita moschata] >XP_022924885.1 ycf20-like protein [Cucurbita moschata] >XP_022924895.1 ycf20-like protein [Cucurbita moschata] >XP_022924902.1 ycf20-like protein [Cucurbita moschata] >XP_022924910.1 ycf20-like protein [Cucurbita moschata] >XP_022924918.1 ycf20-like protein [Cucurbita moschata] >KAG7022187.1 Ycf20-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218.4 bits (555), Expect = 4.7e-53
Identity = 119/149 (79.87%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 49  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------ 108
           +FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA            
Sbjct: 57  SFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSA 116

Query: 109 -----------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR 168
                            ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR
Sbjct: 117 RKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR 176

[Close]

BLAST of Carg22715 vs. NCBI nr
Match: XP_022973215.1 (ycf20-like protein [Cucurbita maxima] >XP_022973224.1 ycf20-like protein [Cucurbita maxima] >XP_022973228.1 ycf20-like protein [Cucurbita maxima] >XP_022973233.1 ycf20-like protein [Cucurbita maxima] >XP_022973241.1 ycf20-like protein [Cucurbita maxima] >XP_022973250.1 ycf20-like protein [Cucurbita maxima])

HSP 1 Score: 218.4 bits (555), Expect = 4.7e-53
Identity = 119/149 (79.87%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 49  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------ 108
           +FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA            
Sbjct: 57  SFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSA 116

Query: 109 -----------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR 168
                            ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR
Sbjct: 117 RKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR 176

[Close]

BLAST of Carg22715 vs. ExPASy Swiss-Prot
Match: O80813 (Ycf20-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g65420 PE=2 SV=2)

HSP 1 Score: 124.8 bits (312), Expect = 9.3e-28
Identity = 75/151 (49.67%), Postives = 95/151 (62.91%), Query Frame = 0


Query: 49  TFRTSRHLQQLAFALDTGGVSSNGGGDNLD-DGNESNLGRTRLGRLVSA----------- 108
           +F+  R  +++AFALDTG       G+  + +G+ + LG TRLGR+  A           
Sbjct: 47  SFQIRRPNRKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIAIAGGKQLLGKINS 106

Query: 109 ------------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKP-PPLL 168
                             ANALATILGQTGDWDVLVAG+VVAAIE IG+LMYKKP   + 
Sbjct: 107 ARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSSSMF 166

[Close]

BLAST of Carg22715 vs. ExPASy Swiss-Prot
Match: Q9MUL5 (Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-11
Identity = 43/76 (56.58%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 97  ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKK----PPPLLTRRLKSLIVLINYWK 156
           A  LAT+ GQTGDWDVLVAG++VA IE +G  MY K       +      SLI  INY K
Sbjct: 42  ATVLATVFGQTGDWDVLVAGILVAMIEILGNKMYSKKYISKKQVFDISFLSLIG-INYIK 101

Query: 157 AGVCLGLFVDAFKLGS 169
            G+  GLFVDAFKLGS
Sbjct: 102 IGLIFGLFVDAFKLGS 116

[Close]

BLAST of Carg22715 vs. ExPASy Swiss-Prot
Match: P51214 (Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.7e-08
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 97  ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVC 156
           +  L+TI GQTGDW ++ A ++VAAIE +  ++Y        R     I L+N  K G+ 
Sbjct: 42  STGLSTIPGQTGDWGIIAASLIVAAIELVSKIVYSNKKKYGVR-----INLLNNLKIGIT 101

Query: 157 LGLFVDAFKLGS 169
            GLFVDAFKLGS
Sbjct: 102 YGLFVDAFKLGS 108

[Close]

BLAST of Carg22715 vs. ExPASy Swiss-Prot
Match: Q1XDS2 (Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.2e-08
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 97  ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVC 156
           +  L+TI GQTGDW ++ A ++VAA E    ++Y        ++L   I L N +K G+ 
Sbjct: 42  STGLSTIPGQTGDWGIIAASLIVAATELTSKIVYSS-----HKQLNIKINLFNNFKIGIT 101

Query: 157 LGLFVDAFKLGS 169
            GLFVDAFKLGS
Sbjct: 102 YGLFVDAFKLGS 108

[Close]

BLAST of Carg22715 vs. ExPASy Swiss-Prot
Match: P48409 (Uncharacterized protein ycf20 OS=Galdieria sulphuraria OX=130081 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.0e-05
Identity = 27/75 (36.00%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 94  VSAANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKA 153
           + ++N L TI  QTGDW + +   ++A  E I  + Y +    + +  K++I   N +K 
Sbjct: 12  IFSSNLLCTIYTQTGDWSLYLTSCIIALYEIISYISYNQ---FIKKTHKNIINCFNGFKI 71

Query: 154 GVCLGLFVDAFKLGS 169
           G+  GL++DAFKLGS
Sbjct: 72  GLIYGLYLDAFKLGS 83

[Close]

BLAST of Carg22715 vs. ExPASy TrEMBL
Match: A0A6J1ICF7 (ycf20-like protein OS=Cucurbita maxima OX=3661 GN=LOC111471783 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.3e-53
Identity = 119/149 (79.87%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 49  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------ 108
           +FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA            
Sbjct: 57  SFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSA 116

Query: 109 -----------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR 168
                            ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR
Sbjct: 117 RKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR 176

[Close]

BLAST of Carg22715 vs. ExPASy TrEMBL
Match: A0A6J1EGC6 (ycf20-like protein OS=Cucurbita moschata OX=3662 GN=LOC111432291 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.3e-53
Identity = 119/149 (79.87%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 49  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------ 108
           +FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA            
Sbjct: 57  SFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSA 116

Query: 109 -----------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR 168
                            ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR
Sbjct: 117 RKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR 176

[Close]

BLAST of Carg22715 vs. ExPASy TrEMBL
Match: A0A5A7T5T0 (Ycf20-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00190 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 2.2e-48
Identity = 106/150 (70.67%), Postives = 119/150 (79.33%), Query Frame = 0


Query: 48  STFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA----------- 107
           ++F+TSRH+ ++AFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+           
Sbjct: 20  NSFQTSRHVNKIAFALDTGGVSSSGGGDNVDDGDESNLGRTRLGRLVSSGARQLLEKLNS 79

Query: 108 ------------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLT 167
                             ANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLT
Sbjct: 80  ARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLT 139

Query: 168 RRLKSLIVLINYWKAGVCLGLFVDAFKLGS 169
           RRLKS IV++NYWKAGVCLGLFVDAFKLGS
Sbjct: 140 RRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 169

[Close]

BLAST of Carg22715 vs. ExPASy TrEMBL
Match: A0A1S3B8Z3 (ycf20-like protein OS=Cucumis melo OX=3656 GN=LOC103487471 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.8e-48
Identity = 106/148 (71.62%), Postives = 117/148 (79.05%), Query Frame = 0


Query: 50  FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------- 109
           F+TSRH+ ++AFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+             
Sbjct: 70  FQTSRHVNKIAFALDTGGVSSSGGGDNVDDGDESNLGRTRLGRLVSSGARQLLEKLNSAR 129

Query: 110 ----------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRR 169
                           ANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTRR
Sbjct: 130 KNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRR 189

[Close]

BLAST of Carg22715 vs. ExPASy TrEMBL
Match: A0A0A0LXR2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G652280 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 6.4e-48
Identity = 106/149 (71.14%), Postives = 117/149 (78.52%), Query Frame = 0


Query: 49  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------ 108
           + +TSRH+ +LAFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+            
Sbjct: 64  SLQTSRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSA 123

Query: 109 -----------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR 168
                            ANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTR
Sbjct: 124 RKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTR 183

[Close]

BLAST of Carg22715 vs. TAIR 10
Match: AT1G65420.1 (Protein of unknown function (DUF565) )

HSP 1 Score: 124.8 bits (312), Expect = 6.6e-29
Identity = 75/151 (49.67%), Postives = 95/151 (62.91%), Query Frame = 0


Query: 49  TFRTSRHLQQLAFALDTGGVSSNGGGDNLD-DGNESNLGRTRLGRLVSA----------- 108
           +F+  R  +++AFALDTG       G+  + +G+ + LG TRLGR+  A           
Sbjct: 47  SFQIRRPNRKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIAIAGGKQLLGKINS 106

Query: 109 ------------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKP-PPLL 168
                             ANALATILGQTGDWDVLVAG+VVAAIE IG+LMYKKP   + 
Sbjct: 107 ARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSSSMF 166

[Close]

