Carg22657 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22657
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	R3H domain containing protein
Location	Carg_Chr12: 8890739 .. 8894005 (-)
RNA-Seq Expression	Carg22657
Synteny	Carg22657

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCTTATTGATGATATTTGACTCCGCAGGTGGAGGAGTTGGCCTTCCTTGTGAAGGAAAACCTCCCTAGCAAGCATCTTATTCTATCCATGGAAGACGTTTTCGTCAAGTTTCTTCAGGATGAAATCAGGTAATGTGTTGGATGATGATTACATGATGTTAGTTAGGTACTCTATGATATTATATTTGAAGTAGTTGTTCGAATTCTTTATGATATGCAACTGAAAGAAAAGGGGCAGTTTGAATGTCAGGTTGTTCTTATTTTACCCAAAGGGTTTGAATTAGGCTCCCGATCGTCCGATCGTATTCCTCCCGAGATTAAAGAAAAGTTGGGCAATCTGTCTTTGCAAAGCTATCGTCCAATTTAGTAATACTTTTGTGTTTCAATTCCACCCAAGTGTGAAAGGGAAAAGTGGAAGGTTATGGGCTCAAACAATGGTAGTTATCTATTTAGAGGATAGCAACCACTTTTTATTCTGATGTTTGGTGCACTACTTCTCAAATTTCACGTTTATCATGCATTTGAATAGCTTTATATTTACATTGTTCTTTACCTATGGCTTGAATGGTGATCACTAACTTCAAATAATTGTTGCGGGTAGCAGTTCAGATGGAATCTTGGAGTTGGAACCAATGGATTCATACAACCGTCTTCTGTTGCATCGACTTGCTGATATTTTTGGGTGCCTTTTTCCCCCTCAATATTTTTTCTAGTTTGTATAATGCTGAATTCTTAACTTTCTATGTCAAACTTTATGCCTACCTTCCTAAGTTTGTTCTTCTTCCCAATTCCTCTCTCAGATTTGCCCATGTATCAGTTGGTGAAGGCGTTGATAGGCACTTGGTTTTGGAGCGATGCCCAGAGTCATCAATGTATTGAGAAATTCCTTACCTGAATTCCTTTTGGTTTAATATTTTCATATTCTAAATTGTTATTGATATTGCATTTGATCTGATGTTGAAGCTAGGAATTTGAACAATTTCCGCGTCTGTGCGTTTTCTTTACACGTTGAAATAATTGAATAGAAAATTCACCCTCATTTTTCTTTTCTTATGAACATCTTCTCTATAGAAAAATGTTTTACTTTGAATTGGAGTTAGGCTTTTGAGATCTTTTATTATTTTTTGTATTGAAATAATTGAATAAACCTCTTAGTCCCCTTGATTTTGATTCAATGCAATGAACTCTTAGTCCTTTCTGCCTTTGATCAGCTCCACTAGGAATCCGTCCTGTTGTGAAATTTAGTCTGTATTAGGAGGAAATGCAATCCAAGCTTTTCTCTAGTTGTCCTTGAATACAAGTAGGGATTACATACCACCCTCTCTCTCCCTTGCTATTGTGATTCACATTCTATTGGTTTTTCCCCCAAGTCGTACATCGACTCAGAGGGAGAAGATTTGGACTGCATAGGCACACGTCATAAGCTATATGGAAAGATGGACTATTTGTAATTCATATCCATTAAGTTTTATTTAGGACAAAAAAAAACATTGGGATGTCATTTATTTCTTCATCGTAGTTAACGTATTGCTTAAAGTGAAACGAGGATTCTTATATTTACGAACTATGAAACTGAAGGGGTATGGTAGAGACATGGGTGGTTCTAATATAAGGTCATTGGTTCATTAGCTTATTTGTGTATTGCAGGCCGTCCATTCTTGTGAGTGATATTCTGTGGGAGTACGATGAACCTCAAATTTCAACAATACCACACCAACTGTTAAGGAGAAAGGAAAACTCTTCTGGTACGCTTATTATTTCATACAGCATAATTAGTACCTAAAGCTTACATGTGCACTAATAGTGGACTTGTGGCCATTTGAAGATAGCAGAGGAGATAGTATGAACTTGTAATATTAATTTGTGAAAGTTCCCTGGTGTGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATATAATGGCATCAAAGGGAGTGCTGCAGTGTGGAGAAACGTTGCTGTAGAGTAGAATAAAAGGTCTTCTCGGTAGGATTTTGATATGGATTCTAGATCTGAAGATTGAAGTTTAGGGAGAAAAGTAACTCTATGATAGAATGTGTATGTAAATATCTCTTTTTGGGGGTAAAACTGTTCCAGTTTTCTCATGTACATGGAAGTTTGTTCAATCCTAAATTTGCAGATTTTCTTTCAGAAGGATTATAAGAAACTGAGTTGCCTGTACTTGATGTTCTATTTCAGTGAGTTTGAAGAAATCGCCTCCTCAACAAACTTTCGAAGAGAGAGAAGCAGCCTATCTGGCTGTTCGTGAGCGAATTTTCATGATGCACATAGGAGAAGACAGTGAACCTGAGAAGCCAAAGCCACGCTGTGATCCCGTGGTTGCACGCCGCATGATTGCACATGCACTGGGGAAGAGAATAAATTCATCTCCTGAAGCTACTACCAACCATTGCAAAGAGCAAGGAAGTGTAGCAAACAACGCACACGTCCAAGCAAATGAATTGAAGGAGCCTGATTCTACTGTGGAAGTTGTTAACAAAACCAAATTGCAGGCAGATCAATGTGTGAACTCAAAGAACGAAGCGGGTAAGAATCGTAATCCAATTCGGTCATCGGCAAGGGGAAGTAATGCTGCTGCTGCCAAAATGAAAGCAGACAAGAGTTCTCCAAAGGCAAGTTGTGTTGACAATGAGTACTTGAAGAGGGAACATTTAGGAGCAGCAAAGCGGATGTTTTCTCAGGCTTTGGGCAAGCAGAGCCGGAAGAATGAGTCTCTTCCAACACGGTGAGGGGAAGCAGACCTTTTGTAGCTCTTATTTTCTGGCCTGACCTTATGTCCTAAGTTGTCAGGATTACTGGTGCCGACAAAAAGATTCATGAGCGATAATGTATGAAGAACGTGGTTGTCATCGGCGACCTGACCGGGACGGATAAAAATGCTCACAGCTGCTACAGCTAGCCTATGTTGCCAATAGATTTGGCGAACATAAGAATCTAACATTACGTTCTCTAGATTATGTATTCCTTGTATGTGCTCGGAATTTGTCCCGGTCGTTTAAGCAGCGCTGTATGAGAAGATTGAATTACGTGGGTCGAGTGGAGTCGTAAGGAAAAGGTTATGGTACTATAAATTGGGAACAGATCTGTTCACTGATTGAGCTGTGCATAGCTGAGTTTTATGTTGGTCAAAGTAAAGGTTTCTAACTTAAATTTATGTTAAGAGTTCTTGCTTTATTAGATCCTCTCTCTTTGCTGCTGATGCTTAATGTTGAGCATCTTGTGTGTCGTCATTCAATATATACTTG

