Carg22568 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg22568
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr18: 3104980 .. 3110239 (-)
RNA-Seq ExpressionCarg22568
SyntenyCarg22568
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACAGGCACGGGAGGGCCAATGCCTGGATAGAACCCGGATGGGTGGATGTTTAGGAAGTCTCTATGAGATGAGCGACACGCGGGCCCGTTCTCGATGGCATAACCAGGTGATTTGTGATGGCCGGTGACACCCCAAGACTCGGGATGGCGTTAAGACATATGAGTCATGTCATTGGAGATCGAGATGACTAGAGGAGACGCAATGCTGCATTGAGAGACCTTGGCTTCGAGTAAAGGCAAGGTCGAGCTGAATGACTTGATCGAACAAGGTTGGATTCCGCACAAGTGATGTTCAATTGGCAAAGACAAACCTCGCCTAAGATCCAACGAAGCCACAAAGTCGGAGCGAAAAATATATATGGGGCTTAATTCCTCTTGGTCATGAGTGTGTCAAGATCACGACACCGCCCGGTAAAAAATGTAGGACCGTTTCTTTCTTCAATCTGATTTTACAATCCACCTCTTAGACCTAGGTCAACGAAATAATTAGACTACAAGGGGGTTGATCTTTGCAGTCATTTTGTTTTAGTTGGTATTATCAAGATGATAATTATGAGGTTGAATTGGATTTTGGGGAGCTGATTCAGGATGGTACAAAGAATAATTAGTAACTACGGTCTAGGTCACCCAAGTAAGTGGATCATTTGGTTGGAAGAATTGTCTTAGGTATGATGACACGTGTCCAGTGACCCCTCAACATGTCATATGTATGATATGTTTTGATATGTGATGTTATATACGCTATAGGATATGTCAACTAATATTATGGTATAAATGAAATGACGTGTTATGGAACGATAAGCTATGTTATGTTATGACATGTCATAATATGTTATGATACGTTACGCTATGTTATGACATGTTATGATATGTTTTGAAATAAAGAAATCTATGATGCAAAACCTCCTGACGTCATGTCTTAGAAGCTATGTTATGCATGGAATGATGTATAAGAATCATGGATATATAATTACTAGATTTAATTTGTTATGAAAGAATGGAGGTTATCTGACCTCATACAAAACTGTGTGTTCACGTGTATTGGGATACTTTCTCGTTATGTTATGTTAGTACATGTGCGTGCCTTCAATGTTTATGTTTGCTATGATATCATGCAGGTCTTTCTCTCCATGGTGTCCGGCTACGCGTCAGCGCGTTTAACCCAACAGAAGCCGAGCCCAAGGGGTACATATAGGAGGTCGCTTGGGGAGTCCATGTGTGCGTGCGTGGGGAAATACCACGCATCCAACCCTGTCAGAACTGGAAAGAGCTCAAGGTTATGCTATGTTGTTTTAGATGATAGGTTTTCGTCATGTGCTACTCTTACATTTCAGGTAAAGGCAAGACACCCTTGTACGGATGATAGAGGCAGTGTGTGAAGACTATGGAACCAGTGTTAGGGTAGTTGCATTTCATCTTCCTTATTAGTCTTAGGTTAAATTAGGGCAACGTGTTGTTTTCTAATTTTTTGACGTATTGTTTATTCTCGTTTCTTACATGTTTTGGATTGATTTAAGAATTTTATTTTTAAAGTGTAATTACACGACATCATTTCTGAACTATTTAAAATGAATGTTTCCGCATAAAAAAAAGTTACATCATACACATTGTAGCGGCTATATTTCAGTAGAAAAATAATTGTGAGATCCAACAACGGTTGGAGAAGAGAACGAGTGGAACCTCTCCCTAACAGACGCGTTTGAAAATCGTAGAGCTGACGGCGATACGTAACGGGCCAAAGTAGACAATATTTTTTAGCGGTGGACTTGGGCTATTACATCGAGTGTAATGCCCGTAATTTTTCTTGCCTAAATTAGAGGCGCGACTACATGCATGCCTTTGATAACATATGTGGAATTTTAAAATAAAACATTTTTAAACAAAACCATGGACTTATATGTTTAATTTAAAACAAGAAACTAGATCCTATCTTGACTTCCATGGCCATTCCAACATTCACCTTTATCCGTGCAGGGGCGCTTTACCTCTACCTAGAAAATAAGAGTAGCACGTGTGTTCAATATTATAAGAAATACTCAGTATATCACCCCACTATTGGGGCTAGTAATGCTATCATACACGTATATGATTGGACCTATCCTTTAAAGCCGTAGTATGACCTTAGACTATTTCCACTTTCGAGCAGAGTTGGATGTGTGGTACTTCCTCAAACACGACCCACGTACGCGCACATGGATTCACCAAGCGGGTTCGTATACGTACCCTCTGGGCCTGGTTTGATAGGGCACAATGCGCTAACACGTCACCAAATGCCACAGAAAAAAGACATGCCCGTATGATATCATGATGAACATAAATAACAAAGGTACGCGTCCATACTAATATAACATAATGGGGGAAGTATCCCGATATACATGATATACATAAATGCATGAGGTTCCCTTGGTTTAAAATCATAGCATAACATCAACATCATTTCCTATTTACTTTCATCTATGACGTAGTACATATATGCATCATGTATACATGGTAGTCATCATGACCTTCAACTTATATCATCACATAGTGTTACATGGCAAAAAATATAGCATGACGTACATAGTGTTTCGTTTCATTCGCATCATGACATAATGGATATCACATGCATACATAACATAACATCATGTCATTACATAGAACACGTAAACATAGCGTAACATTATGACACATGTAGGGACCACAGGACATGCGCATCATACACATTCAATTCTCCCAACTTCATTAATAACGTCACTTACTTGAGTCGTGGCCTAAGTCCCTAACTATTTTATAGTTGCTTTGAAATTGTCTTTTCATTTTTAACTTCACCTATAACAGGATAGAGAGCACGTGCGGGTCGGGCCGTAGACGGTGCGCAAGTCAAAACGTACGCGGGTTGGGCTGAGTTCGATTTGCAATGGGTGTGTGTGTGGGTCGGGCTGAATCCGAATTGCAATGAGTTCCTACCCGAATCCGACCCATGGGTCTTTCTGTTGTGTGACGAAAGCGGAACAAATGTACTCACAACACCAATGAACGAAATTACACAAAGAGACACCAAGATATTTACGTGGTTCGGAGAGAAGAAGTTCCCCTACATCCACTGGTAGCAACCAATCACTAATAAACAAAGTGTTACAAGTGAATACCTGACTATCACACTACAAAGACTTTCACTAATATGTCACTCAACAAATACAATGACACACAAAACTCTCCCAAATCTCGATATCAAATTCCCCGATATATAACATATGACTAAATCTAATCAAAATAACCAAATCAAATCAAAACTTATGACAATTTACAACACTTTCTTCTTTGCCCGATTCCTCTGCCTCGGATCCAGTTCCAATTTCCTCCTCCGAGTCTCTGTGGTTTCCTCTGCTACCGACAACGACAACAGCGCTTGTTGGAACTAATGCTCCTCGCCGTCGTGCCGAATTCATGCCATCAACTGAGATACACTGGTAAGTACCCTCTCTCTATCTTTCTCTCCCTCGCATACTCATGTATATTGGCGAGGATGTGTTGCATGACTTAGAGTGTGACAATGGCGCTTAAGAAAGCGCCTCGCCTAAAGTCTCACGATTTCGTGTAATGTTTTAATTTTTTGGTGCATACTTTTAAGTGACCCACAAGTCAAAAAGGAGAATCATGGCCAATAGACTTGAATAGAAGGAAAAAAAAAAAAAAAAAAAAAATTATCGGTCGATGTGTCGGTAACTTATAATCAAAACTTTGGAAAAAGATGGGACAATGGTGAAGGAAAAAGGGGTCAATGCCGGTAGCCGGTGGCTGCACGTTATGATGGCCAATTCCCCTTGTTATTATTCTTATTCTTATTCCTACTTGGAAGCCAATTGCCTTTAGTATTAATATTTCTGCCTTTTGCTTTTAAATATTTTAATAAAAATTTAAAAGGAGTCTTTGTTTTTATTACTTAAATTAATAAAAATAACCTTTTTTTTTTTTTAACTTTATACCTTATTATAAAAACAAAAATATAATTAAACCTAAAAAAAAATTAAAAATACTTTAAGCTTTTATAAAAAGTTCAAAAAATATTTATACAAAATAATATATATATATTTTAAAATTTTTTAAGTAATTTTTAAATATGGTTGTAATGCTAAAAGTATTTTTAAACTTAAAAAAAAAAATAAAATATATTAATAAAACTTTTTAAAAATAAATATTAACGAATATTTTTTTTAACTGAAAAAAAAATTACTAGTATTTTTTAGTATTATTGAGAGGAAAAAAAAAACAAAGTTGAATGATTTAGCGTTATTAATAAGCCATTTAATTCTATGTTAATTTTGAATTAAAATATTATTTTATTAAAATAAAATAAAAATAAAATACTAACCATAAATATATTTTTTTTATAAAAATAAATTCAAAGAATATTTTTATTTATTAAGCCAGGTTAATTTTGAATTACAACATGAAATTTTGTTACGATGAGTTTATAATAAGGAATACTCTGTGAGGCCTTCTGTGTAAGTTGAAATCAAAGCGATGAGAACTTATACTCAGAGTCGATATATTATATCAGTGTGGAGAGTCGTGTTTCATATAACTTGTATCAAAGCCATGTCAATAGAATCCCAAATGTCCAACAAAGAACTTGTTGGAGGCATACTTTGTTGGAGGGGAGATGTTGGATGAATGTCTCTCTCAAAGTAGACAATATTATACCATCGTAGAGAATCGTGTTGATATAAGTGTTACGATTATGAACATTAATTCTCTTGTTATGCTTCAACAAAGTAATGGTAAGAAATCTCTCGTGAAATGGAACAATCTTGCGTTGAAAGTTCTAGCAGAATCATACGATTTTTGGACCAATCCCCCTTTTGAACACAGTAAATTCTTCGTGTAAAGAAAGAAACAGAGAACCGCCATTAATGGTGGTTATGATGATGATGATGATTATGGATAATTGCAATTGGTGGGTTCTAAGATAAGCTTTCCAAGTCATTGGATGCCCCATTGATTCTCGATTTTCGAGCTCACGCATTCTCTCTCTTAAACTTCCATTTTGTGTAGAGGACGAACAGAAACAGGCGACACTCTGCTTCAGGTACTGAGAAATCACAAGCTTCTTCTCGATATTACTGAAAATTTCCCTTTCTGTTCGACGATTTTTTCAGAAACCATCTGTGGTTGTCGCATTATCGATTGGTTATGGTTGATGATGTTCTTCCGGGTGTGATAGGGGCAGCGGATTCTGCGGCTGGCAGTTTCTACATGTCAGAGCGACTGTTCTAA

mRNA sequence

ATGGCACAGGCACGGGAGGGCCAATGCCTGGATAGAACCCGGATGGGTGGATGTTTAGGAAGTCTCTATGAGATGAGCGACACGCGGGCCCGTTCTCGATGGCATAACCAGGTCTTTCTCTCCATGGTGTCCGGCTACGCGTCAGCGCGTTTAACCCAACAGAAGCCGAGCCCAAGGGGTACATATAGGAGGTCGCTTGGGGAGTCCATGTGTGCGTGCGTGGGGAAATACCACGCATCCAACCCTGTCAGAACTGGAAAGAGCTCAAGGTTATGCTATGTTGTTTTAGATGATAGGTTTTCGTCATGTGCTACTCTTACATTTCAGTTCCAATTTCCTCCTCCGAGTCTCTGTGGTTTCCTCTGCTACCGACAACGACAACAGCGCTTGTTGGAACTAATGCTCCTCGCCGTCGTGCCGAATTCATGCCATCAACTGAGATACACTGAGGACGAACAGAAACAGGCGACACTCTGCTTCAGAAACCATCTGTGGTTGTCGCATTATCGATTGGTTATGGTTGATGATGTTCTTCCGGGTGTGATAGGGGCAGCGGATTCTGCGGCTGGCAGTTTCTACATGTCAGAGCGACTGTTCTAA

Coding sequence (CDS)

ATGGCACAGGCACGGGAGGGCCAATGCCTGGATAGAACCCGGATGGGTGGATGTTTAGGAAGTCTCTATGAGATGAGCGACACGCGGGCCCGTTCTCGATGGCATAACCAGGTCTTTCTCTCCATGGTGTCCGGCTACGCGTCAGCGCGTTTAACCCAACAGAAGCCGAGCCCAAGGGGTACATATAGGAGGTCGCTTGGGGAGTCCATGTGTGCGTGCGTGGGGAAATACCACGCATCCAACCCTGTCAGAACTGGAAAGAGCTCAAGGTTATGCTATGTTGTTTTAGATGATAGGTTTTCGTCATGTGCTACTCTTACATTTCAGTTCCAATTTCCTCCTCCGAGTCTCTGTGGTTTCCTCTGCTACCGACAACGACAACAGCGCTTGTTGGAACTAATGCTCCTCGCCGTCGTGCCGAATTCATGCCATCAACTGAGATACACTGAGGACGAACAGAAACAGGCGACACTCTGCTTCAGAAACCATCTGTGGTTGTCGCATTATCGATTGGTTATGGTTGATGATGTTCTTCCGGGTGTGATAGGGGCAGCGGATTCTGCGGCTGGCAGTTTCTACATGTCAGAGCGACTGTTCTAA

Protein sequence

MAQAREGQCLDRTRMGGCLGSLYEMSDTRARSRWHNQVFLSMVSGYASARLTQQKPSPRGTYRRSLGESMCACVGKYHASNPVRTGKSSRLCYVVLDDRFSSCATLTFQFQFPPPSLCGFLCYRQRQQRLLELMLLAVVPNSCHQLRYTEDEQKQATLCFRNHLWLSHYRLVMVDDVLPGVIGAADSAAGSFYMSERLF
Homology
[Close]
BLAST of Carg22568 vs. NCBI nr
Match: KAG7012557.1 (hypothetical protein SDJN02_25309, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 415.6 bits (1067), Expect = 2.4e-112
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0 

Query: 1   MAQAREGQCLDRTRMGGCLGSLYEMSDTRARSRWHNQVFLSMVSGYASARLTQQKPSPRG 60
           MAQAREGQCLDRTRMGGCLGSLYEMSDTRARSRWHNQVFLSMVSGYASARLTQQKPSPRG
Sbjct: 1   MAQAREGQCLDRTRMGGCLGSLYEMSDTRARSRWHNQVFLSMVSGYASARLTQQKPSPRG 60

Query: 61  TYRRSLGESMCACVGKYHASNPVRTGKSSRLCYVVLDDRFSSCATLTFQFQFPPPSLCGF 120
           TYRRSLGESMCACVGKYHASNPVRTGKSSRLCYVVLDDRFSSCATLTFQFQFPPPSLCGF
Sbjct: 61  TYRRSLGESMCACVGKYHASNPVRTGKSSRLCYVVLDDRFSSCATLTFQFQFPPPSLCGF 120

Query: 121 LCYRQRQQRLLELMLLAVVPNSCHQLRYTEDEQKQATLCFRNHLWLSHYRLVMVDDVLPG 180
           LCYRQRQQRLLELMLLAVVPNSCHQLRYTEDEQKQATLCFRNHLWLSHYRLVMVDDVLPG
Sbjct: 121 LCYRQRQQRLLELMLLAVVPNSCHQLRYTEDEQKQATLCFRNHLWLSHYRLVMVDDVLPG 180

Query: 181 VIGAADSAAGSFYMSERLF 200
           VIGAADSAAGSFYMSERLF
Sbjct: 181 VIGAADSAAGSFYMSERLF 199

[Close]
BLAST of Carg22568 vs. NCBI nr
Match: KAG6573390.1 (hypothetical protein SDJN03_27277, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-05
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 134 MLLAVVPNSCHQLRYTEDEQKQATLCFR 162
           MLLAVVPNSCH+LRYTEDEQKQATLCFR
Sbjct: 1   MLLAVVPNSCHRLRYTEDEQKQATLCFR 28

The following BLAST results are available for this feature:
BLAST of Carg22568 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7012557.12.4e-112100.00hypothetical protein SDJN02_25309, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6573390.11.5e-0596.43hypothetical protein SDJN03_27277, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg22568 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg22568 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg22568 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22568-RACarg22568-RAmRNA