Carg22690 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22690
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	BHLH domain-containing protein
Location	Carg_Chr11: 4728262 .. 4728514 (-)
RNA-Seq Expression	Carg22690
Synteny	Carg22690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCAGATCATGGCAGTCTACAAGATTCAGACCTGTGGGATAGTGTAGGTTTTTTCAGCAGAAACCGGTTTTCGCTGGTTCTGCTCTGTTTCACTTTCATTACACCCTTTTCTCCCTTTCTCTCAAGCTTTCGGCTCGCCGGAGCATGGCTTGCCGTAGAAAAATTGTGGGAAATCTTGACCCAGAAAGGAAAAGAAGTGGTGGTTTGAGAACGAAGCAGGCGGGGAGAGGATCGTGCCGGGGAAGTTAG

mRNA sequence

ATGGAGCAGATCATGGCAGTCTACAAGATTCAGACCTGTGGGATAGTGTTTTTTCAGCAGAAACCGGTTTTCGCTGGTTCTGCTCTGTTTCACTTTCATTACACCCTTTTCTCCCTTTCTCTCAAGCTTTCGGCTCGCCGGAGCATGGCTTGCCGTAGAAAAATTGTGGGAAATCTTGACCCAGAAAGGAAAAGAAGTGGTGGTTTGAGAACGAAGCAGGCGGGGAGAGGATCGTGCCGGGGAAGTTAG

Coding sequence (CDS)

ATGGAGCAGATCATGGCAGTCTACAAGATTCAGACCTGTGGGATAGTGTTTTTTCAGCAGAAACCGGTTTTCGCTGGTTCTGCTCTGTTTCACTTTCATTACACCCTTTTCTCCCTTTCTCTCAAGCTTTCGGCTCGCCGGAGCATGGCTTGCCGTAGAAAAATTGTGGGAAATCTTGACCCAGAAAGGAAAAGAAGTGGTGGTTTGAGAACGAAGCAGGCGGGGAGAGGATCGTGCCGGGGAAGTTAG

Protein sequence

MEQIMAVYKIQTCGIVFFQQKPVFAGSALFHFHYTLFSLSLKLSARRSMACRRKIVGNLDPERKRSGGLRTKQAGRGSCRGS

Homology

[Close]

BLAST of Carg22690 vs. NCBI nr
Match: KAG7023802.1 (hypothetical protein SDJN02_14828, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.0 bits (188), Expect = 8.3e-11
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 42  KLSARRSMACRRKIVGNLDPERKRSGGLRTKQAGRGSCRGS 83
           KLSARRSMACRR+IVGN+DP RKRSGGLRTKQAGRGSCRGS
Sbjct: 66  KLSARRSMACRRRIVGNIDPVRKRSGGLRTKQAGRGSCRGS 106

[Close]

BLAST of Carg22690 vs. NCBI nr
Match: KAG6588244.1 (Transcription factor LHW, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.6 bits (166), Expect = 2.9e-08
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 49 MACRRKIVGNLDPERKRSGGLRTKQAGRGSCRGS 83
          MACRRKIVGNLDPERKRSGGLRTKQAGRGSCRG+
Sbjct: 1  MACRRKIVGNLDPERKRSGGLRTKQAGRGSCRGT 34

[Close]

BLAST of Carg22690 vs. NCBI nr
Match: XP_016900899.1 (PREDICTED: uncharacterized protein LOC103491944 [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 2.9e-08
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 49 MACRRKIVGNLDPERKRSGGLRTKQAGRGSCRGS 83
          MACRR+IVGNLDPERKRSGGLRTKQAGRGSCRGS
Sbjct: 1  MACRRRIVGNLDPERKRSGGLRTKQAGRGSCRGS 34

[Close]

BLAST of Carg22690 vs. NCBI nr
Match: PIN10641.1 (hypothetical protein CDL12_16762 [Handroanthus impetiginosus] >PIN20375.1 hypothetical protein CDL12_06936 [Handroanthus impetiginosus])

HSP 1 Score: 64.7 bits (156), Expect = 4.3e-07
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 49 MACRRKIVGNLDPERKRSGGLRTKQAGRGSCRGS 83
          MAC+R I GNLDPERKRSGGLRTKQAGRGSCRGS
Sbjct: 1  MACKRMIAGNLDPERKRSGGLRTKQAGRGSCRGS 34

[Close]

BLAST of Carg22690 vs. NCBI nr
Match: KAG5131831.1 (hypothetical protein JHK84_038228 [Glycine max])

HSP 1 Score: 63.9 bits (154), Expect = 7.3e-07
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 47 RSMACRRKIVGNLDPERKRSGGLRTKQAGRGSCRGS 83
          R MACR+ + GNLDP+RKRSGGLRTKQAGRGSCRGS
Sbjct: 36 RRMACRKFVTGNLDPQRKRSGGLRTKQAGRGSCRGS 71

[Close]

BLAST of Carg22690 vs. ExPASy TrEMBL
Match: A0A1S4DY36 (uncharacterized protein LOC103491944 OS=Cucumis melo OX=3656 GN=LOC103491944 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.4e-08
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 49 MACRRKIVGNLDPERKRSGGLRTKQAGRGSCRGS 83
          MACRR+IVGNLDPERKRSGGLRTKQAGRGSCRGS
Sbjct: 1  MACRRRIVGNLDPERKRSGGLRTKQAGRGSCRGS 34

[Close]

BLAST of Carg22690 vs. ExPASy TrEMBL
Match: A0A2C9W1D8 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G060200 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.4e-08
Identity = 41/82 (50.00%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 1  MEQIMAVYKIQTCGIVFFQQKPVFAGSALFHFHYTLFSLSLKLSARRSMACRRKIVGNLD 60
          MEQI A +K++ CG                           KL   R M CRR + GNLD
Sbjct: 1  MEQIKATFKLEACG-------------------------DFKLLISR-MVCRRMVAGNLD 56

Query: 61 PERKRSGGLRTKQAGRGSCRGS 83
          PERKRSGGLRTKQAGRGSCRGS
Sbjct: 61 PERKRSGGLRTKQAGRGSCRGS 56

[Close]

BLAST of Carg22690 vs. ExPASy TrEMBL
Match: A0A2G9GZE1 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_06936 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.1e-07
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 49 MACRRKIVGNLDPERKRSGGLRTKQAGRGSCRGS 83
          MAC+R I GNLDPERKRSGGLRTKQAGRGSCRGS
Sbjct: 1  MACKRMIAGNLDPERKRSGGLRTKQAGRGSCRGS 34

[Close]

BLAST of Carg22690 vs. ExPASy TrEMBL
Match: B9RIZ7 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1753030 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.5e-07
Identity = 41/84 (48.81%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 1  MEQIMAVYKIQTCGIVFFQQKPVFAGSALFHFHYTLFSLSLKLSARRSMACRRK--IVGN 60
          MEQIMA++K++ C     ++K +F                        M CRR   I GN
Sbjct: 1  MEQIMAIFKLEAC-----EKKSLF---------------------DCGMGCRRMKIIAGN 58

Query: 61 LDPERKRSGGLRTKQAGRGSCRGS 83
          LDPERKRSGGLRTKQAGRGSCRGS
Sbjct: 61 LDPERKRSGGLRTKQAGRGSCRGS 58

[Close]

BLAST of Carg22690 vs. ExPASy TrEMBL
Match: V7BY75 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G119500g PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.6e-07
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 49 MACRRKIVGNLDPERKRSGGLRTKQAGRGSCRGS 83
          MACR  +VGNLDP+RKRSGGLRTKQAGRGSCRGS
Sbjct: 1  MACRELVVGNLDPQRKRSGGLRTKQAGRGSCRGS 34

[Close]

BLAST of Carg22690 vs. TAIR 10
Match: AT2G27228.1 (conserved peptide upstream open reading frame 6 )

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-08
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 49 MACRRKIVGNLDPERKRSGGLRTKQAGRGSCRGS 83
          MACR  I  +LDPERK+SGGLRTKQAGRGSCRGS
Sbjct: 1  MACRSMIAFSLDPERKQSGGLRTKQAGRGSCRGS 34

The following BLAST results are available for this feature:

BLAST of Carg22690 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023802.1	8.3e-11	92.68	hypothetical protein SDJN02_14828, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6588244.1	2.9e-08	97.06	Transcription factor LHW, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_016900899.1	2.9e-08	97.06	PREDICTED: uncharacterized protein LOC103491944 [Cucumis melo]	[more]
PIN10641.1	4.3e-07	91.18	hypothetical protein CDL12_16762 [Handroanthus impetiginosus] >PIN20375.1 hypoth...	[more]
KAG5131831.1	7.3e-07	83.33	hypothetical protein JHK84_038228 [Glycine max]	[more]

BLAST of Carg22690 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg22690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DY36	1.4e-08	97.06	uncharacterized protein LOC103491944 OS=Cucumis melo OX=3656 GN=LOC103491944 PE=...	[more]
A0A2C9W1D8	2.4e-08	50.00	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G060200 PE=4 SV=...	[more]
A0A2G9GZE1	2.1e-07	91.18	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_06936 P...	[more]
B9RIZ7	3.5e-07	48.81	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1753030 PE=4 SV=1	[more]
V7BY75	4.6e-07	88.24	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G119500g PE=4 ...	[more]

BLAST of Carg22690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27228.1	1.1e-08	82.35	conserved peptide upstream open reading frame 6	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22690-RA	Carg22690-RA	mRNA