mRNA sequence

CTCCTTATTGATGATATTTGACTCCGCAGGTGGAGGAGTTGGCCTTCCTTGTGAAGGAAAACCTCCCTAGCAAGCATCTTATTCTATCCATGGAAGACGTTTTCGTCAAGTTTCTTCAGGATGAAATCAGTTCAGATGGAATCTTGGAGTTGGAACCAATGGATTCATACAACCGTCTTCTGTTGCATCGACTTGCTGATATTTTTGGGTGCCTTTTTCCCCCTCAATATTTTTTCTAGTTTGTATAATGCTGAATTCTTAACTTTCTATGTCAAACTTTATGCCTACCTTCCTAAGTTTGTTCTTCTTCCCAATTCCTCTCTCAGATTTGCCCATGTATCAGTTGGTGAAGGCGTTGATAGGCACTTGGTTTTGGAGCGATGCCCAGAGTCATCAATGCCGTCCATTCTTGTGAGTGATATTCTGTGGGAGTACGATGAACCTCAAATTTCAACAATACCACACCAACTGTTAAGGAGAAAGGAAAACTCTTCTGTGAGTTTGAAGAAATCGCCTCCTCAACAAACTTTCGAAGAGAGAGAAGCAGCCTATCTGGCTGTTCGTGAGCGAATTTTCATGATGCACATAGGAGAAGACAGTGAACCTGAGAAGCCAAAGCCACGCTGTGATCCCGTGGTTGCACGCCGCATGATTGCACATGCACTGGGGAAGAGAATAAATTCATCTCCTGAAGCTACTACCAACCATTGCAAAGAGCAAGGAAGTGTAGCAAACAACGCACACGTCCAAGCAAATGAATTGAAGGAGCCTGATTCTACTGTGGAAGTTGTTAACAAAACCAAATTGCAGGCAGATCAATGTGTGAACTCAAAGAACGAAGCGGGTAAGAATCGTAATCCAATTCGGTCATCGGCAAGGGGAAGTAATGCTGCTGCTGCCAAAATGAAAGCAGACAAGAGTTCTCCAAAGGCAAGTTGTGTTGACAATGAGTACTTGAAGAGGGAACATTTAGGAGCAGCAAAGCGGATGTTTTCTCAGGCTTTGGGCAAGCAGAGCCGGAAGAATGAGTCTCTTCCAACACGGTGAGGGGAAGCAGACCTTTTGTAGCTCTTATTTTCTGGCCTGACCTTATGTCCTAAGTTGTCAGGATTACTGGTGCCGACAAAAAGATTCATGAGCGATAATGTATGAAGAACGTGGTTGTCATCGGCGACCTGACCGGGACGGATAAAAATGCTCACAGCTGCTACAGCTAGCCTATGTTGCCAATAGATTTGGCGAACATAAGAATCTAACATTACGTTCTCTAGATTATGTATTCCTTGTATGTGCTCGGAATTTGTCCCGGTCGTTTAAGCAGCGCTGTATGAGAAGATTGAATTACGTGGGTCGAGTGGAGTCGTAAGGAAAAGGTTATGGTACTATAAATTGGGAACAGATCTGTTCACTGATTGAGCTGTGCATAGCTGAGTTTTATGTTGGTCAAAGTAAAGGTTTCTAACTTAAATTTATGTTAAGAGTTCTTGCTTTATTAGATCCTCTCTCTTTGCTGCTGATGCTTAATGTTGAGCATCTTGTGTGTCGTCATTCAATATATACTTG

Coding sequence (CDS)

ATGAAATCAGTTCAGATGGAATCTTGGAGTTGGAACCAATGGATTCATACAACCGTCTTCTGTTGCATCGACTTGCTGATATTTTTGGGTGCCTTTTTCCCCCTCAATATTTTTTCTAGTTTGTATAATGCTGAATTCTTAACTTTCTATGTCAAACTTTATGCCTACCTTCCTAAGTTTGTTCTTCTTCCCAATTCCTCTCTCAGATTTGCCCATGTATCAGTTGGTGAAGGCGTTGATAGGCACTTGGTTTTGGAGCGATGCCCAGAGTCATCAATGCCGTCCATTCTTGTGAGTGATATTCTGTGGGAGTACGATGAACCTCAAATTTCAACAATACCACACCAACTGTTAAGGAGAAAGGAAAACTCTTCTGTGAGTTTGAAGAAATCGCCTCCTCAACAAACTTTCGAAGAGAGAGAAGCAGCCTATCTGGCTGTTCGTGAGCGAATTTTCATGATGCACATAGGAGAAGACAGTGAACCTGAGAAGCCAAAGCCACGCTGTGATCCCGTGGTTGCACGCCGCATGATTGCACATGCACTGGGGAAGAGAATAAATTCATCTCCTGAAGCTACTACCAACCATTGCAAAGAGCAAGGAAGTGTAGCAAACAACGCACACGTCCAAGCAAATGAATTGAAGGAGCCTGATTCTACTGTGGAAGTTGTTAACAAAACCAAATTGCAGGCAGATCAATGTGTGAACTCAAAGAACGAAGCGGGTAAGAATCGTAATCCAATTCGGTCATCGGCAAGGGGAAGTAATGCTGCTGCTGCCAAAATGAAAGCAGACAAGAGTTCTCCAAAGGCAAGTTGTGTTGACAATGAGTACTTGAAGAGGGAACATTTAGGAGCAGCAAAGCGGATGTTTTCTCAGGCTTTGGGCAAGCAGAGCCGGAAGAATGAGTCTCTTCCAACACGGTGA

Protein sequence

MKSVQMESWSWNQWIHTTVFCCIDLLIFLGAFFPLNIFSSLYNAEFLTFYVKLYAYLPKFVLLPNSSLRFAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLKKSPPQQTFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSSPEATTNHCKEQGSVANNAHVQANELKEPDSTVEVVNKTKLQADQCVNSKNEAGKNRNPIRSSARGSNAAAAKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRKNESLPTR

Homology

[Close]

BLAST of Carg22657 vs. NCBI nr
Match: KAG7020962.1 (hypothetical protein SDJN02_17650 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 605.1 bits (1559), Expect = 3.3e-169
Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 0


Query: 1   MKSVQMESWSWNQWIHTTVFCCIDLLIFLGAFFPLNIFSSLYNAEFLTFYVKLYAYLPKF 60
           MKSVQMESWSWNQWIHTTVFCCIDLLIFLGAFFPLNIFSSLYNAEFLTFYVKLYAYLPKF
Sbjct: 1   MKSVQMESWSWNQWIHTTVFCCIDLLIFLGAFFPLNIFSSLYNAEFLTFYVKLYAYLPKF 60

Query: 61  VLLPNSSLRFAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRR 120
           VLLPNSSLRFAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRR
Sbjct: 61  VLLPNSSLRFAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRR 120

Query: 121 KENSSVSLKKSPPQQTFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAH 180
           KENSSVSLKKSPPQQTFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAH
Sbjct: 121 KENSSVSLKKSPPQQTFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAH 180

Query: 181 ALGKRINSSPEATTNHCKEQGSVANNAHVQANELKEPDSTVEVVNKTKLQADQCVNSKNE 240
           ALGKRINSSPEATTNHCKEQGSVANNAHVQANELKEPDSTVEVVNKTKLQADQCVNSKNE
Sbjct: 181 ALGKRINSSPEATTNHCKEQGSVANNAHVQANELKEPDSTVEVVNKTKLQADQCVNSKNE 240

Query: 241 AGKNRNPIRSSARGSNAAAAKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSR 300
           AGKNRNPIRSSARGSNAAAAKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSR
Sbjct: 241 AGKNRNPIRSSARGSNAAAAKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSR 300

Query: 301 KNESLPTR 309
           KNESLPTR
Sbjct: 301 KNESLPTR 308

[Close]

BLAST of Carg22657 vs. NCBI nr
Match: KAG6586140.1 (TATA box-binding protein-associated factor RNA polymerase I subunit B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 460.3 bits (1183), Expect = 1.3e-125
Identity = 236/239 (98.74%), Postives = 238/239 (99.58%), Query Frame = 0


Query: 70   FAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLK 129
            FAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLK
Sbjct: 767  FAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLK 826

Query: 130  KSPPQQTFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS 189
            KSPPQ+TFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS
Sbjct: 827  KSPPQRTFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS 886

Query: 190  PEATTNHCKEQGSVANNAHVQANELKEPDSTVEVVNKTKLQADQCVNSKNEAGKNRNPIR 249
            PEATTNHCKEQGSVANNAHVQANELKEPDSTVEVVNKTKLQ DQCVNSKNEAGKNRNPIR
Sbjct: 887  PEATTNHCKEQGSVANNAHVQANELKEPDSTVEVVNKTKLQPDQCVNSKNEAGKNRNPIR 946

Query: 250  SSARGSNAAAAKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRKNESLPTR 309
            SSARGSN+AAAKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRKNESLPTR
Sbjct: 947  SSARGSNSAAAKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRKNESLPTR 1005

[Close]

BLAST of Carg22657 vs. NCBI nr
Match: XP_022937642.1 (uncharacterized protein LOC111443986 isoform X1 [Cucurbita moschata])

HSP 1 Score: 458.0 bits (1177), Expect = 6.5e-125
Identity = 235/239 (98.33%), Postives = 237/239 (99.16%), Query Frame = 0


Query: 70  FAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLK 129
           FAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLK
Sbjct: 69  FAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLK 128

Query: 130 KSPPQQTFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS 189
           KSPPQ+TFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS
Sbjct: 129 KSPPQRTFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS 188

Query: 190 PEATTNHCKEQGSVANNAHVQANELKEPDSTVEVVNKTKLQADQCVNSKNEAGKNRNPIR 249
           PEATTNHCKEQGSVANNAHVQANELKEPDSTVEVVNKTKLQ DQCVNSKNEAGKNRNPIR
Sbjct: 189 PEATTNHCKEQGSVANNAHVQANELKEPDSTVEVVNKTKLQPDQCVNSKNEAGKNRNPIR 248

Query: 250 SSARGSNAAAAKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRKNESLPTR 309
           SSARGSN+AAAKMKADKSSPKASCVDNEYL REHLGAAKRMFSQALGKQSRKNESLPTR
Sbjct: 249 SSARGSNSAAAKMKADKSSPKASCVDNEYLTREHLGAAKRMFSQALGKQSRKNESLPTR 307

[Close]

BLAST of Carg22657 vs. NCBI nr
Match: XP_022937643.1 (uncharacterized protein LOC111443986 isoform X2 [Cucurbita moschata])

HSP 1 Score: 458.0 bits (1177), Expect = 6.5e-125
Identity = 235/239 (98.33%), Postives = 237/239 (99.16%), Query Frame = 0


Query: 70  FAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLK 129
           FAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLK
Sbjct: 18  FAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLK 77

Query: 130 KSPPQQTFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS 189
           KSPPQ+TFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS
Sbjct: 78  KSPPQRTFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS 137

Query: 190 PEATTNHCKEQGSVANNAHVQANELKEPDSTVEVVNKTKLQADQCVNSKNEAGKNRNPIR 249
           PEATTNHCKEQGSVANNAHVQANELKEPDSTVEVVNKTKLQ DQCVNSKNEAGKNRNPIR
Sbjct: 138 PEATTNHCKEQGSVANNAHVQANELKEPDSTVEVVNKTKLQPDQCVNSKNEAGKNRNPIR 197

Query: 250 SSARGSNAAAAKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRKNESLPTR 309
           SSARGSN+AAAKMKADKSSPKASCVDNEYL REHLGAAKRMFSQALGKQSRKNESLPTR
Sbjct: 198 SSARGSNSAAAKMKADKSSPKASCVDNEYLTREHLGAAKRMFSQALGKQSRKNESLPTR 256

[Close]

BLAST of Carg22657 vs. NCBI nr
Match: XP_023538509.1 (uncharacterized protein LOC111799266 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 449.1 bits (1154), Expect = 3.0e-122
Identity = 231/239 (96.65%), Postives = 236/239 (98.74%), Query Frame = 0


Query: 70  FAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLK 129
           F+HVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLK
Sbjct: 69  FSHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLK 128

Query: 130 KSPPQQTFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS 189
           KSPPQ++FEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS
Sbjct: 129 KSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS 188

Query: 190 PEATTNHCKEQGSVANNAHVQANELKEPDSTVEVVNKTKLQADQCVNSKNEAGKNRNPIR 249
           PEAT+NH KEQGSVANNA+VQANELKEPDSTVEVVNKTKLQ DQCVNSKNEAGKNRNPIR
Sbjct: 189 PEATSNHSKEQGSVANNAYVQANELKEPDSTVEVVNKTKLQPDQCVNSKNEAGKNRNPIR 248

Query: 250 SSARGSNAAAAKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRKNESLPTR 309
           SSARGSNAAA KMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRKNESLPTR
Sbjct: 249 SSARGSNAAAPKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRKNESLPTR 307

[Close]

BLAST of Carg22657 vs. ExPASy TrEMBL
Match: A0A6J1FBT0 (uncharacterized protein LOC111443986 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443986 PE=4 SV=1)

HSP 1 Score: 458.0 bits (1177), Expect = 3.1e-125
Identity = 235/239 (98.33%), Postives = 237/239 (99.16%), Query Frame = 0


Query: 70  FAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLK 129
           FAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLK
Sbjct: 69  FAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLK 128

