Carg22497 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg22497
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr12: 1250648 .. 1252452 (+)
RNA-Seq ExpressionCarg22497
SyntenyCarg22497
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAAAACACATGATTGGTATAGAGATTCACGGGTGGGGCCTGGAATCCAAGGGTTGAACGGTCAAGGTAGATATGATTAGTGTTAATGCAAAACATGGGATTCCAGCCTTCCCTTTATTGGTGAGAAAATATTATTTAAAATATATCAAAATTCTTAAATTCTTTTTTCAAATTATATATAATAAATAAACTAATTAAAAATATTTAATATTTTAAGATACATTAGACATAGAATTAAAATATAAAAATTTTATTAGGAGATCCCACGTCGGTCGGGTGGGGAACGGAATATTTTTTTTTATAAGAGTGTGAAAACCTCTACCCATTAGACACGTTTTAAAAATTTACTAGTCGTGGGTTTGGATTGTTACAAATGGTATTAGAGTCGGTAGATTGAGGGGTCCGACATAAATTAGAGAAGGGCTAGTCCCGGGAGAGGGGTGAATAGAGGGGTAAATTTGTAATTTAACATTTTTCTATTAAAAAGAAAAATGTAGCTAATTTATAGAGGTTCCACATTGCACACTTATACACAGCGTGCGAGCGTGGCGCACGTACGAGCGGGGCCTGTTTTTTGATTATTTTGATTTAATTGGAGGGAATTTATTTGTGAAAATGAATTCTATATATAATTACAGGATCCGTGCAATTCACAAGTTTAGACTTTGACCGTATTCATTGTTTCTTCTTCCTCTTTCTCCGTGACGCTCTTTCAGTACTCTGTACGATCTGTGAAATCTCTCAGCTCAGACACCGTCGTCCTTCTCTCTTTCGACGCTTCTTCAGGGGATTTCCTTTTCCTTCTCCTTTCTGTAAGTGATTTTCTCTCTACCTTTCTTTTTCTTTGTTGTTTTTTTCTTTCCTCGCCGGCTTTGTACTGTAATCTGCCTTCTTCAACTCTGTTGTTTTGAGATTTCGCATTGGATTTCATCTCTGGTTGCCTACTTCTCGAACTGGAAACGTGATTTTCTTATCTTCTTGTTCTTGTTCTTGTTCTTTTTCATCTGTTACTGGTTCATGAATCTTCTCTGCTGCTGTACCTGCTTCTACACTTTTTTCTCTGAATAACGCCTCTCTGGTTTTTGAAAGGTCAGGTTGACTTTAATTGCTATACGGTCACATGCGTCCTCTGTTGTTCTGATTTGGTTTTGTGATGTTCGTGTTTTGCTTTTGTTCATCCCATATGTATGGGGCCACTTGGATTCTTTTTTTTTTTTTTTTTTTTTTGAGATAATCGTCGGAGTTGCATTCGTTTCAATTATGGAGATGATGTGATATTCTGTTTCTCGTGTGGATAATCTGGCGTTTTTTTTCTCTGTTTTTTGTGTTTAGATATGACATGAATCTCATTTCATTCAGTAGGAGAAGTGTTAATAATGGTAATTGAACTGAAATTTGCAGGAGTTTTGAGTTTTCGTTCACGGAGTGAATTTTTGGAGATCTGTTTGTGGATAAGGGTGGAACAGCATGCGGTGGTGTTTTAGTCTATCAGTTGATGTTTTTCGCAAAGTAATTTCGTTGAATTTATACTGTAAAGTTATTCTGTAATTTTTCTCCGATCGAAGCGAACGATCTTCCTTTCTCCCTCTTCATATTCTTCAACAGCTATCATCCATGGGATCCAGTTTTTTCGTCGTTGTTCCTTGTTATGTCCTCCAGATTAGTTGAAATTTTTGATCTGTTTCTCTTGACCTTCGTTCTCTTTGAGAAATTAGGTTTAGTTTTCCTACTTCTATTTTCAGTCTTCTTTTATTCAAGTGCGCGCGAAGAAGGTGCTTTACTGCTTTGTTTAGTTAGCTGA

mRNA sequence

ATGGGAAAAACACATGATTGGTATAGAGATTCACGGGTGGGGCCTGGAATCCAAGGGTTGAACGGTCAAGGATCCGTGCAATTCACAAGTTTAGACTTTGACCGTATTCATTGTTTCTTCTTCCTCTTTCTCCGTGACGCTCTTTCAATAATCGTCGGAGTTGCATTCGTTTCAATTATGGAGATGATATATGACATGAATCTCATTTCATTCAGTAGGAGAAGTGTTAATAATGTCTTCTTTTATTCAAGTGCGCGCGAAGAAGGTGCTTTACTGCTTTGTTTAGTTAGCTGA

Coding sequence (CDS)

ATGGGAAAAACACATGATTGGTATAGAGATTCACGGGTGGGGCCTGGAATCCAAGGGTTGAACGGTCAAGGATCCGTGCAATTCACAAGTTTAGACTTTGACCGTATTCATTGTTTCTTCTTCCTCTTTCTCCGTGACGCTCTTTCAATAATCGTCGGAGTTGCATTCGTTTCAATTATGGAGATGATATATGACATGAATCTCATTTCATTCAGTAGGAGAAGTGTTAATAATGTCTTCTTTTATTCAAGTGCGCGCGAAGAAGGTGCTTTACTGCTTTGTTTAGTTAGCTGA

Protein sequence

MGKTHDWYRDSRVGPGIQGLNGQGSVQFTSLDFDRIHCFFFLFLRDALSIIVGVAFVSIMEMIYDMNLISFSRRSVNNVFFYSSAREEGALLLCLVS
Homology
[Close]
BLAST of Carg22497 vs. NCBI nr
Match: KAG7020266.1 (hypothetical protein SDJN02_16949, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 195.3 bits (495), Expect = 2.5e-46
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MGKTHDWYRDSRVGPGIQGLNGQGSVQFTSLDFDRIHCFFFLFLRDALSIIVGVAFVSIM 60
          MGKTHDWYRDSRVGPGIQGLNGQGSVQFTSLDFDRIHCFFFLFLRDALSIIVGVAFVSIM
Sbjct: 1  MGKTHDWYRDSRVGPGIQGLNGQGSVQFTSLDFDRIHCFFFLFLRDALSIIVGVAFVSIM 60

Query: 61 EMIYDMNLISFSRRSVNNVFFYSSAREEGALLLCLVS 98
          EMIYDMNLISFSRRSVNNVFFYSSAREEGALLLCLVS
Sbjct: 61 EMIYDMNLISFSRRSVNNVFFYSSAREEGALLLCLVS 97

The following BLAST results are available for this feature:
BLAST of Carg22497 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7020266.12.5e-46100.00hypothetical protein SDJN02_16949, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg22497 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg22497 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg22497 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22497-RACarg22497-RAmRNA