
Carg22471 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAGGTTGGAAATTGGTCTAGATGGTTAACCAACGTGATCGGTATCGATGCCGATGACTCTTCGGTAGATCAACATGGCAGTGACGATGACATTAGACCAGATGCAGATGGAAGATCCAAATCATTTCCTCTACTTAATTCATTGAGTGATCTCCTGATGCTCCCAAAAGACATGCTTACTGATCGCTCAGTTAGAGAAGAGGTCTTTTTCAACCCCAAGCGTTTACCATTTCTTAACTGAATGCACTCTACTAGTTTATATGACATTATTAGTGTACTTATTCAACCATATGTTTTGTGTTCTCTAGATCTGCCCGTCGATTAGTCTTCCGTTGATTACGAGAATACTTTGTAATTTCACTCCAGATGAGTTCTGCCCCGATCCCGTTTCGGGAACTGTCTTGGAGTCGCTTAATGCTGCGGTAAGATGATCTTTTCTTGTTCCAAGCCTTTTTGTTAGGATGTCTCAACTAGAGAACTCCTAGATAGCTTTGAGCTGTTGGGTTTTGATGCGTCGTTCTTTTGGCCAAACAGAGTATAGTCGAACGGAGAGTGTCGGGTTACTCGGGGAGGAACTTCCCCTACACAGCTGCCCCAGTTGTCTATATTTCTCCTTCAACATCTGATGTGGCAGAAAAAGTTGCAGAGGCTGGAGGAAAATCCCACTTGGAAAGGAACATCTCCTCTATTCAGAGGAAGGGATATACAAGCGATGAAGAACTTGAGGAACTGGATTCTCCTCTCTCGACGATTGTCGATAAACCGACGACTTTGTCCCCGACATACAATGCTGATGGTAATGGCTGCCATGAAGACGATACGACGTTCAACATGAGGTACAAACTCCTACGAGAAGTATGGTCGGTATGAAGAATGCTCAAACAAGTCTTGTATGTATAATATTTATAACATATATAGATTGTTTCTTTATGAAAGATTGTTGAATTTGAATGAGGAAAGTAGAAATAACATAGAGGAAAGTGAGTCAATTTAGATGATCATAGAGATTATGTATAAGGTTATCTCAGCCAAATCTTCTTTGTATATTGCATTTGAGTTTTAGTTATTATATATAAACCATGAACACATTTTCATTCCATAACCACGAACACATTTTCGTTATATTCCATAACGCCCATTCAATTTTAGTGATCCGAGCAACTCGAATAGAGTTTACAACTTAATTTTTTATTTTTGGGTTAGATTGTCGAGTTATTTTTCTAAGATTATTTTCATAAAATTCTATTTATCTACCCCACCAATAAAGTTACAAATATTAAATATTCTTAATTTTTTTAAAAATATTCTTAATATTTTCCGTTATTTATTTTGTACCCTAAAATATTTTGTTTTTGCCAAGCTAAAAAATGATGTCAGGCCTCTAATAAACCAGAGACACTATTTAAGTTCACACTAACTGGTCAATTTTGGATCCAATTCGAAATTTTCCTTGAGAGGTATAAGGAAGGAATTATAATGTAATAATATTGATTTATACAGATACAGAAGAAAAGATTCTCTATTGATTCAAACATTGTACCGTGA ATGCAGGTTGGAAATTGGTCTAGATGGTTAACCAACGTGATCGGTATCGATGCCGATGACTCTTCGGTAGATCAACATGGCAGTGACGATGACATTAGACCAGATGCAGATGGAAGATCCAAATCATTTCCTCTACTTAATTCATTGAGTGATCTCCTGATGCTCCCAAAAGACATGCTTACTGATCGCTCAGTTAGAGAAGAGATCTGCCCGTCGATTAGTCTTCCGTTGATTACGAGAATACTTTGTAATTTCACTCCAGATGAGTTCTGCCCCGATCCCGTTTCGGGAACTGTCTTGGAGTCGCTTAATGCTGCGAGTATAGTCGAACGGAGAGTGTCGGGTTACTCGGGGAGGAACTTCCCCTACACAGCTGCCCCAGTTGTCTATATTTCTCCTTCAACATCTGATGTGGCAGAAAAAGTTGCAGAGGCTGGAGGAAAATCCCACTTGGAAAGGAACATCTCCTCTATTCAGAGGAAGGGATATACAAGCGATGAAGAACTTGAGGAACTGGATTCTCCTCTCTCGACGATTGTCGATAAACCGACGACTTTGTCCCCGACATACAATGCTGATGGTAATGGCTGCCATGAAGACGATACGACGTTCAACATGAGGTACAAACTCCTACGAGAAGTATGGTCGATACAGAAGAAAAGATTCTCTATTGATTCAAACATTGTACCGTGA ATGCAGGTTGGAAATTGGTCTAGATGGTTAACCAACGTGATCGGTATCGATGCCGATGACTCTTCGGTAGATCAACATGGCAGTGACGATGACATTAGACCAGATGCAGATGGAAGATCCAAATCATTTCCTCTACTTAATTCATTGAGTGATCTCCTGATGCTCCCAAAAGACATGCTTACTGATCGCTCAGTTAGAGAAGAGATCTGCCCGTCGATTAGTCTTCCGTTGATTACGAGAATACTTTGTAATTTCACTCCAGATGAGTTCTGCCCCGATCCCGTTTCGGGAACTGTCTTGGAGTCGCTTAATGCTGCGAGTATAGTCGAACGGAGAGTGTCGGGTTACTCGGGGAGGAACTTCCCCTACACAGCTGCCCCAGTTGTCTATATTTCTCCTTCAACATCTGATGTGGCAGAAAAAGTTGCAGAGGCTGGAGGAAAATCCCACTTGGAAAGGAACATCTCCTCTATTCAGAGGAAGGGATATACAAGCGATGAAGAACTTGAGGAACTGGATTCTCCTCTCTCGACGATTGTCGATAAACCGACGACTTTGTCCCCGACATACAATGCTGATGGTAATGGCTGCCATGAAGACGATACGACGTTCAACATGAGGTACAAACTCCTACGAGAAGTATGGTCGATACAGAAGAAAAGATTCTCTATTGATTCAAACATTGTACCGTGA MQVGNWSRWLTNVIGIDADDSSVDQHGSDDDIRPDADGRSKSFPLLNSLSDLLMLPKDMLTDRSVREEICPSISLPLITRILCNFTPDEFCPDPVSGTVLESLNAASIVERRVSGYSGRNFPYTAAPVVYISPSTSDVAEKVAEAGGKSHLERNISSIQRKGYTSDEELEELDSPLSTIVDKPTTLSPTYNADGNGCHEDDTTFNMRYKLLREVWSIQKKRFSIDSNIVP Homology
BLAST of Carg22471 vs. NCBI nr
Match: KAG7033544.1 (hypothetical protein SDJN02_03266, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 463.4 bits (1191), Expect = 1.2e-126 Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0
BLAST of Carg22471 vs. NCBI nr
Match: KAG6603242.1 (hypothetical protein SDJN03_03851, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 433.3 bits (1113), Expect = 1.3e-117 Identity = 214/215 (99.53%), Postives = 215/215 (100.00%), Query Frame = 0
BLAST of Carg22471 vs. NCBI nr
Match: XP_022928667.1 (uncharacterized protein LOC111435516 [Cucurbita moschata] >XP_022928668.1 uncharacterized protein LOC111435516 [Cucurbita moschata] >XP_022928669.1 uncharacterized protein LOC111435516 [Cucurbita moschata] >XP_022928670.1 uncharacterized protein LOC111435516 [Cucurbita moschata] >XP_022928671.1 uncharacterized protein LOC111435516 [Cucurbita moschata]) HSP 1 Score: 429.5 bits (1103), Expect = 1.8e-116 Identity = 212/215 (98.60%), Postives = 213/215 (99.07%), Query Frame = 0
BLAST of Carg22471 vs. NCBI nr
Match: XP_022967725.1 (uncharacterized protein LOC111467165 [Cucurbita maxima] >XP_022967726.1 uncharacterized protein LOC111467165 [Cucurbita maxima] >XP_022967727.1 uncharacterized protein LOC111467165 [Cucurbita maxima] >XP_022967728.1 uncharacterized protein LOC111467165 [Cucurbita maxima]) HSP 1 Score: 421.8 bits (1083), Expect = 3.8e-114 Identity = 208/215 (96.74%), Postives = 212/215 (98.60%), Query Frame = 0
BLAST of Carg22471 vs. NCBI nr
Match: XP_023543544.1 (uncharacterized protein LOC111803398 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 419.9 bits (1078), Expect = 1.5e-113 Identity = 207/215 (96.28%), Postives = 210/215 (97.67%), Query Frame = 0
BLAST of Carg22471 vs. ExPASy TrEMBL
Match: A0A6J1EKK4 (uncharacterized protein LOC111435516 OS=Cucurbita moschata OX=3662 GN=LOC111435516 PE=3 SV=1) HSP 1 Score: 429.5 bits (1103), Expect = 8.9e-117 Identity = 212/215 (98.60%), Postives = 213/215 (99.07%), Query Frame = 0
BLAST of Carg22471 vs. ExPASy TrEMBL
Match: A0A6J1HRL7 (uncharacterized protein LOC111467165 OS=Cucurbita maxima OX=3661 GN=LOC111467165 PE=3 SV=1) HSP 1 Score: 421.8 bits (1083), Expect = 1.9e-114 Identity = 208/215 (96.74%), Postives = 212/215 (98.60%), Query Frame = 0
BLAST of Carg22471 vs. ExPASy TrEMBL
Match: A0A0A0L2Q7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G572860 PE=3 SV=1) HSP 1 Score: 369.4 bits (947), Expect = 1.1e-98 Identity = 185/215 (86.05%), Postives = 199/215 (92.56%), Query Frame = 0
BLAST of Carg22471 vs. ExPASy TrEMBL
Match: A0A6J1HSY5 (uncharacterized protein LOC111465935 OS=Cucurbita maxima OX=3661 GN=LOC111465935 PE=3 SV=1) HSP 1 Score: 366.3 bits (939), Expect = 9.3e-98 Identity = 186/218 (85.32%), Postives = 200/218 (91.74%), Query Frame = 0
BLAST of Carg22471 vs. ExPASy TrEMBL
Match: A0A6J1EB09 (uncharacterized protein LOC111432417 OS=Cucurbita moschata OX=3662 GN=LOC111432417 PE=3 SV=1) HSP 1 Score: 366.3 bits (939), Expect = 9.3e-98 Identity = 187/218 (85.78%), Postives = 199/218 (91.28%), Query Frame = 0
BLAST of Carg22471 vs. TAIR 10
Match: AT2G42320.1 (nucleolar protein gar2-related ) HSP 1 Score: 225.7 bits (574), Expect = 3.8e-59 Identity = 130/215 (60.47%), Postives = 153/215 (71.16%), Query Frame = 0
BLAST of Carg22471 vs. TAIR 10
Match: AT2G42320.2 (nucleolar protein gar2-related ) HSP 1 Score: 225.7 bits (574), Expect = 3.8e-59 Identity = 130/215 (60.47%), Postives = 153/215 (71.16%), Query Frame = 0
BLAST of Carg22471 vs. TAIR 10
Match: AT3G57780.1 (BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 3163 Blast hits to 2460 proteins in 357 species: Archae - 16; Bacteria - 291; Metazoa - 841; Fungi - 335; Plants - 248; Viruses - 72; Other Eukaryotes - 1360 (source: NCBI BLink). ) HSP 1 Score: 204.5 bits (519), Expect = 9.0e-53 Identity = 120/220 (54.55%), Postives = 147/220 (66.82%), Query Frame = 0
BLAST of Carg22471 vs. TAIR 10
Match: AT3G01810.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 1327 Blast hits to 470 proteins in 132 species: Archae - 2; Bacteria - 131; Metazoa - 139; Fungi - 114; Plants - 114; Viruses - 0; Other Eukaryotes - 827 (source: NCBI BLink). ) HSP 1 Score: 159.5 bits (402), Expect = 3.3e-39 Identity = 95/216 (43.98%), Postives = 126/216 (58.33%), Query Frame = 0
BLAST of Carg22471 vs. TAIR 10
Match: AT3G01810.3 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2). ) HSP 1 Score: 159.5 bits (402), Expect = 3.3e-39 Identity = 95/216 (43.98%), Postives = 126/216 (58.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|