Query: 130 KSPPQQTFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS 189
           KSPPQ+TFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS
Sbjct: 129 KSPPQRTFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS 188

Query: 190 PEATTNHCKEQGSVANNAHVQANELKEPDSTVEVVNKTKLQADQCVNSKNEAGKNRNPIR 249
           PEATTNHCKEQGSVANNAHVQANELKEPDSTVEVVNKTKLQ DQCVNSKNEAGKNRNPIR
Sbjct: 189 PEATTNHCKEQGSVANNAHVQANELKEPDSTVEVVNKTKLQPDQCVNSKNEAGKNRNPIR 248

Query: 250 SSARGSNAAAAKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRKNESLPTR 309
           SSARGSN+AAAKMKADKSSPKASCVDNEYL REHLGAAKRMFSQALGKQSRKNESLPTR
Sbjct: 249 SSARGSNSAAAKMKADKSSPKASCVDNEYLTREHLGAAKRMFSQALGKQSRKNESLPTR 307

[Close]

BLAST of Carg22657 vs. ExPASy TrEMBL
Match: A0A6J1FGJ0 (uncharacterized protein LOC111443986 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443986 PE=4 SV=1)

HSP 1 Score: 458.0 bits (1177), Expect = 3.1e-125
Identity = 235/239 (98.33%), Postives = 237/239 (99.16%), Query Frame = 0


Query: 70  FAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLK 129
           FAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLK
Sbjct: 18  FAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLK 77

Query: 130 KSPPQQTFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS 189
           KSPPQ+TFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS
Sbjct: 78  KSPPQRTFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS 137

Query: 190 PEATTNHCKEQGSVANNAHVQANELKEPDSTVEVVNKTKLQADQCVNSKNEAGKNRNPIR 249
           PEATTNHCKEQGSVANNAHVQANELKEPDSTVEVVNKTKLQ DQCVNSKNEAGKNRNPIR
Sbjct: 138 PEATTNHCKEQGSVANNAHVQANELKEPDSTVEVVNKTKLQPDQCVNSKNEAGKNRNPIR 197

Query: 250 SSARGSNAAAAKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRKNESLPTR 309
           SSARGSN+AAAKMKADKSSPKASCVDNEYL REHLGAAKRMFSQALGKQSRKNESLPTR
Sbjct: 198 SSARGSNSAAAKMKADKSSPKASCVDNEYLTREHLGAAKRMFSQALGKQSRKNESLPTR 256

[Close]

BLAST of Carg22657 vs. ExPASy TrEMBL
Match: A0A6J1HKF9 (uncharacterized protein LOC111465372 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465372 PE=4 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 4.7e-121
Identity = 228/239 (95.40%), Postives = 232/239 (97.07%), Query Frame = 0


Query: 70  FAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLK 129
           FAHVSVGEG DRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSL+
Sbjct: 69  FAHVSVGEGADRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLE 128

Query: 130 KSPPQQTFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS 189
           KSPPQ++FEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS
Sbjct: 129 KSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS 188

Query: 190 PEATTNHCKEQGSVANNAHVQANELKEPDSTVEVVNKTKLQADQCVNSKNEAGKNRNPIR 249
           PEATTNHCKEQGSVANNA+VQANELKEPDSTVEVVNKTKLQ DQCVNSKNE  KNRNP R
Sbjct: 189 PEATTNHCKEQGSVANNAYVQANELKEPDSTVEVVNKTKLQTDQCVNSKNEVSKNRNPSR 248

Query: 250 SSARGSNAAAAKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRKNESLPTR 309
           SSARGSNAAAAKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQ RKNESL TR
Sbjct: 249 SSARGSNAAAAKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQGRKNESLQTR 307

[Close]

BLAST of Carg22657 vs. ExPASy TrEMBL
Match: A0A6J1HP21 (uncharacterized protein LOC111465372 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111465372 PE=4 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 4.7e-121
Identity = 228/239 (95.40%), Postives = 232/239 (97.07%), Query Frame = 0


Query: 70  FAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLK 129
           FAHVSVGEG DRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSL+
Sbjct: 18  FAHVSVGEGADRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLE 77

Query: 130 KSPPQQTFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS 189
           KSPPQ++FEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS
Sbjct: 78  KSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS 137

Query: 190 PEATTNHCKEQGSVANNAHVQANELKEPDSTVEVVNKTKLQADQCVNSKNEAGKNRNPIR 249
           PEATTNHCKEQGSVANNA+VQANELKEPDSTVEVVNKTKLQ DQCVNSKNE  KNRNP R
Sbjct: 138 PEATTNHCKEQGSVANNAYVQANELKEPDSTVEVVNKTKLQTDQCVNSKNEVSKNRNPSR 197

Query: 250 SSARGSNAAAAKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRKNESLPTR 309
           SSARGSNAAAAKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQ RKNESL TR
Sbjct: 198 SSARGSNAAAAKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQGRKNESLQTR 256

[Close]

BLAST of Carg22657 vs. ExPASy TrEMBL
Match: A0A6J1D8H2 (uncharacterized protein LOC111018224 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018224 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 4.7e-89
Identity = 179/239 (74.90%), Postives = 199/239 (83.26%), Query Frame = 0


Query: 70  FAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLK 129
           FAHVSVGEGVDRHLVLERCPESS+PSILVSDILWE+DEPQ+STIPHQLL+RKENS VS+ 
Sbjct: 68  FAHVSVGEGVDRHLVLERCPESSIPSILVSDILWEFDEPQMSTIPHQLLKRKENSPVSVT 127

Query: 130 KSPPQQTFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS 189
           K+P Q + EER+ AYLAVR+RIFMMH GEDSEP KPKPRCDPVVARRMIAHALG+RINS 
Sbjct: 128 KAPCQPSLEERQTAYLAVRKRIFMMHTGEDSEPVKPKPRCDPVVARRMIAHALGQRINSF 187

Query: 190 PEATTNHCKEQ-GSVANNAHVQANELKEPDSTVEVVNKTKLQADQCVNSKNEAGKNRNPI 249
            E TT HCKEQ G+V NNAH+Q+N+ KEP+STV+ V KT  ++DQ VN KN   KN NPI
Sbjct: 188 SEDTTYHCKEQGGAVDNNAHIQSNDSKEPESTVKAVKKTISRSDQRVNLKNRGDKNCNPI 247

Query: 250 RSSARGSNAAAAKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRKNESLPT 308
            SSAR  N       ADK SPKASC+DN+YLKREHLGAAKRMFSQALGK  RKNES  T
Sbjct: 248 VSSARERN-------ADKISPKASCIDNDYLKREHLGAAKRMFSQALGKHCRKNESFQT 299

The following BLAST results are available for this feature:

BLAST of Carg22657 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020962.1	3.3e-169	100.00	hypothetical protein SDJN02_17650 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6586140.1	1.3e-125	98.74	TATA box-binding protein-associated factor RNA polymerase I subunit B, partial [...	[more]
XP_022937642.1	6.5e-125	98.33	uncharacterized protein LOC111443986 isoform X1 [Cucurbita moschata]	[more]
XP_022937643.1	6.5e-125	98.33	uncharacterized protein LOC111443986 isoform X2 [Cucurbita moschata]	[more]
XP_023538509.1	3.0e-122	96.65	uncharacterized protein LOC111799266 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg22657 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg22657 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FBT0	3.1e-125	98.33	uncharacterized protein LOC111443986 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1FGJ0	3.1e-125	98.33	uncharacterized protein LOC111443986 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HKF9	4.7e-121	95.40	uncharacterized protein LOC111465372 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HP21	4.7e-121	95.40	uncharacterized protein LOC111465372 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1D8H2	4.7e-89	74.90	uncharacterized protein LOC111018224 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Carg22657 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024771	SUZ domain	PFAM	PF12752	SUZ	coord: 119..153 e-value: 1.5E-8 score: 35.2
IPR024771	SUZ domain	PROSITE	PS51673	SUZ	coord: 92..156 score: 8.977552
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 236..253
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 236..277
None	No IPR available	PANTHER	PTHR15672:SF25	RNA-BINDING SUPPRESSOR OF PAS KINASE PROTEIN 1	coord: 70..304
None	No IPR available	PANTHER	PTHR15672	CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN	coord: 70..304

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22657-RA	Carg22657-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding