Carg22651 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22651
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Auxin efflux carrier component
Location	Carg_Chr12: 8957706 .. 8958857 (+)
RNA-Seq Expression	Carg22651
Synteny	Carg22651

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGGAGAAGGAGGGAAGGATGTGGAGGGAGGAGCCATGGAGGTTGAGGAAAGAAGAAGCAATAGCCACAAGCCTTCTTTCAAGCTTTTGATGAAGAAAGTTTGGCTAAAGTTGGTTGCAAATCCCAACTCTTATGCTTGTATCATTGGTTTGGCTTGGGCATTTGTTGCAAAAAGGTACATGCTTTTTTCAATAGGAAGCATATAAGTGATCGATATACCGTTCAAGATAAGTAGGTAACATAGTCATGTCGAATCGAGACCACATCCGAATGAAATTTGGTTTCGGAAAAGACTTAAAACAATGAACAGTTATTGTGAGATTTTACAGGAGAGGAGAACGAAACATTTCTTATAAGGGTGTGGAAATCACTCCCTAGTAGACGTGTTTTAAAAATCGTGAAGCTGACGACGGTACGTAACGGGACAAAGCGGACAATATCTATTAGCGGTGGGCTTGAGCTATTACAAATGGTATCAGAGCTAGACATCGGGTGATTGTGAGATCCCACGTCAATTGAAGAGGATAACGAAACATTCCTTATAATAGTGTGGAAACCTCTTCCTATTAGACGTGAACGATAACAAAACATGCTAAAAAAATTCATGTTGGTCTGTAGGAATAGTCTTCATTCTAACTCGTGTTAGTTTATGAGAATAGTTTCACTTCACGACAAGTAGGTAACATGGTCATATCATCCAAAATATTTTTAAATTTAGTGAATTGTGTTTGTTCGGAAATTTTTGCAGATGGCATATTGAAATGCCCGACATCATGGAAGGATCAATTCTAATCATGTCGAAAGCTGGGATTGGTACTGCCATGTTTAATATGGGTAAGATTACATGCGTGTTCGATTTAACTCAAATTAAGTTTAGGGAAACCACGAACCGAGCTAAACCCATTAATTTATTTTATGTATATAAAGTCAATCTAATCTAACACAACTCGAATAAGTTGATAACTCGACGATGGGACGTTTAAAGTGCAGGAATCTTCATGGCATTGCAAGAGAAGTTGATAGCTTGTGGAGTTACCCTTACCATAATAGGAATGGTTCTAAAGTTCATTGCTGGACCAGCTGCCATGGCCATTGGCTCCATTGCCATGGGCTTGCATGGTGACGTTCTACGTGTCGCTATCATACAG

mRNA sequence

ATGGTGGGAGAAGGAGGGAAGGATGTGGAGGGAGGAGCCATGGAGGTTGAGGAAAGAAGAAGCAATAGCCACAAGCCTTCTTTCAAGCTTTTGATGAAGAAAGTTTGGCTAAAGTTGGTTGCAAATCCCAACTCTTATGCTTGTATCATTGGTTTGGCTTGGGCATTTGTTGCAAAAAGTGCAGGAATCTTCATGGCATTGCAAGAGAAGTTGATAGCTTGTGGAGTTACCCTTACCATAATAGGAATGGTTCTAAAGTTCATTGCTGGACCAGCTGCCATGGCCATTGGCTCCATTGCCATGGGCTTGCATGGTGACGTTCTACGTGTCGCTATCATACAG

Coding sequence (CDS)

ATGGTGGGAGAAGGAGGGAAGGATGTGGAGGGAGGAGCCATGGAGGTTGAGGAAAGAAGAAGCAATAGCCACAAGCCTTCTTTCAAGCTTTTGATGAAGAAAGTTTGGCTAAAGTTGGTTGCAAATCCCAACTCTTATGCTTGTATCATTGGTTTGGCTTGGGCATTTGTTGCAAAAAGTGCAGGAATCTTCATGGCATTGCAAGAGAAGTTGATAGCTTGTGGAGTTACCCTTACCATAATAGGAATGGTTCTAAAGTTCATTGCTGGACCAGCTGCCATGGCCATTGGCTCCATTGCCATGGGCTTGCATGGTGACGTTCTACGTGTCGCTATCATACAG

Protein sequence

MVGEGGKDVEGGAMEVEERRSNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVAKSAGIFMALQEKLIACGVTLTIIGMVLKFIAGPAAMAIGSIAMGLHGDVLRVAIIQ

Homology

[Close]

BLAST of Carg22651 vs. NCBI nr
Match: KAG7020968.1 (Auxin efflux carrier component 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 217.2 bits (552), Expect = 7.1e-53
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MVGEGGKDVEGGAMEVEERRSNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVAKS 60
           MVGEGGKDVEGGAMEVEERRSNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVAKS
Sbjct: 1   MVGEGGKDVEGGAMEVEERRSNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVAKS 60

Query: 61  AGIFMALQEKLIACGVTLTIIGMVLKFIAGPAAMAIGSIAMGLHGDVLRVAIIQ 115
           AGIFMALQEKLIACGVTLTIIGMVLKFIAGPAAMAIGSIAMGLHGDVLRVAIIQ
Sbjct: 61  AGIFMALQEKLIACGVTLTIIGMVLKFIAGPAAMAIGSIAMGLHGDVLRVAIIQ 114

[Close]

BLAST of Carg22651 vs. NCBI nr
Match: XP_023536981.1 (auxin efflux carrier component 5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.0 bits (502), Expect = 4.5e-47
Identity = 111/141 (78.72%), Postives = 112/141 (79.43%), Query Frame = 0


Query: 1   MVGEGGKDVEGGAMEVEERRSNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVAK- 60
           MVGEGGKDVEGGAMEVEERRSNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVAK 
Sbjct: 181 MVGEGGKDVEGGAMEVEERRSNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVAKR 240

Query: 61  --------------------------SAGIFMALQEKLIACGVTLTIIGMVLKFIAGPAA 115
                                     + GIFMALQEKLIACG TLTIIGMVLKFIAGPAA
Sbjct: 241 WHIEMPDIMEGSILIMSKAGIGTAMFNMGIFMALQEKLIACGATLTIIGMVLKFIAGPAA 300

[Close]

BLAST of Carg22651 vs. NCBI nr
Match: XP_022937707.1 (auxin efflux carrier component 5 [Cucurbita moschata])

HSP 1 Score: 198.0 bits (502), Expect = 4.5e-47
Identity = 111/141 (78.72%), Postives = 112/141 (79.43%), Query Frame = 0


Query: 1   MVGEGGKDVEGGAMEVEERRSNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVAK- 60
           MVGEGGKDVEGGAMEVEERRSNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVAK 
Sbjct: 181 MVGEGGKDVEGGAMEVEERRSNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVAKR 240

Query: 61  --------------------------SAGIFMALQEKLIACGVTLTIIGMVLKFIAGPAA 115
                                     + GIFMALQEKLIACG TLTIIGMVLKFIAGPAA
Sbjct: 241 WHIEMPDIMEGSILIMSKAGIGTAMFNMGIFMALQEKLIACGATLTIIGMVLKFIAGPAA 300

[Close]

BLAST of Carg22651 vs. NCBI nr
Match: XP_022966048.1 (auxin efflux carrier component 5 [Cucurbita maxima])

HSP 1 Score: 198.0 bits (502), Expect = 4.5e-47
Identity = 111/141 (78.72%), Postives = 112/141 (79.43%), Query Frame = 0


Query: 1   MVGEGGKDVEGGAMEVEERRSNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVAK- 60
           MVGEGGKDVEGGAMEVEERRSNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVAK 
Sbjct: 181 MVGEGGKDVEGGAMEVEERRSNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVAKR 240

Query: 61  --------------------------SAGIFMALQEKLIACGVTLTIIGMVLKFIAGPAA 115
                                     + GIFMALQEKLIACG TLTIIGMVLKFIAGPAA
Sbjct: 241 WHIEMPDLMEGSILIMSKAGIGTAMFNMGIFMALQEKLIACGATLTIIGMVLKFIAGPAA 300

[Close]

BLAST of Carg22651 vs. NCBI nr
Match: KAG6586145.1 (Auxin efflux carrier component 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 198.0 bits (502), Expect = 4.5e-47
Identity = 111/141 (78.72%), Postives = 112/141 (79.43%), Query Frame = 0


Query: 1   MVGEGGKDVEGGAMEVEERRSNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVAK- 60
           MVGEGGKDVEGGAMEVEERRSNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVAK 
Sbjct: 181 MVGEGGKDVEGGAMEVEERRSNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVAKR 240

Query: 61  --------------------------SAGIFMALQEKLIACGVTLTIIGMVLKFIAGPAA 115
                                     + GIFMALQEKLIACG TLTIIGMVLKFIAGPAA
Sbjct: 241 WHIEMPDIMEGSILIMSKAGIGTAMFNMGIFMALQEKLIACGATLTIIGMVLKFIAGPAA 300

[Close]

BLAST of Carg22651 vs. ExPASy Swiss-Prot
Match: Q9FFD0 (Auxin efflux carrier component 5 OS=Arabidopsis thaliana OX=3702 GN=PIN5 PE=2 SV=2)

HSP 1 Score: 117.9 bits (294), Expect = 7.7e-26
Identity = 65/115 (56.52%), Postives = 76/115 (66.09%), Query Frame = 0


Query: 27  SFKLLMKKVWLKLVANPNSYACIIGLAWAFVAK--------------------------- 86
           SF  +M  VWLKL  NPN Y+CI+G+AWAF++                            
Sbjct: 188 SFLEVMSLVWLKLATNPNCYSCILGIAWAFISNRWHLELPGILEGSILIMSKAGTGTAMF 247

Query: 87  SAGIFMALQEKLIACGVTLTIIGMVLKFIAGPAAMAIGSIAMGLHGDVLRVAIIQ 115
           + GIFMALQEKLI CG +LT++GMVLKFIAGPAAMAIGSI +GLHGDVLRVAIIQ
Sbjct: 248 NMGIFMALQEKLIVCGTSLTVMGMVLKFIAGPAAMAIGSIVLGLHGDVLRVAIIQ 302

[Close]

BLAST of Carg22651 vs. ExPASy Swiss-Prot
Match: Q5JLM1 (Probable auxin efflux carrier component 5a OS=Oryza sativa subsp. japonica OX=39947 GN=PIN5A PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.0e-18
Identity = 63/140 (45.00%), Postives = 76/140 (54.29%), Query Frame = 0


Query: 6   GKDVE----GGAMEVEERRSNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVAK-- 65
           GKDVE      A       + + KPS   L+K V  KL  NPN+YA  +G+ WA +A   
Sbjct: 175 GKDVEAAGAAAAAGTVVVAAAAGKPSLWALVKVVAHKLARNPNTYASFVGITWACLANRL 234

Query: 66  -------------------------SAGIFMALQEKLIACGVTLTIIGMVLKFIAGPAAM 115
                                    S G+FMA QEK+IACG +   +G+VLKF  GPAAM
Sbjct: 235 HIALPSAFEGSVLIMSKSGTGMAMFSMGLFMAQQEKIIACGTSFAALGLVLKFALGPAAM 294

[Close]

BLAST of Carg22651 vs. ExPASy Swiss-Prot
Match: D5A7J3 (Probable auxin efflux carrier component 5b OS=Oryza sativa subsp. japonica OX=39947 GN=PIN5B PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.5e-18
Identity = 57/139 (41.01%), Postives = 78/139 (56.12%), Query Frame = 0


Query: 3   GEGGKDVEGGAMEVEERRSNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVAK--- 62
           G    DVE GA       + + + S   L++ VWLK+  NPN YA ++G+AWA V     
Sbjct: 183 GTDDDDVEDGA--AAAATAAAARRSLWPLVRAVWLKVARNPNVYAGVLGVAWACVTNRWH 242

Query: 63  ------------------------SAGIFMALQEKLIACGVTLTIIGMVLKFIAGPAAMA 115
                                   S G+FMALQ+K+I CG  LT++GM L+F+AGPAA A
Sbjct: 243 VETPSIIEGSVLIMSKTGVGLSMFSMGLFMALQDKIIVCGAGLTVLGMALRFVAGPAATA 302

[Close]

BLAST of Carg22651 vs. ExPASy Swiss-Prot
Match: Q8RWZ6 (Auxin efflux carrier component 4 OS=Arabidopsis thaliana OX=3702 GN=PIN4 PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.5e-16
Identity = 57/160 (35.62%), Postives = 80/160 (50.00%), Query Frame = 0


Query: 3   GEGGKDVEGGAMEVEERRSNS-----------------HKP----SFKLLMKKVWLKLVA 62
           GEG +++E     + +  SNS                 H P      +L++  VW KL+ 
Sbjct: 410 GEGEREIEKATAGLNKMGSNSTAELEAAGGDGGGNNGTHMPPTSVMTRLILIMVWRKLIR 469

Query: 63  NPNSYACIIGLAWAFVAK---------------------------SAGIFMALQEKLIAC 115
           NPN+Y+ +IGL WA VA                            S G+FMALQ K+IAC
Sbjct: 470 NPNTYSSLIGLIWALVAYRWHVAMPKILQQSISILSDAGLGMAMFSLGLFMALQPKIIAC 529

[Close]

BLAST of Carg22651 vs. ExPASy Swiss-Prot
Match: Q9S7Z8 (Auxin efflux carrier component 3 OS=Arabidopsis thaliana OX=3702 GN=PIN3 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.3e-16
Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = 0


Query: 11  GGAMEVEERRSNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVA------------ 70
           GGA   + +         +L++  VW KL+ NPN+Y+ +IGL WA VA            
Sbjct: 463 GGAEASQRKNMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWALVAFRWHVAMPKIIQ 522

Query: 71  ---------------KSAGIFMALQEKLIACGVTLTIIGMVLKFIAGPAAMAIGSIAMGL 115
                           S G+FMALQ KLIACG ++    M ++F+ GPA MA+ +IA+GL
Sbjct: 523 QSISILSDAGLGMAMFSLGLFMALQPKLIACGNSVATFAMAVRFLTGPAVMAVAAIAIGL 582

[Close]

BLAST of Carg22651 vs. ExPASy TrEMBL
Match: A0A6J1HQQ5 (Auxin efflux carrier component OS=Cucurbita maxima OX=3661 GN=LOC111465776 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.2e-47
Identity = 111/141 (78.72%), Postives = 112/141 (79.43%), Query Frame = 0


Query: 1   MVGEGGKDVEGGAMEVEERRSNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVAK- 60
           MVGEGGKDVEGGAMEVEERRSNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVAK 
Sbjct: 181 MVGEGGKDVEGGAMEVEERRSNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVAKR 240

Query: 61  --------------------------SAGIFMALQEKLIACGVTLTIIGMVLKFIAGPAA 115
                                     + GIFMALQEKLIACG TLTIIGMVLKFIAGPAA
Sbjct: 241 WHIEMPDLMEGSILIMSKAGIGTAMFNMGIFMALQEKLIACGATLTIIGMVLKFIAGPAA 300

[Close]

BLAST of Carg22651 vs. ExPASy TrEMBL
Match: A0A6J1FBZ5 (Auxin efflux carrier component OS=Cucurbita moschata OX=3662 GN=LOC111444027 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.2e-47
Identity = 111/141 (78.72%), Postives = 112/141 (79.43%), Query Frame = 0


Query: 1   MVGEGGKDVEGGAMEVEERRSNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVAK- 60
           MVGEGGKDVEGGAMEVEERRSNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVAK 
Sbjct: 181 MVGEGGKDVEGGAMEVEERRSNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVAKR 240

Query: 61  --------------------------SAGIFMALQEKLIACGVTLTIIGMVLKFIAGPAA 115
                                     + GIFMALQEKLIACG TLTIIGMVLKFIAGPAA
Sbjct: 241 WHIEMPDIMEGSILIMSKAGIGTAMFNMGIFMALQEKLIACGATLTIIGMVLKFIAGPAA 300

[Close]

BLAST of Carg22651 vs. ExPASy TrEMBL
Match: A0A6J1D820 (Auxin efflux carrier component OS=Momordica charantia OX=3673 GN=LOC111018220 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 4.5e-37
Identity = 97/142 (68.31%), Postives = 103/142 (72.54%), Query Frame = 0


Query: 1   MVGEGGKDVEGGAMEVEERR-SNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVAK 60
           MV EG K++EG AMEVE R  SNSH+ SFK LMKKVWLKL ANPNSYACIIG AWAFVAK
Sbjct: 181 MVEEGRKNLEGEAMEVEGRETSNSHRASFKPLMKKVWLKLAANPNSYACIIGFAWAFVAK 240

Query: 61  ---------------------------SAGIFMALQEKLIACGVTLTIIGMVLKFIAGPA 115
                                      + GIFMALQEKLIACG +LTIIGMVLKFIAGPA
Sbjct: 241 RWHIEMPSIMEGSILIMSKAGIGTAMFNMGIFMALQEKLIACGASLTIIGMVLKFIAGPA 300

[Close]

BLAST of Carg22651 vs. ExPASy TrEMBL
Match: A0A0A0LH23 (Auxin efflux carrier component OS=Cucumis sativus OX=3659 GN=Csa_2G074170 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 6.5e-36
Identity = 93/141 (65.96%), Postives = 99/141 (70.21%), Query Frame = 0


Query: 3   GEGGKDVEGGAMEVEE--RRSNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVAK- 62
           GEG KD+EG  MEVEE  R S SH+PS K LMKKVW+K+  NPNSYAC IG AWAFVAK 
Sbjct: 179 GEGEKDLEGEGMEVEEMRRSSKSHRPSLKPLMKKVWVKMAGNPNSYACTIGFAWAFVAKR 238

Query: 63  --------------------------SAGIFMALQEKLIACGVTLTIIGMVLKFIAGPAA 115
                                     + GIFMALQEKLIACG TLTI+GMVLKFIAGPAA
Sbjct: 239 WHVEMPSIMEGSILIMSKAGIGTAMFNMGIFMALQEKLIACGPTLTIVGMVLKFIAGPAA 298

[Close]

BLAST of Carg22651 vs. ExPASy TrEMBL
Match: A0A2C9VF50 (Auxin efflux carrier component OS=Manihot esculenta OX=3983 GN=MANES_08G104400 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.6e-29
Identity = 81/135 (60.00%), Postives = 91/135 (67.41%), Query Frame = 0


Query: 7   KDVEGGAMEVEERRSNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVAK------- 66
           KD+EG +  V + +  S KPSF  LMK VWLK+  NPNSYACIIGL WAF+AK       
Sbjct: 172 KDLEGISRSV-DHKMESAKPSFWALMKVVWLKMAMNPNSYACIIGLVWAFIAKRWHFEMP 231

Query: 67  --------------------SAGIFMALQEKLIACGVTLTIIGMVLKFIAGPAAMAIGSI 115
                               S GIFMALQEKLIACG  LT++GMVL+FIAGPAAMAIGSI
Sbjct: 232 SIMEGSILIMSRAGTGTAMFSMGIFMALQEKLIACGTGLTVVGMVLRFIAGPAAMAIGSI 291

[Close]

BLAST of Carg22651 vs. TAIR 10
Match: AT5G16530.1 (Auxin efflux carrier family protein )

HSP 1 Score: 117.9 bits (294), Expect = 5.5e-27
Identity = 65/115 (56.52%), Postives = 76/115 (66.09%), Query Frame = 0


Query: 27  SFKLLMKKVWLKLVANPNSYACIIGLAWAFVAK--------------------------- 86
           SF  +M  VWLKL  NPN Y+CI+G+AWAF++                            
Sbjct: 188 SFLEVMSLVWLKLATNPNCYSCILGIAWAFISNRWHLELPGILEGSILIMSKAGTGTAMF 247

Query: 87  SAGIFMALQEKLIACGVTLTIIGMVLKFIAGPAAMAIGSIAMGLHGDVLRVAIIQ 115
           + GIFMALQEKLI CG +LT++GMVLKFIAGPAAMAIGSI +GLHGDVLRVAIIQ
Sbjct: 248 NMGIFMALQEKLIVCGTSLTVMGMVLKFIAGPAAMAIGSIVLGLHGDVLRVAIIQ 302

[Close]

BLAST of Carg22651 vs. TAIR 10
Match: AT2G01420.1 (Auxin efflux carrier family protein )

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-17
Identity = 57/160 (35.62%), Postives = 80/160 (50.00%), Query Frame = 0


Query: 3   GEGGKDVEGGAMEVEERRSNS-----------------HKP----SFKLLMKKVWLKLVA 62
           GEG +++E     + +  SNS                 H P      +L++  VW KL+ 
Sbjct: 406 GEGEREIEKATAGLNKMGSNSTAELEAAGGDGGGNNGTHMPPTSVMTRLILIMVWRKLIR 465

Query: 63  NPNSYACIIGLAWAFVAK---------------------------SAGIFMALQEKLIAC 115
           NPN+Y+ +IGL WA VA                            S G+FMALQ K+IAC
Sbjct: 466 NPNTYSSLIGLIWALVAYRWHVAMPKILQQSISILSDAGLGMAMFSLGLFMALQPKIIAC 525

[Close]

BLAST of Carg22651 vs. TAIR 10
Match: AT2G01420.2 (Auxin efflux carrier family protein )

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-17
Identity = 57/160 (35.62%), Postives = 80/160 (50.00%), Query Frame = 0


Query: 3   GEGGKDVEGGAMEVEERRSNS-----------------HKP----SFKLLMKKVWLKLVA 62
           GEG +++E     + +  SNS                 H P      +L++  VW KL+ 
Sbjct: 410 GEGEREIEKATAGLNKMGSNSTAELEAAGGDGGGNNGTHMPPTSVMTRLILIMVWRKLIR 469

Query: 63  NPNSYACIIGLAWAFVAK---------------------------SAGIFMALQEKLIAC 115
           NPN+Y+ +IGL WA VA                            S G+FMALQ K+IAC
Sbjct: 470 NPNTYSSLIGLIWALVAYRWHVAMPKILQQSISILSDAGLGMAMFSLGLFMALQPKIIAC 529

[Close]

BLAST of Carg22651 vs. TAIR 10
Match: AT1G70940.1 (Auxin efflux carrier family protein )

HSP 1 Score: 85.9 bits (211), Expect = 2.3e-17
Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = 0


Query: 11  GGAMEVEERRSNSHKPSFKLLMKKVWLKLVANPNSYACIIGLAWAFVA------------ 70
           GGA   + +         +L++  VW KL+ NPN+Y+ +IGL WA VA            
Sbjct: 463 GGAEASQRKNMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWALVAFRWHVAMPKIIQ 522

Query: 71  ---------------KSAGIFMALQEKLIACGVTLTIIGMVLKFIAGPAAMAIGSIAMGL 115
                           S G+FMALQ KLIACG ++    M ++F+ GPA MA+ +IA+GL
Sbjct: 523 QSISILSDAGLGMAMFSLGLFMALQPKLIACGNSVATFAMAVRFLTGPAVMAVAAIAIGL 582

[Close]

BLAST of Carg22651 vs. TAIR 10
Match: AT1G23080.1 (Auxin efflux carrier family protein )

HSP 1 Score: 82.8 bits (203), Expect = 2.0e-16
Identity = 52/133 (39.10%), Postives = 70/133 (52.63%), Query Frame = 0


Query: 13  AMEVEERRSNSHKP----SFKLLMKKVWLKLVANPNSYACIIGLAWAFVA---------- 72
           A+E  E     H P      +L++  VW KL+ NPN+Y+ +IGL WA VA          
Sbjct: 440 AIETGETVPVKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWALVAFRWDVAMPKI 499

Query: 73  -----------------KSAGIFMALQEKLIACGVTLTIIGMVLKFIAGPAAMAIGSIAM 115
                             S G+FMALQ KLIACG +     M ++F  GPA MA+ ++A+
Sbjct: 500 IQQSISILSDAGLGMAMFSLGLFMALQPKLIACGNSTATFAMAVRFFTGPAVMAVAAMAI 559

The following BLAST results are available for this feature:

BLAST of Carg22651 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020968.1	7.1e-53	100.00	Auxin efflux carrier component 5, partial [Cucurbita argyrosperma subsp. argyros...	[more]
XP_023536981.1	4.5e-47	78.72	auxin efflux carrier component 5 [Cucurbita pepo subsp. pepo]	[more]
XP_022937707.1	4.5e-47	78.72	auxin efflux carrier component 5 [Cucurbita moschata]	[more]
XP_022966048.1	4.5e-47	78.72	auxin efflux carrier component 5 [Cucurbita maxima]	[more]
KAG6586145.1	4.5e-47	78.72	Auxin efflux carrier component 5, partial [Cucurbita argyrosperma subsp. sororia...	[more]

BLAST of Carg22651 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FFD0	7.7e-26	56.52	Auxin efflux carrier component 5 OS=Arabidopsis thaliana OX=3702 GN=PIN5 PE=2 SV...	[more]
Q5JLM1	2.0e-18	45.00	Probable auxin efflux carrier component 5a OS=Oryza sativa subsp. japonica OX=39...	[more]
D5A7J3	3.5e-18	41.01	Probable auxin efflux carrier component 5b OS=Oryza sativa subsp. japonica OX=39...	[more]
Q8RWZ6	2.5e-16	35.63	Auxin efflux carrier component 4 OS=Arabidopsis thaliana OX=3702 GN=PIN4 PE=1 SV...	[more]
Q9S7Z8	3.3e-16	38.93	Auxin efflux carrier component 3 OS=Arabidopsis thaliana OX=3702 GN=PIN3 PE=1 SV...	[more]

BLAST of Carg22651 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HQQ5	2.2e-47	78.72	Auxin efflux carrier component OS=Cucurbita maxima OX=3661 GN=LOC111465776 PE=3 ...	[more]
A0A6J1FBZ5	2.2e-47	78.72	Auxin efflux carrier component OS=Cucurbita moschata OX=3662 GN=LOC111444027 PE=...	[more]
A0A6J1D820	4.5e-37	68.31	Auxin efflux carrier component OS=Momordica charantia OX=3673 GN=LOC111018220 PE...	[more]
A0A0A0LH23	6.5e-36	65.96	Auxin efflux carrier component OS=Cucumis sativus OX=3659 GN=Csa_2G074170 PE=3 S...	[more]
A0A2C9VF50	1.6e-29	60.00	Auxin efflux carrier component OS=Manihot esculenta OX=3983 GN=MANES_08G104400 P...	[more]

BLAST of Carg22651 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16530.1	5.5e-27	56.52	Auxin efflux carrier family protein	[more]
AT2G01420.1	1.8e-17	35.63	Auxin efflux carrier family protein	[more]
AT2G01420.2	1.8e-17	35.63	Auxin efflux carrier family protein	[more]
AT1G70940.1	2.3e-17	38.93	Auxin efflux carrier family protein	[more]
AT1G23080.1	2.0e-16	39.10	Auxin efflux carrier family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004776	Membrane transport protein	PFAM	PF03547	Mem_trans	coord: 60..114 e-value: 1.2E-10 score: 40.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..24
None	No IPR available	PANTHER	PTHR31752:SF57	AUXIN EFFLUX CARRIER COMPONENT	coord: 60..114
None	No IPR available	PANTHER	PTHR31752	AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED	coord: 15..59 coord: 60..114
None	No IPR available	PANTHER	PTHR31752:SF57	AUXIN EFFLUX CARRIER COMPONENT	coord: 15..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22651-RA	Carg22651-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0060918	auxin transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane