Carg22528 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22528
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Pentatricopeptide repeat
Location	Carg_Chr12: 1008693 .. 1009445 (-)
RNA-Seq Expression	Carg22528
Synteny	Carg22528

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAAGCAGTACAAGATTGAGCCTGTAATGGACCATTTTGCATGCATGATTGACATGTATATGAGGTTGGGTCGGGTGGAAGAAGCTTTTGATGTAGTCAAGAAGATGAACTTTGAGCCTAATGAAATTATATGGTCCATGTTAATTGCAGGATGTCGAAGTCATGGGAACTCCGAATTGGGGTTTTATGCTGCTGAGCAGTTACTCAAACTCAGGCCGAAAGACACCGAGACCTACATCTCTCTGCTAAATATGTACATCTCTGCAGGGAGATGGAAGGATGTTTCCACAGTGAGGAAATTAATGAAAGAAGAAAAGCTTGGAAAGTTGAAGGACTGGAGCTGGATTAGCATCAAAGAAAAAGTTTATTCATTTAAACCCAATGACAAATCACACTGTCAAACTGCAGAGATGTACAAGCTGTTGGAGACTTTACTCGACGAAGTAAAACCTCTTGGTTACGAACCTGTTCAATATATGGAGGTAATCGAAGAGGAGAAAGGCGATGAAACAGTGTTCTCGTCCACCATTTATCACAGCGAGAGGTTAGCCATTGCTTTTGGCTTGTTAAACCTGCCAAAAGCCACCCAGATTCGGGTTGTCAAGAACATCACCCTGTGTAGGGACTGCCATAATTTTATCCGATTCGTATCATTATTGACAGGCAGGGAAATCGTCATCCGAGATAGCAAGCAGCTTCACAAGTTTTCAAACGGATACTGTTCTTGTAGAGGTTTTGGAGATCTTTAG

mRNA sequence

ATGCAGAAGCAGTACAAGATTGAGCCTGTAATGGACCATTTTGCATGCATGATTGACATGTATATGAGGTTGGGTCGGGTGGAAGAAGCTTTTGATGTAGTCAAGAAGATGAACTTTGAGCCTAATGAAATTATATGGTCCATGTTAATTGCAGGATGTCGAAGTCATGGGAACTCCGAATTGGGGTTTTATGCTGCTGAGCAGTTACTCAAACTCAGGCCGAAAGACACCGAGACCTACATCTCTCTGCTAAATATGTACATCTCTGCAGGGAGATGGAAGGATGTTTCCACAGTGAGGAAATTAATGAAAGAAGAAAAGCTTGGAAAGTTGAAGGACTGGAGCTGGATTAGCATCAAAGAAAAAGTTTATTCATTTAAACCCAATGACAAATCACACTGTCAAACTGCAGAGATGTACAAGCTGTTGGAGACTTTACTCGACGAAGTAAAACCTCTTGGTTACGAACCTGTTCAATATATGGAGGTAATCGAAGAGGAGAAAGGCGATGAAACAGTGTTCTCGTCCACCATTTATCACAGCGAGAGGTTAGCCATTGCTTTTGGCTTGTTAAACCTGCCAAAAGCCACCCAGATTCGGGTTGTCAAGAACATCACCCTGTGTAGGGACTGCCATAATTTTATCCGATTCGTATCATTATTGACAGGCAGGGAAATCGTCATCCGAGATAGCAAGCAGCTTCACAAGTTTTCAAACGGATACTGTTCTTGTAGAGGTTTTGGAGATCTTTAG

Coding sequence (CDS)

ATGCAGAAGCAGTACAAGATTGAGCCTGTAATGGACCATTTTGCATGCATGATTGACATGTATATGAGGTTGGGTCGGGTGGAAGAAGCTTTTGATGTAGTCAAGAAGATGAACTTTGAGCCTAATGAAATTATATGGTCCATGTTAATTGCAGGATGTCGAAGTCATGGGAACTCCGAATTGGGGTTTTATGCTGCTGAGCAGTTACTCAAACTCAGGCCGAAAGACACCGAGACCTACATCTCTCTGCTAAATATGTACATCTCTGCAGGGAGATGGAAGGATGTTTCCACAGTGAGGAAATTAATGAAAGAAGAAAAGCTTGGAAAGTTGAAGGACTGGAGCTGGATTAGCATCAAAGAAAAAGTTTATTCATTTAAACCCAATGACAAATCACACTGTCAAACTGCAGAGATGTACAAGCTGTTGGAGACTTTACTCGACGAAGTAAAACCTCTTGGTTACGAACCTGTTCAATATATGGAGGTAATCGAAGAGGAGAAAGGCGATGAAACAGTGTTCTCGTCCACCATTTATCACAGCGAGAGGTTAGCCATTGCTTTTGGCTTGTTAAACCTGCCAAAAGCCACCCAGATTCGGGTTGTCAAGAACATCACCCTGTGTAGGGACTGCCATAATTTTATCCGATTCGTATCATTATTGACAGGCAGGGAAATCGTCATCCGAGATAGCAAGCAGCTTCACAAGTTTTCAAACGGATACTGTTCTTGTAGAGGTTTTGGAGATCTTTAG

Protein sequence

MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSELGFYAAEQLLKLRPKDTETYISLLNMYISAGRWKDVSTVRKLMKEEKLGKLKDWSWISIKEKVYSFKPNDKSHCQTAEMYKLLETLLDEVKPLGYEPVQYMEVIEEEKGDETVFSSTIYHSERLAIAFGLLNLPKATQIRVVKNITLCRDCHNFIRFVSLLTGREIVIRDSKQLHKFSNGYCSCRGFGDL

Homology

[Close]

BLAST of Carg22528 vs. NCBI nr
Match: KAG7020235.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 513.8 bits (1322), Expect = 8.1e-142
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0


Query: 1   MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSE 60
           MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSE
Sbjct: 1   MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSE 60

Query: 61  LGFYAAEQLLKLRPKDTETYISLLNMYISAGRWKDVSTVRKLMKEEKLGKLKDWSWISIK 120
           LGFYAAEQLLKLRPKDTETYISLLNMYISAGRWKDVSTVRKLMKEEKLGKLKDWSWISIK
Sbjct: 61  LGFYAAEQLLKLRPKDTETYISLLNMYISAGRWKDVSTVRKLMKEEKLGKLKDWSWISIK 120

Query: 121 EKVYSFKPNDKSHCQTAEMYKLLETLLDEVKPLGYEPVQYMEVIEEEKGDETVFSSTIYH 180
           EKVYSFKPNDKSHCQTAEMYKLLETLLDEVKPLGYEPVQYMEVIEEEKGDETVFSSTIYH
Sbjct: 121 EKVYSFKPNDKSHCQTAEMYKLLETLLDEVKPLGYEPVQYMEVIEEEKGDETVFSSTIYH 180

Query: 181 SERLAIAFGLLNLPKATQIRVVKNITLCRDCHNFIRFVSLLTGREIVIRDSKQLHKFSNG 240
           SERLAIAFGLLNLPKATQIRVVKNITLCRDCHNFIRFVSLLTGREIVIRDSKQLHKFSNG
Sbjct: 181 SERLAIAFGLLNLPKATQIRVVKNITLCRDCHNFIRFVSLLTGREIVIRDSKQLHKFSNG 240

Query: 241 YCSCRGFGDL 251
           YCSCRGFGDL
Sbjct: 241 YCSCRGFGDL 250

[Close]

BLAST of Carg22528 vs. NCBI nr
Match: XP_023538358.1 (pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita pepo subsp. pepo] >XP_023538359.1 pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 510.8 bits (1314), Expect = 6.8e-141
Identity = 247/250 (98.80%), Postives = 250/250 (100.00%), Query Frame = 0


Query: 1   MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSE 60
           MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSE
Sbjct: 514 MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSE 573

Query: 61  LGFYAAEQLLKLRPKDTETYISLLNMYISAGRWKDVSTVRKLMKEEKLGKLKDWSWISIK 120
           LGFYAAEQLLKLRPKDTETYISLLNMYISAGRWKDVSTVRK+MKEEKLGKLKDWSWISIK
Sbjct: 574 LGFYAAEQLLKLRPKDTETYISLLNMYISAGRWKDVSTVRKVMKEEKLGKLKDWSWISIK 633

Query: 121 EKVYSFKPNDKSHCQTAEMYKLLETLLDEVKPLGYEPVQYMEVIEEEKGDETVFSSTIYH 180
           EKVYSFKPNDKSHCQTAEMYKLLETLLDEVKPLGYEPVQYMEVIEEEKGDETVFSSTIYH
Sbjct: 634 EKVYSFKPNDKSHCQTAEMYKLLETLLDEVKPLGYEPVQYMEVIEEEKGDETVFSSTIYH 693

Query: 181 SERLAIAFGLLNLPKATQIRVVKNITLCRDCHNFIRFVSLLTGREIVIRDSKQLHKFSNG 240
           SE+LAIAFGLLNLPKATQIRVVKNIT+CRDCHNFIRFVSLLTGREIVIRDSKQLHKFSNG
Sbjct: 694 SEKLAIAFGLLNLPKATQIRVVKNITMCRDCHNFIRFVSLLTGREIVIRDSKQLHKFSNG 753

Query: 241 YCSCRGFGDL 251
           YCSCRGFGDL
Sbjct: 754 YCSCRGFGDL 763

[Close]

BLAST of Carg22528 vs. NCBI nr
Match: XP_023001915.1 (pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita maxima] >XP_023001916.1 pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita maxima])

HSP 1 Score: 501.5 bits (1290), Expect = 4.2e-138
Identity = 242/250 (96.80%), Postives = 248/250 (99.20%), Query Frame = 0


Query: 1   MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSE 60
           MQKQ +IEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSE
Sbjct: 514 MQKQCRIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSE 573

Query: 61  LGFYAAEQLLKLRPKDTETYISLLNMYISAGRWKDVSTVRKLMKEEKLGKLKDWSWISIK 120
           LGFYAAEQLLKLRPKDTE+YISLLNMYISAGRWKDVSTVRKLMKEEK+GKLKDWSWISIK
Sbjct: 574 LGFYAAEQLLKLRPKDTESYISLLNMYISAGRWKDVSTVRKLMKEEKVGKLKDWSWISIK 633

Query: 121 EKVYSFKPNDKSHCQTAEMYKLLETLLDEVKPLGYEPVQYMEVIEEEKGDETVFSSTIYH 180
           EKVYSFKPNDKSHCQTAEMYKLLETLLDEVKPLGYEPVQYMEVIEEEKGDETVFSSTIYH
Sbjct: 634 EKVYSFKPNDKSHCQTAEMYKLLETLLDEVKPLGYEPVQYMEVIEEEKGDETVFSSTIYH 693

Query: 181 SERLAIAFGLLNLPKATQIRVVKNITLCRDCHNFIRFVSLLTGREIVIRDSKQLHKFSNG 240
           SE+LA+AFGLLNLPKATQIRVVKNIT+CRDCHNFIRFVSLLTGREIVIRDSKQLHKFSNG
Sbjct: 694 SEKLAVAFGLLNLPKATQIRVVKNITMCRDCHNFIRFVSLLTGREIVIRDSKQLHKFSNG 753

Query: 241 YCSCRGFGDL 251
           YCSC GFGDL
Sbjct: 754 YCSCGGFGDL 763

[Close]

BLAST of Carg22528 vs. NCBI nr
Match: KAG6585316.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 478.8 bits (1231), Expect = 2.9e-131
Identity = 228/250 (91.20%), Postives = 240/250 (96.00%), Query Frame = 0


Query: 1   MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSE 60
           MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNE+IWSM+IAGCRSHGNSE
Sbjct: 514 MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEVIWSMIIAGCRSHGNSE 573

Query: 61  LGFYAAEQLLKLRPKDTETYISLLNMYISAGRWKDVSTVRKLMKEEKLGKLKDWSWISIK 120
           LGFYAAEQLLKLRPKDTETY+SLLNMY+SAGRWKDVS VRKLMKEEKLGKLKDWSWI+IK
Sbjct: 574 LGFYAAEQLLKLRPKDTETYVSLLNMYLSAGRWKDVSKVRKLMKEEKLGKLKDWSWITIK 633

Query: 121 EKVYSFKPNDKSHCQTAEMYKLLETLLDEVKPLGYEPVQYMEVIEEEKGDETVFSSTIYH 180
           EKVYSFKPNDKSH QTAEMY+LLETLLDEVKPLGYEP QY E IEEE G+ETVFSSTIYH
Sbjct: 634 EKVYSFKPNDKSHHQTAEMYELLETLLDEVKPLGYEPGQYTEAIEEENGEETVFSSTIYH 693

Query: 181 SERLAIAFGLLNLPKATQIRVVKNITLCRDCHNFIRFVSLLTGREIVIRDSKQLHKFSNG 240
           SE+LA+AF LLNLP AT IRVVK+IT+CRDCHNFIRF+SLLTGREIVIRD KQLHKFSNG
Sbjct: 694 SEKLAVAFSLLNLPTATPIRVVKSITMCRDCHNFIRFISLLTGREIVIRDKKQLHKFSNG 753

Query: 241 YCSCRGFGDL 251
           YCSCRGFGDL
Sbjct: 754 YCSCRGFGDL 763

[Close]

BLAST of Carg22528 vs. NCBI nr
Match: KAG7020234.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 478.8 bits (1231), Expect = 2.9e-131
Identity = 228/250 (91.20%), Postives = 240/250 (96.00%), Query Frame = 0


Query: 1   MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSE 60
           MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNE+IWSM+IAGCRSHGNSE
Sbjct: 36  MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEVIWSMIIAGCRSHGNSE 95

Query: 61  LGFYAAEQLLKLRPKDTETYISLLNMYISAGRWKDVSTVRKLMKEEKLGKLKDWSWISIK 120
           LGFYAAEQLLKLRPKDTETY+SLLNMY+SAGRWKDVS VRKLMKEEKLGKLKDWSWI+IK
Sbjct: 96  LGFYAAEQLLKLRPKDTETYVSLLNMYLSAGRWKDVSKVRKLMKEEKLGKLKDWSWITIK 155

Query: 121 EKVYSFKPNDKSHCQTAEMYKLLETLLDEVKPLGYEPVQYMEVIEEEKGDETVFSSTIYH 180
           EKVYSFKPNDKSH QTAEMY+LLETLLDEVKPLGYEP QY E IEEE G+ETVFSSTIYH
Sbjct: 156 EKVYSFKPNDKSHHQTAEMYELLETLLDEVKPLGYEPGQYTEAIEEENGEETVFSSTIYH 215

Query: 181 SERLAIAFGLLNLPKATQIRVVKNITLCRDCHNFIRFVSLLTGREIVIRDSKQLHKFSNG 240
           SE+LA+AF LLNLP AT IRVVK+IT+CRDCHNFIRF+SLLTGREIVIRD KQLHKFSNG
Sbjct: 216 SEKLAVAFSLLNLPTATPIRVVKSITMCRDCHNFIRFISLLTGREIVIRDKKQLHKFSNG 275

Query: 241 YCSCRGFGDL 251
           YCSCRGFGDL
Sbjct: 276 YCSCRGFGDL 285

[Close]

BLAST of Carg22528 vs. ExPASy Swiss-Prot
Match: Q9SHZ8 (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H41 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.1e-56
Identity = 98/244 (40.16%), Postives = 163/244 (66.80%), Query Frame = 0


Query: 6   KIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSELGFYA 65
           KI P + H+ACM+D++ R G ++EA + ++KM  EP+ + W  L++ CR H N +LG  A
Sbjct: 546 KIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVA 605

Query: 66  AEQLLKLRPKDTETYISLLNMYISAGRWKDVSTVRKLMKEEKLGKLKDWSWISIKEKVYS 125
           AE+LL L P+++  Y +L N+Y + G+W++ + +RK MK+ ++ K + +SWI +K KV+ 
Sbjct: 606 AERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHV 665

Query: 126 FKPNDKSHCQTAEMYKLLETLLDEVKPLGYEP--VQYMEVIEEEKGDETVFSSTIYHSER 185
           F   D +H +  E+Y  ++ + DE+K +GY P     +  +EEE  ++ +     +HSE+
Sbjct: 666 FGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQIL----RHHSEK 725

Query: 186 LAIAFGLLNLPKATQIRVVKNITLCRDCHNFIRFVSLLTGREIVIRDSKQLHKFSNGYCS 245
           LAIAFGL++ P  T +R++KN+ +C DCH  I+F+S L GREI++RD+ + H F +G+CS
Sbjct: 726 LAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCS 785

Query: 246 CRGF 248
           CR +
Sbjct: 786 CRDY 785

[Close]

BLAST of Carg22528 vs. ExPASy Swiss-Prot
Match: Q0WSH6 (Pentatricopeptide repeat-containing protein At4g14850 OS=Arabidopsis thaliana OX=3702 GN=LOI1 PE=1 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 3.5e-55
Identity = 102/250 (40.80%), Postives = 158/250 (63.20%), Query Frame = 0


Query: 1   MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSE 60
           M+  Y IEP  +H++C++DM  R G VE A++ +KKM  +P   +W  L   CR HG  +
Sbjct: 439 MRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQ 498

Query: 61  LGFYAAEQLLKLRPKDTETYISLLNMYISAGRWKDVSTVRKLMKEEKLGKLKDWSWISIK 120
           LG  AAE L KL PKD+  ++ L N + +AGRW + +TVR+ +K   + K   +SWI++K
Sbjct: 499 LGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVK 558

Query: 121 EKVYSFKPNDKSHCQTAEMYKLLETLLDEVKPLGYEP---VQYMEVIEEEKGDETVFSST 180
            +V++F+  D+SH    E+   L  L +E++  GY+P   +   ++ EEEK  E      
Sbjct: 559 NQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAE-----V 618

Query: 181 IYHSERLAIAFGLLNLPKATQIRVVKNITLCRDCHNFIRFVSLLTGREIVIRDSKQLHKF 240
            +HSE+LA+AFGLL+LP +  IR+ KN+ +C DCH+F +FVS    REI++RD+ + H+F
Sbjct: 619 SHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRF 678

Query: 241 SNGYCSCRGF 248
            +G CSC+ +
Sbjct: 679 KDGICSCKDY 683

[Close]

BLAST of Carg22528 vs. ExPASy Swiss-Prot
Match: Q9M4P3 (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=DYW10 PE=2 SV=3)

HSP 1 Score: 215.7 bits (548), Expect = 6.0e-55
Identity = 99/246 (40.24%), Postives = 164/246 (66.67%), Query Frame = 0


Query: 1   MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSE 60
           M + YK+EP  DH+ CM+D+  R G++EEA  +++ M F P+  ++  L+  CR H N E
Sbjct: 411 MVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVE 470

Query: 61  LGFYAAEQLLKLRPKDTETYISLLNMYISAGRWKDVSTVRKLMKEEKLGKLKDWSWISIK 120
           L  +AAE+LL+L  ++   Y+ L N+Y S  RW+DV+ VRK MKE  + K+  +SWI I+
Sbjct: 471 LAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIR 530

Query: 121 EKVYSFKPNDKSHCQTAEMYKLLETLLDEVKPLGYEP-VQY-MEVIEEEKGDETVFSSTI 180
            KV+ F+ +D+ H +   ++K L+ L  ++K  GY+P +++ +  +EEE+ ++ +    +
Sbjct: 531 NKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLL----L 590

Query: 181 YHSERLAIAFGLLNLPKATQIRVVKNITLCRDCHNFIRFVSLLTGREIVIRDSKQLHKFS 240
           +HSE+LA+AFG + LP+ +QI+V KN+ +C DCH  I+F+S +  REI++RD+ + H F 
Sbjct: 591 WHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFK 650

Query: 241 NGYCSC 245
           +G CSC
Sbjct: 651 DGSCSC 652

[Close]

BLAST of Carg22528 vs. ExPASy Swiss-Prot
Match: Q5G1T1 (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.3e-53
Identity = 95/249 (38.15%), Postives = 157/249 (63.05%), Query Frame = 0


Query: 1   MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSE 60
           M + +KI+P M+H+ACM+D+  R G + +AF+ +  M F+ + ++W   +  CR H N+E
Sbjct: 601 MYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTE 660

Query: 61  LGFYAAEQLLKLRPKDTETYISLLNMYISAGRWKDVSTVRKLMKEEKLGKLKDWSWISIK 120
           LG  AA ++L+L P +   YI L N+Y  AG+W++ + +R+ MKE  L K    SWI + 
Sbjct: 661 LGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVG 720

Query: 121 EKVYSFKPNDKSHCQTAEMYKLLETLLDEVKPLGYEPVQYMEVIE-EEKGDETVFSSTIY 180
           +K++ F   D +H    ++Y  L+ L+ E+K  GY P   + + + EE+ DE      +Y
Sbjct: 721 DKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLY 780

Query: 181 -HSERLAIAFGLLNLPKATQIRVVKNITLCRDCHNFIRFVSLLTGREIVIRDSKQLHKFS 240
            HSE++A+AFGL++  K+  +RV KN+ +C DCHN ++++S ++GREIV+RD  + H F 
Sbjct: 781 QHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFK 840

Query: 241 NGYCSCRGF 248
           +G CSC  +
Sbjct: 841 DGKCSCNDY 849

[Close]

BLAST of Carg22528 vs. ExPASy Swiss-Prot
Match: A8MQA3 (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 208.8 bits (530), Expect = 7.3e-53
Identity = 100/250 (40.00%), Postives = 156/250 (62.40%), Query Frame = 0


Query: 1   MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSE 60
           M+++YKIEP ++HF CM+D+  R G+V++A++ +K M  +PN +IW  L+  C  HG+S+
Sbjct: 350 MREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSD 409

Query: 61  LGFYAAEQLLKLRPKDTETYISLLNMYISAGRWKDVSTVRKLMKEEKLGKLKDWSWISIK 120
           L  +A  Q+L+L P  +  Y+ L NMY S  RW DV  +RK M  + + K+   S + + 
Sbjct: 410 LAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVG 469

Query: 121 EKVYSFKPNDKSHCQTAEMYKLLETLLDEVKPLGYEPV---QYMEVIEEEKGDETVFSST 180
            +V+ F   DKSH Q+  +Y  L+ +   ++  GY P     Y++V EEEK      ++ 
Sbjct: 470 NRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKE-----NAV 529

Query: 181 IYHSERLAIAFGLLNLPKATQIRVVKNITLCRDCHNFIRFVSLLTGREIVIRDSKQLHKF 240
           +YHSE++AIAF L++ P+ + I VVKN+ +C DCH  I+ VS +  REIV+RD  + H F
Sbjct: 530 VYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHF 589

Query: 241 SNGYCSCRGF 248
            NG CSC+ +
Sbjct: 590 KNGSCSCQDY 594

[Close]

BLAST of Carg22528 vs. ExPASy TrEMBL
Match: A0A6J1KJZ5 (pentatricopeptide repeat-containing protein At4g21065-like OS=Cucurbita maxima OX=3661 GN=LOC111495952 PE=3 SV=1)

HSP 1 Score: 501.5 bits (1290), Expect = 2.0e-138
Identity = 242/250 (96.80%), Postives = 248/250 (99.20%), Query Frame = 0


Query: 1   MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSE 60
           MQKQ +IEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSE
Sbjct: 514 MQKQCRIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSE 573

Query: 61  LGFYAAEQLLKLRPKDTETYISLLNMYISAGRWKDVSTVRKLMKEEKLGKLKDWSWISIK 120
           LGFYAAEQLLKLRPKDTE+YISLLNMYISAGRWKDVSTVRKLMKEEK+GKLKDWSWISIK
Sbjct: 574 LGFYAAEQLLKLRPKDTESYISLLNMYISAGRWKDVSTVRKLMKEEKVGKLKDWSWISIK 633

Query: 121 EKVYSFKPNDKSHCQTAEMYKLLETLLDEVKPLGYEPVQYMEVIEEEKGDETVFSSTIYH 180
           EKVYSFKPNDKSHCQTAEMYKLLETLLDEVKPLGYEPVQYMEVIEEEKGDETVFSSTIYH
Sbjct: 634 EKVYSFKPNDKSHCQTAEMYKLLETLLDEVKPLGYEPVQYMEVIEEEKGDETVFSSTIYH 693

Query: 181 SERLAIAFGLLNLPKATQIRVVKNITLCRDCHNFIRFVSLLTGREIVIRDSKQLHKFSNG 240
           SE+LA+AFGLLNLPKATQIRVVKNIT+CRDCHNFIRFVSLLTGREIVIRDSKQLHKFSNG
Sbjct: 694 SEKLAVAFGLLNLPKATQIRVVKNITMCRDCHNFIRFVSLLTGREIVIRDSKQLHKFSNG 753

Query: 241 YCSCRGFGDL 251
           YCSC GFGDL
Sbjct: 754 YCSCGGFGDL 763

[Close]

BLAST of Carg22528 vs. ExPASy TrEMBL
Match: A0A6J1GH28 (putative pentatricopeptide repeat-containing protein At5g52630 OS=Cucurbita moschata OX=3662 GN=LOC111454156 PE=3 SV=1)

HSP 1 Score: 477.6 bits (1228), Expect = 3.1e-131
Identity = 229/250 (91.60%), Postives = 238/250 (95.20%), Query Frame = 0


Query: 1   MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSE 60
           MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSE
Sbjct: 514 MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSE 573

Query: 61  LGFYAAEQLLKLRPKDTETYISLLNMYISAGRWKDVSTVRKLMKEEKLGKLKDWSWISIK 120
           LGFY+AEQLLKLRPKD ETY+SLLNMYISAGRWKDVS VRKLM EEKLGKLKDWSWISIK
Sbjct: 574 LGFYSAEQLLKLRPKDAETYVSLLNMYISAGRWKDVSKVRKLMTEEKLGKLKDWSWISIK 633

Query: 121 EKVYSFKPNDKSHCQTAEMYKLLETLLDEVKPLGYEPVQYMEVIEEEKGDETVFSSTIYH 180
           EKVYSFKPNDKSH QT EMY+LLETLLDEVKPLGYEPVQY E IEEE G+ETVFSSTIYH
Sbjct: 634 EKVYSFKPNDKSHHQTTEMYELLETLLDEVKPLGYEPVQYTEAIEEENGEETVFSSTIYH 693

Query: 181 SERLAIAFGLLNLPKATQIRVVKNITLCRDCHNFIRFVSLLTGREIVIRDSKQLHKFSNG 240
           SE+LA+AF LLNLP AT IRVVK+IT+CRDCHNFIRF+SLLTGREIVIRD KQLHKFSNG
Sbjct: 694 SEKLAVAFSLLNLPTATPIRVVKSITMCRDCHNFIRFISLLTGREIVIRDKKQLHKFSNG 753

Query: 241 YCSCRGFGDL 251
           YCSCRGFGDL
Sbjct: 754 YCSCRGFGDL 763

[Close]

BLAST of Carg22528 vs. ExPASy TrEMBL
Match: A0A6J1KHZ4 (putative pentatricopeptide repeat-containing protein At5g52630 OS=Cucurbita maxima OX=3661 GN=LOC111495953 PE=3 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 5.3e-131
Identity = 227/250 (90.80%), Postives = 240/250 (96.00%), Query Frame = 0


Query: 1   MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSE 60
           MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFE NE+IWSM+IAGCRSHGNSE
Sbjct: 514 MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEANEVIWSMIIAGCRSHGNSE 573

Query: 61  LGFYAAEQLLKLRPKDTETYISLLNMYISAGRWKDVSTVRKLMKEEKLGKLKDWSWISIK 120
           LGFYAA+QLLKLRPKDTETY+SLLNMYISAGRWKDVS VRKLM EEKLGKLKDWSWI+IK
Sbjct: 574 LGFYAADQLLKLRPKDTETYVSLLNMYISAGRWKDVSKVRKLMTEEKLGKLKDWSWITIK 633

Query: 121 EKVYSFKPNDKSHCQTAEMYKLLETLLDEVKPLGYEPVQYMEVIEEEKGDETVFSSTIYH 180
           EKVYSFKP DKSH QTAEMY+LLETLLDEVKPLGYEPVQYME+ EEEKG+ET FSSTIYH
Sbjct: 634 EKVYSFKPKDKSHYQTAEMYELLETLLDEVKPLGYEPVQYMELTEEEKGEETAFSSTIYH 693

Query: 181 SERLAIAFGLLNLPKATQIRVVKNITLCRDCHNFIRFVSLLTGREIVIRDSKQLHKFSNG 240
           SE+LA+AFGLLNLP AT IRVVK+IT+CRDCHNFIRF+SLLTGREIVIRD KQLHKFSNG
Sbjct: 694 SEKLAVAFGLLNLPTATPIRVVKSITMCRDCHNFIRFISLLTGREIVIRDRKQLHKFSNG 753

Query: 241 YCSCRGFGDL 251
           YCSCRGFGDL
Sbjct: 754 YCSCRGFGDL 763

[Close]

BLAST of Carg22528 vs. ExPASy TrEMBL
Match: A0A6J1BQL4 (putative pentatricopeptide repeat-containing protein At5g52630 OS=Momordica charantia OX=3673 GN=LOC111004719 PE=3 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 7.7e-122
Identity = 216/250 (86.40%), Postives = 232/250 (92.80%), Query Frame = 0


Query: 1   MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSE 60
           M KQY I+PVMDHFAC++DMY+RLGRVEEAFDVVKKM+FEPNEIIWSMLIAGCRSHGNSE
Sbjct: 515 MLKQYNIKPVMDHFACLMDMYLRLGRVEEAFDVVKKMSFEPNEIIWSMLIAGCRSHGNSE 574

Query: 61  LGFYAAEQLLKLRPKDTETYISLLNMYISAGRWKDVSTVRKLMKEEKLGKLKDWSWISIK 120
           LGFYAAEQLLKLRPKDTE Y+SLLNMY+S GRWKDVS VRKLMKEEKLGKLKDWSWISIK
Sbjct: 575 LGFYAAEQLLKLRPKDTEIYVSLLNMYLSEGRWKDVSKVRKLMKEEKLGKLKDWSWISIK 634

Query: 121 EKVYSFKPNDKSHCQTAEMYKLLETLLDEVKPLGYEPVQYMEVIEEEKGDETVFSSTIYH 180
           EKVYSFKPNDKSH Q+AEMY LLE +LDEVK LGYEPV+YMEVIEEE  +E VFSSTIYH
Sbjct: 635 EKVYSFKPNDKSHSQSAEMYNLLENVLDEVKNLGYEPVEYMEVIEEE-DEEKVFSSTIYH 694

Query: 181 SERLAIAFGLLNLPKATQIRVVKNITLCRDCHNFIRFVSLLTGREIVIRDSKQLHKFSNG 240
           SE+LA+AFGLLNLP AT IRVVK+IT+CRDCHNFIRF+SLL GREIVIRDSKQLHKF NG
Sbjct: 695 SEKLAVAFGLLNLPTATPIRVVKSITMCRDCHNFIRFISLLKGREIVIRDSKQLHKFLNG 754

Query: 241 YCSCRGFGDL 251
            CSC GFGDL
Sbjct: 755 CCSCGGFGDL 763

[Close]

BLAST of Carg22528 vs. ExPASy TrEMBL
Match: A0A0A0LRW6 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G372180 PE=3 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 4.2e-120
Identity = 208/249 (83.53%), Postives = 231/249 (92.77%), Query Frame = 0


Query: 1   MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSE 60
           MQKQY I+PVMDHFAC+IDMY+RLGRVEEAFDVV KMNFEPNE IWSMLIAGCRSHG S+
Sbjct: 505 MQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSD 564

Query: 61  LGFYAAEQLLKLRPKDTETYISLLNMYISAGRWKDVSTVRKLMKEEKLGKLKDWSWISIK 120
           LGFYAAEQLLKL+PKD ETY+SLLNM+ISAGRWKDVS VRKLMKEEK+GKLKDWSWISIK
Sbjct: 565 LGFYAAEQLLKLKPKDVETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWISIK 624

Query: 121 EKVYSFKPNDKSHCQTAEMYKLLETLLDEVKPLGYEPVQYMEVIEEEKGDETVFSSTIYH 180
           EKVYSFKPNDKSHCQ+ EMYKLLET+L+EVK LGYEP++ +EVIE+E+ +E V SST+ H
Sbjct: 625 EKVYSFKPNDKSHCQSLEMYKLLETVLNEVKALGYEPIEDVEVIEKEENEERVLSSTVLH 684

Query: 181 SERLAIAFGLLNLPKATQIRVVKNITLCRDCHNFIRFVSLLTGREIVIRDSKQLHKFSNG 240
           SE+LAIAFGLLNLP AT IRVVK+IT+CRDCHNFIRF+SLL GREIVIRDSKQLHKF NG
Sbjct: 685 SEKLAIAFGLLNLPTATPIRVVKSITMCRDCHNFIRFISLLKGREIVIRDSKQLHKFLNG 744

Query: 241 YCSCRGFGD 250
           YCSC G+GD
Sbjct: 745 YCSCGGYGD 753

[Close]

BLAST of Carg22528 vs. TAIR 10
Match: AT2G22070.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 221.5 bits (563), Expect = 7.7e-58
Identity = 98/244 (40.16%), Postives = 163/244 (66.80%), Query Frame = 0


Query: 6   KIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSELGFYA 65
           KI P + H+ACM+D++ R G ++EA + ++KM  EP+ + W  L++ CR H N +LG  A
Sbjct: 546 KIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVA 605

Query: 66  AEQLLKLRPKDTETYISLLNMYISAGRWKDVSTVRKLMKEEKLGKLKDWSWISIKEKVYS 125
           AE+LL L P+++  Y +L N+Y + G+W++ + +RK MK+ ++ K + +SWI +K KV+ 
Sbjct: 606 AERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHV 665

Query: 126 FKPNDKSHCQTAEMYKLLETLLDEVKPLGYEP--VQYMEVIEEEKGDETVFSSTIYHSER 185
           F   D +H +  E+Y  ++ + DE+K +GY P     +  +EEE  ++ +     +HSE+
Sbjct: 666 FGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQIL----RHHSEK 725

Query: 186 LAIAFGLLNLPKATQIRVVKNITLCRDCHNFIRFVSLLTGREIVIRDSKQLHKFSNGYCS 245
           LAIAFGL++ P  T +R++KN+ +C DCH  I+F+S L GREI++RD+ + H F +G+CS
Sbjct: 726 LAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCS 785

Query: 246 CRGF 248
           CR +
Sbjct: 786 CRDY 785

[Close]

BLAST of Carg22528 vs. TAIR 10
Match: AT4G14850.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 216.5 bits (550), Expect = 2.5e-56
Identity = 102/250 (40.80%), Postives = 158/250 (63.20%), Query Frame = 0


Query: 1   MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSE 60
           M+  Y IEP  +H++C++DM  R G VE A++ +KKM  +P   +W  L   CR HG  +
Sbjct: 439 MRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQ 498

Query: 61  LGFYAAEQLLKLRPKDTETYISLLNMYISAGRWKDVSTVRKLMKEEKLGKLKDWSWISIK 120
           LG  AAE L KL PKD+  ++ L N + +AGRW + +TVR+ +K   + K   +SWI++K
Sbjct: 499 LGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVK 558

Query: 121 EKVYSFKPNDKSHCQTAEMYKLLETLLDEVKPLGYEP---VQYMEVIEEEKGDETVFSST 180
            +V++F+  D+SH    E+   L  L +E++  GY+P   +   ++ EEEK  E      
Sbjct: 559 NQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAE-----V 618

Query: 181 IYHSERLAIAFGLLNLPKATQIRVVKNITLCRDCHNFIRFVSLLTGREIVIRDSKQLHKF 240
            +HSE+LA+AFGLL+LP +  IR+ KN+ +C DCH+F +FVS    REI++RD+ + H+F
Sbjct: 619 SHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRF 678

Query: 241 SNGYCSCRGF 248
            +G CSC+ +
Sbjct: 679 KDGICSCKDY 683

[Close]

BLAST of Carg22528 vs. TAIR 10
Match: AT4G16835.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 215.7 bits (548), Expect = 4.2e-56
Identity = 99/246 (40.24%), Postives = 164/246 (66.67%), Query Frame = 0


Query: 1   MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSE 60
           M + YK+EP  DH+ CM+D+  R G++EEA  +++ M F P+  ++  L+  CR H N E
Sbjct: 411 MVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVE 470

Query: 61  LGFYAAEQLLKLRPKDTETYISLLNMYISAGRWKDVSTVRKLMKEEKLGKLKDWSWISIK 120
           L  +AAE+LL+L  ++   Y+ L N+Y S  RW+DV+ VRK MKE  + K+  +SWI I+
Sbjct: 471 LAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIR 530

Query: 121 EKVYSFKPNDKSHCQTAEMYKLLETLLDEVKPLGYEP-VQY-MEVIEEEKGDETVFSSTI 180
            KV+ F+ +D+ H +   ++K L+ L  ++K  GY+P +++ +  +EEE+ ++ +    +
Sbjct: 531 NKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLL----L 590

Query: 181 YHSERLAIAFGLLNLPKATQIRVVKNITLCRDCHNFIRFVSLLTGREIVIRDSKQLHKFS 240
           +HSE+LA+AFG + LP+ +QI+V KN+ +C DCH  I+F+S +  REI++RD+ + H F 
Sbjct: 591 WHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFK 650

Query: 241 NGYCSC 245
           +G CSC
Sbjct: 651 DGSCSC 652

[Close]

BLAST of Carg22528 vs. TAIR 10
Match: AT3G49170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 209.5 bits (532), Expect = 3.0e-54
Identity = 95/249 (38.15%), Postives = 157/249 (63.05%), Query Frame = 0


Query: 1   MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSE 60
           M + +KI+P M+H+ACM+D+  R G + +AF+ +  M F+ + ++W   +  CR H N+E
Sbjct: 601 MYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTE 660

Query: 61  LGFYAAEQLLKLRPKDTETYISLLNMYISAGRWKDVSTVRKLMKEEKLGKLKDWSWISIK 120
           LG  AA ++L+L P +   YI L N+Y  AG+W++ + +R+ MKE  L K    SWI + 
Sbjct: 661 LGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVG 720

Query: 121 EKVYSFKPNDKSHCQTAEMYKLLETLLDEVKPLGYEPVQYMEVIE-EEKGDETVFSSTIY 180
           +K++ F   D +H    ++Y  L+ L+ E+K  GY P   + + + EE+ DE      +Y
Sbjct: 721 DKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLY 780

Query: 181 -HSERLAIAFGLLNLPKATQIRVVKNITLCRDCHNFIRFVSLLTGREIVIRDSKQLHKFS 240
            HSE++A+AFGL++  K+  +RV KN+ +C DCHN ++++S ++GREIV+RD  + H F 
Sbjct: 781 QHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFK 840

Query: 241 NGYCSCRGF 248
           +G CSC  +
Sbjct: 841 DGKCSCNDY 849

[Close]

BLAST of Carg22528 vs. TAIR 10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 208.8 bits (530), Expect = 5.2e-54
Identity = 100/250 (40.00%), Postives = 156/250 (62.40%), Query Frame = 0


Query: 1   MQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSE 60
           M+++YKIEP ++HF CM+D+  R G+V++A++ +K M  +PN +IW  L+  C  HG+S+
Sbjct: 350 MREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSD 409

Query: 61  LGFYAAEQLLKLRPKDTETYISLLNMYISAGRWKDVSTVRKLMKEEKLGKLKDWSWISIK 120
           L  +A  Q+L+L P  +  Y+ L NMY S  RW DV  +RK M  + + K+   S + + 
Sbjct: 410 LAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVG 469

Query: 121 EKVYSFKPNDKSHCQTAEMYKLLETLLDEVKPLGYEPV---QYMEVIEEEKGDETVFSST 180
            +V+ F   DKSH Q+  +Y  L+ +   ++  GY P     Y++V EEEK      ++ 
Sbjct: 470 NRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKE-----NAV 529

Query: 181 IYHSERLAIAFGLLNLPKATQIRVVKNITLCRDCHNFIRFVSLLTGREIVIRDSKQLHKF 240
           +YHSE++AIAF L++ P+ + I VVKN+ +C DCH  I+ VS +  REIV+RD  + H F
Sbjct: 530 VYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHF 589

Query: 241 SNGYCSCRGF 248
            NG CSC+ +
Sbjct: 590 KNGSCSCQDY 594

The following BLAST results are available for this feature:

BLAST of Carg22528 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020235.1	8.1e-142	100.00	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
XP_023538358.1	6.8e-141	98.80	pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita pepo subsp...	[more]
XP_023001915.1	4.2e-138	96.80	pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita maxima] >X...	[more]
KAG6585316.1	2.9e-131	91.20	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
KAG7020234.1	2.9e-131	91.20	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]

BLAST of Carg22528 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHZ8	1.1e-56	40.16	Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana OX...	[more]
Q0WSH6	3.5e-55	40.80	Pentatricopeptide repeat-containing protein At4g14850 OS=Arabidopsis thaliana OX...	[more]
Q9M4P3	6.0e-55	40.24	Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidop...	[more]
Q5G1T1	4.3e-53	38.15	Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidop...	[more]
A8MQA3	7.3e-53	40.00	Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX...	[more]

BLAST of Carg22528 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KJZ5	2.0e-138	96.80	pentatricopeptide repeat-containing protein At4g21065-like OS=Cucurbita maxima O...	[more]
A0A6J1GH28	3.1e-131	91.60	putative pentatricopeptide repeat-containing protein At5g52630 OS=Cucurbita mosc...	[more]
A0A6J1KHZ4	5.3e-131	90.80	putative pentatricopeptide repeat-containing protein At5g52630 OS=Cucurbita maxi...	[more]
A0A6J1BQL4	7.7e-122	86.40	putative pentatricopeptide repeat-containing protein At5g52630 OS=Momordica char...	[more]
A0A0A0LRW6	4.2e-120	83.53	DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G3721...	[more]

BLAST of Carg22528 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G22070.1	7.7e-58	40.16	pentatricopeptide (PPR) repeat-containing protein	[more]
AT4G14850.1	2.5e-56	40.80	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G16835.1	4.2e-56	40.24	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G49170.1	3.0e-54	38.15	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G21065.1	5.2e-54	40.00	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032867	DYW domain	PFAM	PF14432	DYW_deaminase	coord: 113..237 e-value: 1.1E-28 score: 99.6
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..172 e-value: 1.7E-17 score: 65.8
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 14..37 e-value: 1.1E-4 score: 20.2
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 16..37 e-value: 5.2E-4 score: 20.1 coord: 79..107 e-value: 0.048 score: 13.9
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 76..110 score: 8.61564
None	No IPR available	PANTHER	PTHR47926	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 1..236
None	No IPR available	PANTHER	PTHR47926:SF186	OS11G0482400 PROTEIN	coord: 1..236

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22528-RA	Carg22528-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016573	histone acetylation
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
cellular_component	GO:0000124	SAGA complex
cellular_component	GO:0005669	transcription factor TFIID complex
molecular_function	GO:1990841	promoter-specific chromatin binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016251	RNA polymerase II general transcription initiation factor activity
molecular_function	GO:0008270	zinc ion binding