Carg22624 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg22624
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionoil body-associated protein 1A-like
LocationCarg_Chr17: 4963129 .. 4963248 (-)
RNA-Seq ExpressionCarg22624
SyntenyCarg22624
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGAGGCAGCTGGAGGCTCACCACTTCTGCGCCCACCTGAACGAGGAGGTCCGACAGTGTCTGATCTACGACAGCCCCGAGAAGGACGCTAGGCTGATCGGTGAGAATATTTGCTAA

mRNA sequence

ATGACGAGGCAGCTGGAGGCTCACCACTTCTGCGCCCACCTGAACGAGGAGGTCCGACAGTGTCTGATCTACGACAGCCCCGAGAAGGACGCTAGGCTGATCGGTGAGAATATTTGCTAA

Coding sequence (CDS)

ATGACGAGGCAGCTGGAGGCTCACCACTTCTGCGCCCACCTGAACGAGGAGGTCCGACAGTGTCTGATCTACGACAGCCCCGAGAAGGACGCTAGGCTGATCGGTGAGAATATTTGCTAA

Protein sequence

MTRQLEAHHFCAHLNEEVRQCLIYDSPEKDARLIGENIC
Homology
BLAST of Carg22624 vs. NCBI nr
Match: KAG7013873.1 (Oil body-associated protein 1A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 88.2 bits (217), Expect = 1.7e-14
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0

Query: 1  MTRQLEAHHFCAHLNEEVRQCLIYDSPEKDARLIGENIC 40
          MTRQLEAHHFCAHLNEEVRQCLIYDSPEKDARLIGENIC
Sbjct: 1  MTRQLEAHHFCAHLNEEVRQCLIYDSPEKDARLIGENIC 39

BLAST of Carg22624 vs. NCBI nr
Match: XP_022929874.1 (oil body-associated protein 1A-like [Cucurbita moschata])

HSP 1 Score: 79.0 bits (193), Expect = 1.0e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0

Query: 1  MTRQLEAHHFCAHLNEEVRQCLIYDSPEKDARLIG 36
          MTRQLEAHHFCAHLNEEVRQCLIYDSPEKDARLIG
Sbjct: 49 MTRQLEAHHFCAHLNEEVRQCLIYDSPEKDARLIG 83

BLAST of Carg22624 vs. NCBI nr
Match: XP_022992382.1 (oil body-associated protein 1A-like [Cucurbita maxima])

HSP 1 Score: 77.8 bits (190), Expect = 2.3e-11
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0

Query: 1  MTRQLEAHHFCAHLNEEVRQCLIYDSPEKDARLIG 36
          MTRQLEAHHFCAHLN+EVRQCLIYDSPEKDARLIG
Sbjct: 49 MTRQLEAHHFCAHLNDEVRQCLIYDSPEKDARLIG 83

BLAST of Carg22624 vs. NCBI nr
Match: KAA0050567.1 (oil body-associated protein 1A-like [Cucumis melo var. makuwa] >TYK18806.1 oil body-associated protein 1A-like [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 3.0e-11
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0

Query: 1  MTRQLEAHHFCAHLNEEVRQCLIYDSPEKDARLIG 36
          MTRQLEAHHFCAHLNEEVRQCLI+DSPEKDARLIG
Sbjct: 49 MTRQLEAHHFCAHLNEEVRQCLIFDSPEKDARLIG 83

BLAST of Carg22624 vs. NCBI nr
Match: XP_008462003.1 (PREDICTED: oil body-associated protein 1A-like [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 3.0e-11
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0

Query: 1  MTRQLEAHHFCAHLNEEVRQCLIYDSPEKDARLIG 36
          MTRQLEAHHFCAHLNEEVRQCLI+DSPEKDARLIG
Sbjct: 49 MTRQLEAHHFCAHLNEEVRQCLIFDSPEKDARLIG 83

BLAST of Carg22624 vs. ExPASy Swiss-Prot
Match: Q9ZVY7 (Oil body-associated protein 1A OS=Arabidopsis thaliana OX=3702 GN=OBAP1A PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 9.1e-11
Identity = 26/35 (74.29%), Postives = 32/35 (91.43%), Query Frame = 0

Query: 1  MTRQLEAHHFCAHLNEEVRQCLIYDSPEKDARLIG 36
          MTRQ+EAHHFC H+NE++RQCLIYD P+ +ARLIG
Sbjct: 57 MTRQVEAHHFCGHINEDMRQCLIYDGPDANARLIG 91

BLAST of Carg22624 vs. ExPASy Swiss-Prot
Match: Q8GWR2 (Oil body-associated protein 1B OS=Arabidopsis thaliana OX=3702 GN=OBAP1B PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.6e-10
Identity = 26/35 (74.29%), Postives = 32/35 (91.43%), Query Frame = 0

Query: 1  MTRQLEAHHFCAHLNEEVRQCLIYDSPEKDARLIG 36
          M RQ+EAHHFC+H+NEE+RQCLIYD P+ +ARLIG
Sbjct: 57 MARQVEAHHFCSHVNEEMRQCLIYDGPDANARLIG 91

BLAST of Carg22624 vs. ExPASy Swiss-Prot
Match: B4FFZ9 (Oil body-associated protein 1A OS=Zea mays OX=4577 GN=OBAP1A PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 7.7e-10
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 1  MTRQLEAHHFCAHLNEEVRQCLIYDSPEKDARLIG 36
          M RQ+EAHHFCAHLNE+VRQCLI+D P   ARLIG
Sbjct: 52 MGRQVEAHHFCAHLNEDVRQCLIFDGPGAGARLIG 86

BLAST of Carg22624 vs. ExPASy Swiss-Prot
Match: B6UI56 (Oil body-associated protein 2B OS=Zea mays OX=4577 GN=OBAP2B PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.0e-05
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 0

Query: 3  RQLEAHHFCAHLNEEVRQCLIYDSPEKDARLIG 36
          RQ+E HHF A LN++V QC +YDS +  ARLIG
Sbjct: 66 RQVEVHHFVARLNQDVLQCAVYDSDKPSARLIG 98

BLAST of Carg22624 vs. ExPASy Swiss-Prot
Match: B4FFK9 (Oil body-associated protein 2A OS=Zea mays OX=4577 GN=OBAP2A PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 7.5e-05
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 0

Query: 3   RQLEAHHFCAHLNEEVRQCLIYDSPEKDARLIG 36
           RQ+E HH+ + LN++  QC +YDS + DARLIG
Sbjct: 69  RQVETHHYVSRLNQDFLQCAVYDSDKADARLIG 101

BLAST of Carg22624 vs. ExPASy TrEMBL
Match: A0A6J1EQ17 (oil body-associated protein 1A-like OS=Cucurbita moschata OX=3662 GN=LOC111436352 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.0e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0

Query: 1  MTRQLEAHHFCAHLNEEVRQCLIYDSPEKDARLIG 36
          MTRQLEAHHFCAHLNEEVRQCLIYDSPEKDARLIG
Sbjct: 49 MTRQLEAHHFCAHLNEEVRQCLIYDSPEKDARLIG 83

BLAST of Carg22624 vs. ExPASy TrEMBL
Match: A0A6J1JPN4 (oil body-associated protein 1A-like OS=Cucurbita maxima OX=3661 GN=LOC111488706 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0

Query: 1  MTRQLEAHHFCAHLNEEVRQCLIYDSPEKDARLIG 36
          MTRQLEAHHFCAHLN+EVRQCLIYDSPEKDARLIG
Sbjct: 49 MTRQLEAHHFCAHLNDEVRQCLIYDSPEKDARLIG 83

BLAST of Carg22624 vs. ExPASy TrEMBL
Match: A0A5D3D5L2 (Oil body-associated protein 1A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00240 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-11
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0

Query: 1  MTRQLEAHHFCAHLNEEVRQCLIYDSPEKDARLIG 36
          MTRQLEAHHFCAHLNEEVRQCLI+DSPEKDARLIG
Sbjct: 49 MTRQLEAHHFCAHLNEEVRQCLIFDSPEKDARLIG 83

BLAST of Carg22624 vs. ExPASy TrEMBL
Match: A0A1S3CGF6 (oil body-associated protein 1A-like OS=Cucumis melo OX=3656 GN=LOC103500478 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-11
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0

Query: 1  MTRQLEAHHFCAHLNEEVRQCLIYDSPEKDARLIG 36
          MTRQLEAHHFCAHLNEEVRQCLI+DSPEKDARLIG
Sbjct: 49 MTRQLEAHHFCAHLNEEVRQCLIFDSPEKDARLIG 83

BLAST of Carg22624 vs. ExPASy TrEMBL
Match: A0A0A0K538 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336470 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-11
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 0

Query: 1  MTRQLEAHHFCAHLNEEVRQCLIYDSPEKDARLIG 36
          MTRQLEAHH+CAHLNEEVRQCLI+DSPEKDARLIG
Sbjct: 1  MTRQLEAHHYCAHLNEEVRQCLIFDSPEKDARLIG 35

BLAST of Carg22624 vs. TAIR 10
Match: AT1G05510.1 (Protein of unknown function (DUF1264) )

HSP 1 Score: 66.2 bits (160), Expect = 6.5e-12
Identity = 26/35 (74.29%), Postives = 32/35 (91.43%), Query Frame = 0

Query: 1  MTRQLEAHHFCAHLNEEVRQCLIYDSPEKDARLIG 36
          MTRQ+EAHHFC H+NE++RQCLIYD P+ +ARLIG
Sbjct: 57 MTRQVEAHHFCGHINEDMRQCLIYDGPDANARLIG 91

BLAST of Carg22624 vs. TAIR 10
Match: AT2G31985.1 (Protein of unknown function (DUF1264) )

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-11
Identity = 26/35 (74.29%), Postives = 32/35 (91.43%), Query Frame = 0

Query: 1  MTRQLEAHHFCAHLNEEVRQCLIYDSPEKDARLIG 36
          M RQ+EAHHFC+H+NEE+RQCLIYD P+ +ARLIG
Sbjct: 57 MARQVEAHHFCSHVNEEMRQCLIYDGPDANARLIG 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7013873.11.7e-14100.00Oil body-associated protein 1A, partial [Cucurbita argyrosperma subsp. argyrospe... [more]
XP_022929874.11.0e-11100.00oil body-associated protein 1A-like [Cucurbita moschata][more]
XP_022992382.12.3e-1197.14oil body-associated protein 1A-like [Cucurbita maxima][more]
KAA0050567.13.0e-1197.14oil body-associated protein 1A-like [Cucumis melo var. makuwa] >TYK18806.1 oil b... [more]
XP_008462003.13.0e-1197.14PREDICTED: oil body-associated protein 1A-like [Cucumis melo][more]
Match NameE-valueIdentityDescription
Q9ZVY79.1e-1174.29Oil body-associated protein 1A OS=Arabidopsis thaliana OX=3702 GN=OBAP1A PE=1 SV... [more]
Q8GWR21.6e-1074.29Oil body-associated protein 1B OS=Arabidopsis thaliana OX=3702 GN=OBAP1B PE=1 SV... [more]
B4FFZ97.7e-1077.14Oil body-associated protein 1A OS=Zea mays OX=4577 GN=OBAP1A PE=2 SV=1[more]
B6UI562.0e-0560.61Oil body-associated protein 2B OS=Zea mays OX=4577 GN=OBAP2B PE=2 SV=1[more]
B4FFK97.5e-0554.55Oil body-associated protein 2A OS=Zea mays OX=4577 GN=OBAP2A PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1EQ175.0e-12100.00oil body-associated protein 1A-like OS=Cucurbita moschata OX=3662 GN=LOC11143635... [more]
A0A6J1JPN41.1e-1197.14oil body-associated protein 1A-like OS=Cucurbita maxima OX=3661 GN=LOC111488706 ... [more]
A0A5D3D5L21.5e-1197.14Oil body-associated protein 1A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A1S3CGF61.5e-1197.14oil body-associated protein 1A-like OS=Cucumis melo OX=3656 GN=LOC103500478 PE=3... [more]
A0A0A0K5383.3e-1194.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336470 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT1G05510.16.5e-1274.29Protein of unknown function (DUF1264) [more]
AT2G31985.11.1e-1174.29Protein of unknown function (DUF1264) [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010686Oil body-associated protein-likePFAMPF06884DUF1264coord: 1..35
e-value: 5.9E-14
score: 52.0
IPR010686Oil body-associated protein-likePANTHERPTHR31360FAMILY NOT NAMEDcoord: 1..36
NoneNo IPR availablePANTHERPTHR31360:SF15OIL BODY-ASSOCIATED PROTEIN 1A-LIKEcoord: 1..36

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22624-RACarg22624-RAmRNA