BLAST of Carg22715 vs. TAIR 10
Match: AT3G56830.1 (Protein of unknown function (DUF565) )

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-15
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 96  AANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGV 155
           +A A +T +GQTGDWDVL AG+ V  +E IG LMY+   PL+  +++S I + NYWK G+
Sbjct: 119 SATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRASIPLI-NKMRSTITMFNYWKTGL 178

Query: 156 CLGLFVDAFK 166
            LGLF+D+FK
Sbjct: 179 ALGLFLDSFK 187

[Close]

BLAST of Carg22715 vs. TAIR 10
Match: AT3G56830.2 (Protein of unknown function (DUF565) )

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-15
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 96  AANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGV 155
           +A A +T +GQTGDWDVL AG+ V  +E IG LMY+   PL+  +++S I + NYWK G+
Sbjct: 119 SATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRASIPLI-NKMRSTITMFNYWKTGL 178

Query: 156 CLGLFVDAFK 166
            LGLF+D+FK
Sbjct: 179 ALGLFLDSFK 187

[Close]

BLAST of Carg22715 vs. TAIR 10
Match: AT3G56830.3 (Protein of unknown function (DUF565) )

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-15
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 96  AANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGV 155
           +A A +T +GQTGDWDVL AG+ V  +E IG LMY+   PL+  +++S I + NYWK G+
Sbjct: 119 SATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRASIPLI-NKMRSTITMFNYWKTGL 178

Query: 156 CLGLFVDAFK 166
            LGLF+D+FK
Sbjct: 179 ALGLFLDSFK 187

The following BLAST results are available for this feature:

BLAST of Carg22715 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022186.1	5.5e-86	100.00	Ycf20-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6588267.1	1.1e-57	99.17	Ycf20-like protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023520636.1	4.7e-53	79.87	ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520637.1 ycf20-like prote...	[more]
XP_022924878.1	4.7e-53	79.87	ycf20-like protein [Cucurbita moschata] >XP_022924885.1 ycf20-like protein [Cucu...	[more]
XP_022973215.1	4.7e-53	79.87	ycf20-like protein [Cucurbita maxima] >XP_022973224.1 ycf20-like protein [Cucurb...	[more]

BLAST of Carg22715 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80813	9.3e-28	49.67	Ycf20-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g65420 PE=2 SV=2	[more]
Q9MUL5	1.6e-11	56.58	Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1	[more]
P51214	3.7e-08	45.83	Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1	[more]
Q1XDS2	8.2e-08	44.44	Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1	[more]
P48409	1.0e-05	36.00	Uncharacterized protein ycf20 OS=Galdieria sulphuraria OX=130081 GN=ycf20 PE=3 S...	[more]

BLAST of Carg22715 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ICF7	2.3e-53	79.87	ycf20-like protein OS=Cucurbita maxima OX=3661 GN=LOC111471783 PE=3 SV=1	[more]
A0A6J1EGC6	2.3e-53	79.87	ycf20-like protein OS=Cucurbita moschata OX=3662 GN=LOC111432291 PE=3 SV=1	[more]
A0A5A7T5T0	2.2e-48	70.67	Ycf20-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664...	[more]
A0A1S3B8Z3	3.8e-48	71.62	ycf20-like protein OS=Cucumis melo OX=3656 GN=LOC103487471 PE=3 SV=1	[more]
A0A0A0LXR2	6.4e-48	71.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G652280 PE=3 SV=1	[more]

BLAST of Carg22715 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G65420.1	6.6e-29	49.67	Protein of unknown function (DUF565)	[more]
AT3G56830.1	2.4e-15	52.86	Protein of unknown function (DUF565)	[more]
AT3G56830.2	2.4e-15	52.86	Protein of unknown function (DUF565)	[more]
AT3G56830.3	2.4e-15	52.86	Protein of unknown function (DUF565)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 106..168 e-value: 1.4E-21 score: 76.7
IPR007572	Uncharacterised protein family Ycf20	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 12..97
IPR007572	Uncharacterised protein family Ycf20	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 96..168
None	No IPR available	PANTHER	PTHR33787:SF4	YCF20-LIKE PROTEIN	coord: 12..97
None	No IPR available	PANTHER	PTHR33787:SF4	YCF20-LIKE PROTEIN	coord: 96..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22715-RA	Carg22715-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane