Carg22598 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22598
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr17: 5217610 .. 5218706 (-)
RNA-Seq Expression	Carg22598
Synteny	Carg22598

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAAGGGAAATCATCTGTCCCGCTTGTCTGGACCTGTTTCTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCTCCTTCTTCGTCGGACGCGTCTTCGCTGTGTTAGGTCTTTTCCTATTTTAAACAGCATACCAAATTCCTCCCACTCTGTCTCAATTCCATTATACCCTTTCTCCATTTCCCTGTAAATTCCCCCAATTCAATAATCTGTCACCCAACTCCATTTCTCACTCTCGATTCCCACACATCGTCGCCCCATTAACCCCAGGGTTTTAATTTCATCCCCCCAACTCCTCGATCGCTAGGGTTTCGATTGAAATCACCTCTCCTCTGGGCGATTTTACATTGTTTCTTCTATTACTTGTGCTCGATTTCGCTAATTACGTTCATCTGGGGCGTTTGAATTTCGTCCCAGCACTTATCGCGAGCCTCTGGAACTGCTGAATTTGATAAGGGGATGCCCTTGGGGTTCTTGGCTTGACAGTCTTCTTTTTAACAGCTTATTTGATTAAAGAGGTAAGGGTTTTGGATTTTCTTTTACAATTGTATGGGTGTAGCTTTGAATTTGTTGTTGTGCTTGATGACGTTTGCAGTTAATTTAATTTATTTTATTTTATTTTTTTCTTTTTACCCTTACCTATGTTTTCTAATTATGTAAATGGTCAACGTGTAAAGGTTTGGGATTCAAGCCTGCACTGGTTGCCCATATAAGGCGATGTTAGGTCTGAATTGCAACCCCTTCGCTACTACCAGCTGTTTCTTTCATCGGGCCGAATGGCATCCGTTGGAATAGCATACCGGACACGGGCTTGCTGGCCCTTCTTCCCTTTGTAAATCAGGTACAGTTCATATCTCAAAGCTGGAATAATGCGCTTCCAAAAGTTTTTGTTTTTTCTTTATCCCATTTCAGTAGTTCAATAATTCTGAACAGCTTTTAATTCATATAGTTTCGGTGCATGATAAACTCTCCTTCATTTCGTGAGTCGTCTATGGATTATAATCTACTGAATTCGATGCCATTTTTCTCTTTTCTCTTTGCAGGATAGGGTTGTTTGGTTGCTGATAATTTCAATAACTACTTAA

mRNA sequence

ATGGAGGAAGGGAAATCATCTGTCCCGCTTGTCTGGACCTGTTTCTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCTCCTTCTTCGTCGGACGCGTCTTCGCTGTGGGATGCCCTTGGGGTTCTTGGCTTGACAGTCTTCTTTTTAACAGCTTATTTGATTAAAGAGGATAGGGTTGTTTGGTTGCTGATAATTTCAATAACTACTTAA

Coding sequence (CDS)

ATGGAGGAAGGGAAATCATCTGTCCCGCTTGTCTGGACCTGTTTCTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCTCCTTCTTCGTCGGACGCGTCTTCGCTGTGGGATGCCCTTGGGGTTCTTGGCTTGACAGTCTTCTTTTTAACAGCTTATTTGATTAAAGAGGATAGGGTTGTTTGGTTGCTGATAATTTCAATAACTACTTAA

Protein sequence

MEEGKSSVPLVWTCFSSSSSSSSSSSSSSPSSSDASSLWDALGVLGLTVFFLTAYLIKEDRVVWLLIISITT

Homology

[Close]

BLAST of Carg22598 vs. NCBI nr
Match: KAG7013899.1 (hypothetical protein SDJN02_24068, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123.6 bits (309), Expect = 6.8e-25
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MEEGKSSVPLVWTCFSSSSSSSSSSSSSSPSSSDASSLWDALGVLGLTVFFLTAYLIKED 60
          MEEGKSSVPLVWTCFSSSSSSSSSSSSSSPSSSDASSLWDALGVLGLTVFFLTAYLIKED
Sbjct: 1  MEEGKSSVPLVWTCFSSSSSSSSSSSSSSPSSSDASSLWDALGVLGLTVFFLTAYLIKED 60

Query: 61 RVVWLLIISITT 73
          RVVWLLIISITT
Sbjct: 61 RVVWLLIISITT 72

[Close]

BLAST of Carg22598 vs. NCBI nr
Match: KAG6605543.1 (hypothetical protein SDJN03_02860, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105.9 bits (263), Expect = 1.5e-19
Identity = 72/96 (75.00%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 1  MEEGKSSVPLVWTCF-SSSSSSSSSSSSSSPSSSDASSLWDALGVLGLTVFFLTAYLIKE 60
          MEEGKSSVPLVWTCF SSSSSSSSSSSSSSPSSSDASSLWDALGVLGLTVFFLTAYLIKE
Sbjct: 1  MEEGKSSVPLVWTCFSSSSSSSSSSSSSSSPSSSDASSLWDALGVLGLTVFFLTAYLIKE 60

Query: 61 -----------------------DRVVWLLIISITT 73
                                 DRVVWLLIISITT
Sbjct: 61 VWDSSLHCIPDTGLLALLPFVNQDRVVWLLIISITT 96

The following BLAST results are available for this feature:

BLAST of Carg22598 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013899.1	6.8e-25	100.00	hypothetical protein SDJN02_24068, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6605543.1	1.5e-19	75.00	hypothetical protein SDJN03_02860, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Carg22598 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg22598 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg22598 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22598-RA	Carg22598-RA	mRNA