Carg22471 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22471
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Nucleolar protein gar2-related protein
Location	Carg_Chr03: 1031346 .. 1032892 (-)
RNA-Seq Expression	Carg22471
Synteny	Carg22471

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGTTGGAAATTGGTCTAGATGGTTAACCAACGTGATCGGTATCGATGCCGATGACTCTTCGGTAGATCAACATGGCAGTGACGATGACATTAGACCAGATGCAGATGGAAGATCCAAATCATTTCCTCTACTTAATTCATTGAGTGATCTCCTGATGCTCCCAAAAGACATGCTTACTGATCGCTCAGTTAGAGAAGAGGTCTTTTTCAACCCCAAGCGTTTACCATTTCTTAACTGAATGCACTCTACTAGTTTATATGACATTATTAGTGTACTTATTCAACCATATGTTTTGTGTTCTCTAGATCTGCCCGTCGATTAGTCTTCCGTTGATTACGAGAATACTTTGTAATTTCACTCCAGATGAGTTCTGCCCCGATCCCGTTTCGGGAACTGTCTTGGAGTCGCTTAATGCTGCGGTAAGATGATCTTTTCTTGTTCCAAGCCTTTTTGTTAGGATGTCTCAACTAGAGAACTCCTAGATAGCTTTGAGCTGTTGGGTTTTGATGCGTCGTTCTTTTGGCCAAACAGAGTATAGTCGAACGGAGAGTGTCGGGTTACTCGGGGAGGAACTTCCCCTACACAGCTGCCCCAGTTGTCTATATTTCTCCTTCAACATCTGATGTGGCAGAAAAAGTTGCAGAGGCTGGAGGAAAATCCCACTTGGAAAGGAACATCTCCTCTATTCAGAGGAAGGGATATACAAGCGATGAAGAACTTGAGGAACTGGATTCTCCTCTCTCGACGATTGTCGATAAACCGACGACTTTGTCCCCGACATACAATGCTGATGGTAATGGCTGCCATGAAGACGATACGACGTTCAACATGAGGTACAAACTCCTACGAGAAGTATGGTCGGTATGAAGAATGCTCAAACAAGTCTTGTATGTATAATATTTATAACATATATAGATTGTTTCTTTATGAAAGATTGTTGAATTTGAATGAGGAAAGTAGAAATAACATAGAGGAAAGTGAGTCAATTTAGATGATCATAGAGATTATGTATAAGGTTATCTCAGCCAAATCTTCTTTGTATATTGCATTTGAGTTTTAGTTATTATATATAAACCATGAACACATTTTCATTCCATAACCACGAACACATTTTCGTTATATTCCATAACGCCCATTCAATTTTAGTGATCCGAGCAACTCGAATAGAGTTTACAACTTAATTTTTTATTTTTGGGTTAGATTGTCGAGTTATTTTTCTAAGATTATTTTCATAAAATTCTATTTATCTACCCCACCAATAAAGTTACAAATATTAAATATTCTTAATTTTTTTAAAAATATTCTTAATATTTTCCGTTATTTATTTTGTACCCTAAAATATTTTGTTTTTGCCAAGCTAAAAAATGATGTCAGGCCTCTAATAAACCAGAGACACTATTTAAGTTCACACTAACTGGTCAATTTTGGATCCAATTCGAAATTTTCCTTGAGAGGTATAAGGAAGGAATTATAATGTAATAATATTGATTTATACAGATACAGAAGAAAAGATTCTCTATTGATTCAAACATTGTACCGTGA

mRNA sequence

ATGCAGGTTGGAAATTGGTCTAGATGGTTAACCAACGTGATCGGTATCGATGCCGATGACTCTTCGGTAGATCAACATGGCAGTGACGATGACATTAGACCAGATGCAGATGGAAGATCCAAATCATTTCCTCTACTTAATTCATTGAGTGATCTCCTGATGCTCCCAAAAGACATGCTTACTGATCGCTCAGTTAGAGAAGAGATCTGCCCGTCGATTAGTCTTCCGTTGATTACGAGAATACTTTGTAATTTCACTCCAGATGAGTTCTGCCCCGATCCCGTTTCGGGAACTGTCTTGGAGTCGCTTAATGCTGCGAGTATAGTCGAACGGAGAGTGTCGGGTTACTCGGGGAGGAACTTCCCCTACACAGCTGCCCCAGTTGTCTATATTTCTCCTTCAACATCTGATGTGGCAGAAAAAGTTGCAGAGGCTGGAGGAAAATCCCACTTGGAAAGGAACATCTCCTCTATTCAGAGGAAGGGATATACAAGCGATGAAGAACTTGAGGAACTGGATTCTCCTCTCTCGACGATTGTCGATAAACCGACGACTTTGTCCCCGACATACAATGCTGATGGTAATGGCTGCCATGAAGACGATACGACGTTCAACATGAGGTACAAACTCCTACGAGAAGTATGGTCGATACAGAAGAAAAGATTCTCTATTGATTCAAACATTGTACCGTGA

Coding sequence (CDS)

ATGCAGGTTGGAAATTGGTCTAGATGGTTAACCAACGTGATCGGTATCGATGCCGATGACTCTTCGGTAGATCAACATGGCAGTGACGATGACATTAGACCAGATGCAGATGGAAGATCCAAATCATTTCCTCTACTTAATTCATTGAGTGATCTCCTGATGCTCCCAAAAGACATGCTTACTGATCGCTCAGTTAGAGAAGAGATCTGCCCGTCGATTAGTCTTCCGTTGATTACGAGAATACTTTGTAATTTCACTCCAGATGAGTTCTGCCCCGATCCCGTTTCGGGAACTGTCTTGGAGTCGCTTAATGCTGCGAGTATAGTCGAACGGAGAGTGTCGGGTTACTCGGGGAGGAACTTCCCCTACACAGCTGCCCCAGTTGTCTATATTTCTCCTTCAACATCTGATGTGGCAGAAAAAGTTGCAGAGGCTGGAGGAAAATCCCACTTGGAAAGGAACATCTCCTCTATTCAGAGGAAGGGATATACAAGCGATGAAGAACTTGAGGAACTGGATTCTCCTCTCTCGACGATTGTCGATAAACCGACGACTTTGTCCCCGACATACAATGCTGATGGTAATGGCTGCCATGAAGACGATACGACGTTCAACATGAGGTACAAACTCCTACGAGAAGTATGGTCGATACAGAAGAAAAGATTCTCTATTGATTCAAACATTGTACCGTGA

Protein sequence

MQVGNWSRWLTNVIGIDADDSSVDQHGSDDDIRPDADGRSKSFPLLNSLSDLLMLPKDMLTDRSVREEICPSISLPLITRILCNFTPDEFCPDPVSGTVLESLNAASIVERRVSGYSGRNFPYTAAPVVYISPSTSDVAEKVAEAGGKSHLERNISSIQRKGYTSDEELEELDSPLSTIVDKPTTLSPTYNADGNGCHEDDTTFNMRYKLLREVWSIQKKRFSIDSNIVP

Homology

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BLAST of Carg22471 vs. NCBI nr
Match: KAG7033544.1 (hypothetical protein SDJN02_03266, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 463.4 bits (1191), Expect = 1.2e-126
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0


Query: 1   MQVGNWSRWLTNVIGIDADDSSVDQHGSDDDIRPDADGRSKSFPLLNSLSDLLMLPKDML 60
           MQVGNWSRWLTNVIGIDADDSSVDQHGSDDDIRPDADGRSKSFPLLNSLSDLLMLPKDML
Sbjct: 1   MQVGNWSRWLTNVIGIDADDSSVDQHGSDDDIRPDADGRSKSFPLLNSLSDLLMLPKDML 60

Query: 61  TDRSVREEICPSISLPLITRILCNFTPDEFCPDPVSGTVLESLNAASIVERRVSGYSGRN 120
           TDRSVREEICPSISLPLITRILCNFTPDEFCPDPVSGTVLESLNAASIVERRVSGYSGRN
Sbjct: 61  TDRSVREEICPSISLPLITRILCNFTPDEFCPDPVSGTVLESLNAASIVERRVSGYSGRN 120

Query: 121 FPYTAAPVVYISPSTSDVAEKVAEAGGKSHLERNISSIQRKGYTSDEELEELDSPLSTIV 180
           FPYTAAPVVYISPSTSDVAEKVAEAGGKSHLERNISSIQRKGYTSDEELEELDSPLSTIV
Sbjct: 121 FPYTAAPVVYISPSTSDVAEKVAEAGGKSHLERNISSIQRKGYTSDEELEELDSPLSTIV 180

Query: 181 DKPTTLSPTYNADGNGCHEDDTTFNMRYKLLREVWSIQKKRFSIDSNIVP 231
           DKPTTLSPTYNADGNGCHEDDTTFNMRYKLLREVWSIQKKRFSIDSNIVP
Sbjct: 181 DKPTTLSPTYNADGNGCHEDDTTFNMRYKLLREVWSIQKKRFSIDSNIVP 230

[Close]

BLAST of Carg22471 vs. NCBI nr
Match: KAG6603242.1 (hypothetical protein SDJN03_03851, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 433.3 bits (1113), Expect = 1.3e-117
Identity = 214/215 (99.53%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 3   VGNWSRWLTNVIGIDADDSSVDQHGSDDDIRPDADGRSKSFPLLNSLSDLLMLPKDMLTD 62
           VGNWSRWLTNVIGIDADDSSVDQHGSDDDIRPDADGRSKSFPLLNSLSDLLMLPKDMLTD
Sbjct: 559 VGNWSRWLTNVIGIDADDSSVDQHGSDDDIRPDADGRSKSFPLLNSLSDLLMLPKDMLTD 618

Query: 63  RSVREEICPSISLPLITRILCNFTPDEFCPDPVSGTVLESLNAASIVERRVSGYSGRNFP 122
           RSVREEICPSISLPLITRILCNFTPDEFCPDPVSGTVLESLNAASIVERRVSGYSGRNFP
Sbjct: 619 RSVREEICPSISLPLITRILCNFTPDEFCPDPVSGTVLESLNAASIVERRVSGYSGRNFP 678

Query: 123 YTAAPVVYISPSTSDVAEKVAEAGGKSHLERNISSIQRKGYTSDEELEELDSPLSTIVDK 182
           YTAAPVVYISPSTSDVAEKVAEAGGKSHLERNISSIQRKGYTSDEELEELDSPLSTIVDK
Sbjct: 679 YTAAPVVYISPSTSDVAEKVAEAGGKSHLERNISSIQRKGYTSDEELEELDSPLSTIVDK 738

Query: 183 PTTLSPTYNADGNGCHEDDTTFNMRYKLLREVWSI 218
           PTTLSPTYNADGNGCHEDDTTFNMRYKLLREVWS+
Sbjct: 739 PTTLSPTYNADGNGCHEDDTTFNMRYKLLREVWSV 773

[Close]

BLAST of Carg22471 vs. NCBI nr
Match: XP_022928667.1 (uncharacterized protein LOC111435516 [Cucurbita moschata] >XP_022928668.1 uncharacterized protein LOC111435516 [Cucurbita moschata] >XP_022928669.1 uncharacterized protein LOC111435516 [Cucurbita moschata] >XP_022928670.1 uncharacterized protein LOC111435516 [Cucurbita moschata] >XP_022928671.1 uncharacterized protein LOC111435516 [Cucurbita moschata])

HSP 1 Score: 429.5 bits (1103), Expect = 1.8e-116
Identity = 212/215 (98.60%), Postives = 213/215 (99.07%), Query Frame = 0


Query: 3   VGNWSRWLTNVIGIDADDSSVDQHGSDDDIRPDADGRSKSFPLLNSLSDLLMLPKDMLTD 62
           VGNWSRWLTNVIGIDADDSSVDQHGSDDDIRPDADGRSKSFPLLNSLSDLLMLPKDMLTD
Sbjct: 559 VGNWSRWLTNVIGIDADDSSVDQHGSDDDIRPDADGRSKSFPLLNSLSDLLMLPKDMLTD 618

Query: 63  RSVREEICPSISLPLITRILCNFTPDEFCPDPVSGTVLESLNAASIVERRVSGYSGRNFP 122
           RSVREEICPSISLPLITRILCNFTPDEFCPDPVSGTVLESLNAASIVERRVSGYSGRNFP
Sbjct: 619 RSVREEICPSISLPLITRILCNFTPDEFCPDPVSGTVLESLNAASIVERRVSGYSGRNFP 678

Query: 123 YTAAPVVYISPSTSDVAEKVAEAGGKSHLERNISSIQRKGYTSDEELEELDSPLSTIVDK 182
           YTAAPVVYISPSTSDV EKVAEAGGKSHLERNISSIQRKGYTSDEELEELDSPLSTIVDK
Sbjct: 679 YTAAPVVYISPSTSDVTEKVAEAGGKSHLERNISSIQRKGYTSDEELEELDSPLSTIVDK 738

Query: 183 PTTLSPTYNADGNGCHEDDTTFNMRYKLLREVWSI 218
           PTTLSP YNADGNGCHEDDTTFNMRYKLLREVWS+
Sbjct: 739 PTTLSPMYNADGNGCHEDDTTFNMRYKLLREVWSV 773

[Close]

BLAST of Carg22471 vs. NCBI nr
Match: XP_022967725.1 (uncharacterized protein LOC111467165 [Cucurbita maxima] >XP_022967726.1 uncharacterized protein LOC111467165 [Cucurbita maxima] >XP_022967727.1 uncharacterized protein LOC111467165 [Cucurbita maxima] >XP_022967728.1 uncharacterized protein LOC111467165 [Cucurbita maxima])

HSP 1 Score: 421.8 bits (1083), Expect = 3.8e-114
Identity = 208/215 (96.74%), Postives = 212/215 (98.60%), Query Frame = 0


Query: 3   VGNWSRWLTNVIGIDADDSSVDQHGSDDDIRPDADGRSKSFPLLNSLSDLLMLPKDMLTD 62
           VGNWSRWLTNVIGIDADDSSVDQHGSDDDI+PDADGRSKSFPLLNSLSDLLMLPKDMLTD
Sbjct: 559 VGNWSRWLTNVIGIDADDSSVDQHGSDDDIKPDADGRSKSFPLLNSLSDLLMLPKDMLTD 618

Query: 63  RSVREEICPSISLPLITRILCNFTPDEFCPDPVSGTVLESLNAASIVERRVSGYSGRNFP 122
           RSVREEICPSISLPLITRILCNFTPDEFCPDPV GTVLESLNAASIVERRVSGYSGRNFP
Sbjct: 619 RSVREEICPSISLPLITRILCNFTPDEFCPDPVPGTVLESLNAASIVERRVSGYSGRNFP 678

Query: 123 YTAAPVVYISPSTSDVAEKVAEAGGKSHLERNISSIQRKGYTSDEELEELDSPLSTIVDK 182
           Y AAPVVY+SPSTSDVAEKVAEAGGKS LERNISSIQRKGYTSDEELEELDSPLS+IVDK
Sbjct: 679 YIAAPVVYVSPSTSDVAEKVAEAGGKSLLERNISSIQRKGYTSDEELEELDSPLSSIVDK 738

Query: 183 PTTLSPTYNADGNGCHEDDTTFNMRYKLLREVWSI 218
           PTTLSPTYNADGNGCHEDDTTFNMRYKLLREVWS+
Sbjct: 739 PTTLSPTYNADGNGCHEDDTTFNMRYKLLREVWSV 773

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BLAST of Carg22471 vs. NCBI nr
Match: XP_023543544.1 (uncharacterized protein LOC111803398 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 419.9 bits (1078), Expect = 1.5e-113
Identity = 207/215 (96.28%), Postives = 210/215 (97.67%), Query Frame = 0


Query: 3   VGNWSRWLTNVIGIDADDSSVDQHGSDDDIRPDADGRSKSFPLLNSLSDLLMLPKDMLTD 62
           VGNWSRWLTNVIGIDADDSSVDQHGSDDDI+PDADGRSKSFPLLNSLSDLLMLPKDMLTD
Sbjct: 561 VGNWSRWLTNVIGIDADDSSVDQHGSDDDIKPDADGRSKSFPLLNSLSDLLMLPKDMLTD 620

Query: 63  RSVREEICPSISLPLITRILCNFTPDEFCPDPVSGTVLESLNAASIVERRVSGYSGRNFP 122
           RSVREEICPSISLPLITRILCNFTPDEFCPDPV GTVLE LNAASIVERRVSGYSG NFP
Sbjct: 621 RSVREEICPSISLPLITRILCNFTPDEFCPDPVPGTVLELLNAASIVERRVSGYSGMNFP 680

Query: 123 YTAAPVVYISPSTSDVAEKVAEAGGKSHLERNISSIQRKGYTSDEELEELDSPLSTIVDK 182
           Y AAPVVYISPSTSDVAEKVAEAGGKSHLERNIS IQRKGYTSDEELEELDSPLS+IVDK
Sbjct: 681 YIAAPVVYISPSTSDVAEKVAEAGGKSHLERNISCIQRKGYTSDEELEELDSPLSSIVDK 740

Query: 183 PTTLSPTYNADGNGCHEDDTTFNMRYKLLREVWSI 218
           PTTLSPTYNADGNGCHEDDTTFNMRYKLLREVWS+
Sbjct: 741 PTTLSPTYNADGNGCHEDDTTFNMRYKLLREVWSV 775

[Close]

BLAST of Carg22471 vs. ExPASy TrEMBL
Match: A0A6J1EKK4 (uncharacterized protein LOC111435516 OS=Cucurbita moschata OX=3662 GN=LOC111435516 PE=3 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 8.9e-117
Identity = 212/215 (98.60%), Postives = 213/215 (99.07%), Query Frame = 0


Query: 3   VGNWSRWLTNVIGIDADDSSVDQHGSDDDIRPDADGRSKSFPLLNSLSDLLMLPKDMLTD 62
           VGNWSRWLTNVIGIDADDSSVDQHGSDDDIRPDADGRSKSFPLLNSLSDLLMLPKDMLTD
Sbjct: 559 VGNWSRWLTNVIGIDADDSSVDQHGSDDDIRPDADGRSKSFPLLNSLSDLLMLPKDMLTD 618

Query: 63  RSVREEICPSISLPLITRILCNFTPDEFCPDPVSGTVLESLNAASIVERRVSGYSGRNFP 122
           RSVREEICPSISLPLITRILCNFTPDEFCPDPVSGTVLESLNAASIVERRVSGYSGRNFP
Sbjct: 619 RSVREEICPSISLPLITRILCNFTPDEFCPDPVSGTVLESLNAASIVERRVSGYSGRNFP 678

Query: 123 YTAAPVVYISPSTSDVAEKVAEAGGKSHLERNISSIQRKGYTSDEELEELDSPLSTIVDK 182
           YTAAPVVYISPSTSDV EKVAEAGGKSHLERNISSIQRKGYTSDEELEELDSPLSTIVDK
Sbjct: 679 YTAAPVVYISPSTSDVTEKVAEAGGKSHLERNISSIQRKGYTSDEELEELDSPLSTIVDK 738

Query: 183 PTTLSPTYNADGNGCHEDDTTFNMRYKLLREVWSI 218
           PTTLSP YNADGNGCHEDDTTFNMRYKLLREVWS+
Sbjct: 739 PTTLSPMYNADGNGCHEDDTTFNMRYKLLREVWSV 773

[Close]

BLAST of Carg22471 vs. ExPASy TrEMBL
Match: A0A6J1HRL7 (uncharacterized protein LOC111467165 OS=Cucurbita maxima OX=3661 GN=LOC111467165 PE=3 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 1.9e-114
Identity = 208/215 (96.74%), Postives = 212/215 (98.60%), Query Frame = 0


Query: 3   VGNWSRWLTNVIGIDADDSSVDQHGSDDDIRPDADGRSKSFPLLNSLSDLLMLPKDMLTD 62
           VGNWSRWLTNVIGIDADDSSVDQHGSDDDI+PDADGRSKSFPLLNSLSDLLMLPKDMLTD
Sbjct: 559 VGNWSRWLTNVIGIDADDSSVDQHGSDDDIKPDADGRSKSFPLLNSLSDLLMLPKDMLTD 618

Query: 63  RSVREEICPSISLPLITRILCNFTPDEFCPDPVSGTVLESLNAASIVERRVSGYSGRNFP 122
           RSVREEICPSISLPLITRILCNFTPDEFCPDPV GTVLESLNAASIVERRVSGYSGRNFP
Sbjct: 619 RSVREEICPSISLPLITRILCNFTPDEFCPDPVPGTVLESLNAASIVERRVSGYSGRNFP 678

Query: 123 YTAAPVVYISPSTSDVAEKVAEAGGKSHLERNISSIQRKGYTSDEELEELDSPLSTIVDK 182
           Y AAPVVY+SPSTSDVAEKVAEAGGKS LERNISSIQRKGYTSDEELEELDSPLS+IVDK
Sbjct: 679 YIAAPVVYVSPSTSDVAEKVAEAGGKSLLERNISSIQRKGYTSDEELEELDSPLSSIVDK 738

Query: 183 PTTLSPTYNADGNGCHEDDTTFNMRYKLLREVWSI 218
           PTTLSPTYNADGNGCHEDDTTFNMRYKLLREVWS+
Sbjct: 739 PTTLSPTYNADGNGCHEDDTTFNMRYKLLREVWSV 773

[Close]

BLAST of Carg22471 vs. ExPASy TrEMBL
Match: A0A0A0L2Q7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G572860 PE=3 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.1e-98
Identity = 185/215 (86.05%), Postives = 199/215 (92.56%), Query Frame = 0


Query: 3   VGNWSRWLTNVIGIDADDSSVDQHGSDDDIRPDADGRSKSFPLLNSLSDLLMLPKDMLTD 62
           VGNWSRWLT+++GIDADDSSVDQHGSD DI+ D DGR +SFPLLNSLSDLLMLPKDMLTD
Sbjct: 582 VGNWSRWLTDMVGIDADDSSVDQHGSDYDIKSDKDGRPQSFPLLNSLSDLLMLPKDMLTD 641

Query: 63  RSVREEICPSISLPLITRILCNFTPDEFCPDPVSGTVLESLNAASIVERRVSGYSGRNFP 122
           RS+R+E+CP ISLPLITRILCNFTPDEFCPDPV GTVLESLNA SI E+RVSGYSGRNFP
Sbjct: 642 RSIRKEVCPLISLPLITRILCNFTPDEFCPDPVPGTVLESLNAESIGEQRVSGYSGRNFP 701

Query: 123 YTAAPVVYISPSTSDVAEKVAEAGGKSHLERNISSIQRKGYTSDEELEELDSPLSTIVDK 182
           YTAAPV YISPSTSDVAEKVAEAGGKSHLERNIS+IQRKGYTSDEELEEL+SPL +IVDK
Sbjct: 702 YTAAPVFYISPSTSDVAEKVAEAGGKSHLERNISTIQRKGYTSDEELEELNSPLLSIVDK 761

Query: 183 PTTLSPTYNADGNGCHEDDTTFNMRYKLLREVWSI 218
            +TLS TYNA GNG HED TTFNMRYKLLRE WS+
Sbjct: 762 -STLSLTYNALGNGEHEDGTTFNMRYKLLREAWSV 795

[Close]

BLAST of Carg22471 vs. ExPASy TrEMBL
Match: A0A6J1HSY5 (uncharacterized protein LOC111465935 OS=Cucurbita maxima OX=3661 GN=LOC111465935 PE=3 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 9.3e-98
Identity = 186/218 (85.32%), Postives = 200/218 (91.74%), Query Frame = 0


Query: 3   VGNWSRWLTNVIGIDADDSSVDQHGSDDDIRPDADGRSKSFPLLNSLSDLLMLPKDMLTD 62
           VGNWSRWLT+++GIDADD+SVDQHGSDDDIRPD DGR +SFPLLNSLSDLLMLPKDMLTD
Sbjct: 582 VGNWSRWLTDMVGIDADDASVDQHGSDDDIRPDVDGRPQSFPLLNSLSDLLMLPKDMLTD 641

Query: 63  RSVREEICPSISLPLITRILCNFTPDEFCPDPVSGTVLESLNAASIVERRVSGYSGRNFP 122
           RS+REE+CPSISLPLITRILCNFTPDEFCPDPV GTVLE LNA +IVERR+SGYSGR+FP
Sbjct: 642 RSIREEVCPSISLPLITRILCNFTPDEFCPDPVPGTVLELLNAENIVERRLSGYSGRSFP 701

Query: 123 YTAAPVVYISPSTSDVAEKVAEA-GGKSHLERNISSIQRKGYTSDEELEELDSPLSTIVD 182
           Y AAPVVYISPSTSDVAEKVAEA GGKSHLERNIS+IQRKGYTSD ELEELDSPLS IVD
Sbjct: 702 YIAAPVVYISPSTSDVAEKVAEAGGGKSHLERNISAIQRKGYTSDGELEELDSPLSLIVD 761

Query: 183 KPTTLSPTYNADGNGCHEDDTTF---NMRYKLLREVWS 217
           K T+ SPTYNA GN  HE+DT F   NMRYKLL+EVWS
Sbjct: 762 KSTS-SPTYNAHGNDRHEEDTMFISSNMRYKLLQEVWS 798

[Close]

BLAST of Carg22471 vs. ExPASy TrEMBL
Match: A0A6J1EB09 (uncharacterized protein LOC111432417 OS=Cucurbita moschata OX=3662 GN=LOC111432417 PE=3 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 9.3e-98
Identity = 187/218 (85.78%), Postives = 199/218 (91.28%), Query Frame = 0


Query: 3   VGNWSRWLTNVIGIDADDSSVDQHGSDDDIRPDADGRSKSFPLLNSLSDLLMLPKDMLTD 62
           VGNWSRWLT+++GIDADDSSVDQHGSDDDIRPD DGR +SFPLLNSLSDLLMLPKDMLTD
Sbjct: 582 VGNWSRWLTDMVGIDADDSSVDQHGSDDDIRPDVDGRPQSFPLLNSLSDLLMLPKDMLTD 641

Query: 63  RSVREEICPSISLPLITRILCNFTPDEFCPDPVSGTVLESLNAASIVERRVSGYSGRNFP 122
           RS+REE+CPSISLPLITRILCNFTPDEFCPDPV GTVLE LNA +IVERR+SGYSGR+FP
Sbjct: 642 RSIREEVCPSISLPLITRILCNFTPDEFCPDPVPGTVLELLNAENIVERRLSGYSGRSFP 701

Query: 123 YTAAPVVYISPSTSDVAEKVAEA-GGKSHLERNISSIQRKGYTSDEELEELDSPLSTIVD 182
           Y AAPVVYISPSTSDVAEKVAEA GGKSHLERNIS+IQRKGYTSD ELEELDSPLS IVD
Sbjct: 702 YIAAPVVYISPSTSDVAEKVAEAGGGKSHLERNISAIQRKGYTSDGELEELDSPLSLIVD 761

Query: 183 KPTTLSPTYNADGNGCHEDDTTF---NMRYKLLREVWS 217
           K T+ SPTYNA GN  HE DT F   NMRYKLL+EVWS
Sbjct: 762 KSTS-SPTYNAHGNDRHEGDTMFISSNMRYKLLQEVWS 798

[Close]

BLAST of Carg22471 vs. TAIR 10
Match: AT2G42320.1 (nucleolar protein gar2-related )

HSP 1 Score: 225.7 bits (574), Expect = 3.8e-59
Identity = 130/215 (60.47%), Postives = 153/215 (71.16%), Query Frame = 0


Query: 3   VGNWSRWLTNVIGIDADDSSV-DQHGSDDDIRPDADGRSKSFPLLNSLSDLLMLPKDMLT 62
           +GNWSR LT + G+++DDSS  ++  S+DD        SK+F LLN LSDLLMLPKDML 
Sbjct: 476 IGNWSRCLTEMFGMNSDDSSAKEKRNSEDD-----HVESKAFVLLNELSDLLMLPKDMLM 535

Query: 63  DRSVREEICPSISLPLITRILCNFTPDEFCPDPVSGTVLESLNAA-SIVERRVSGYSGRN 122
           + S+REEICPSISLPLI RILCNFTPDEFCPD V G VLE LNAA SI +R++S  S   
Sbjct: 536 EISIREEICPSISLPLIKRILCNFTPDEFCPDQVPGAVLEELNAAESIGDRKLSEAS--- 595

Query: 123 FPYTAAPVVYISPSTSDVAEKVAEAGGKSHLERNISSIQRKGYTSDEELEELDSPLSTIV 182
           FPY A+ V Y+ PST D+AEKVAEA  K  L RN+S IQRKGYTSDEELEELDSPL++IV
Sbjct: 596 FPYAASSVSYMPPSTMDIAEKVAEASAK--LSRNVSMIQRKGYTSDEELEELDSPLTSIV 655

Query: 183 DKPTTLSPTYNADGNGCHEDDTTFNMRYKLLREVW 216
           DK +  +               T N RYKLLR+VW
Sbjct: 656 DKASDFT------------GSATSNARYKLLRQVW 668

[Close]

BLAST of Carg22471 vs. TAIR 10
Match: AT2G42320.2 (nucleolar protein gar2-related )

HSP 1 Score: 225.7 bits (574), Expect = 3.8e-59
Identity = 130/215 (60.47%), Postives = 153/215 (71.16%), Query Frame = 0


Query: 3   VGNWSRWLTNVIGIDADDSSV-DQHGSDDDIRPDADGRSKSFPLLNSLSDLLMLPKDMLT 62
           +GNWSR LT + G+++DDSS  ++  S+DD        SK+F LLN LSDLLMLPKDML 
Sbjct: 476 IGNWSRCLTEMFGMNSDDSSAKEKRNSEDD-----HVESKAFVLLNELSDLLMLPKDMLM 535

Query: 63  DRSVREEICPSISLPLITRILCNFTPDEFCPDPVSGTVLESLNAA-SIVERRVSGYSGRN 122
           + S+REEICPSISLPLI RILCNFTPDEFCPD V G VLE LNAA SI +R++S  S   
Sbjct: 536 EISIREEICPSISLPLIKRILCNFTPDEFCPDQVPGAVLEELNAAESIGDRKLSEAS--- 595

Query: 123 FPYTAAPVVYISPSTSDVAEKVAEAGGKSHLERNISSIQRKGYTSDEELEELDSPLSTIV 182
           FPY A+ V Y+ PST D+AEKVAEA  K  L RN+S IQRKGYTSDEELEELDSPL++IV
Sbjct: 596 FPYAASSVSYMPPSTMDIAEKVAEASAK--LSRNVSMIQRKGYTSDEELEELDSPLTSIV 655

Query: 183 DKPTTLSPTYNADGNGCHEDDTTFNMRYKLLREVW 216
           DK +  +               T N RYKLLR+VW
Sbjct: 656 DKASDFT------------GSATSNARYKLLRQVW 668

[Close]

BLAST of Carg22471 vs. TAIR 10
Match: AT3G57780.1 (BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 3163 Blast hits to 2460 proteins in 357 species: Archae - 16; Bacteria - 291; Metazoa - 841; Fungi - 335; Plants - 248; Viruses - 72; Other Eukaryotes - 1360 (source: NCBI BLink). )

HSP 1 Score: 204.5 bits (519), Expect = 9.0e-53
Identity = 120/220 (54.55%), Postives = 147/220 (66.82%), Query Frame = 0


Query: 3   VGNWSRWLTNVIGIDADDSSVDQHGSDDDIRPDADGRSKSFPLLNSLSDLLMLPKDMLTD 62
           +GNWSR L  +  I+  DS  +    +D I  +     KSF LLN LSDLLMLPKDML D
Sbjct: 470 IGNWSRCLAEMFSINTRDSVEE----NDPIESE-----KSFSLLNELSDLLMLPKDMLMD 529

Query: 63  RSVREEICPSISLPLITRILCNFTPDEFCPDPVSGTVLESLNAASIVERRVSGYSGRNFP 122
           RS REE+CPSISL LI RILCNFTPDEFCPD V G VLE LN  SI E+++SG S   FP
Sbjct: 530 RSTREEVCPSISLALIKRILCNFTPDEFCPDDVPGAVLEELNNESISEQKLSGVS---FP 589

Query: 123 YTAAPVVYISPSTSDVAEKVAEAGGKSHLERNISSIQRKGYTSDEELEELDSPLSTIVDK 182
           Y A+PV Y  PS+++    VAE G  S + RN+S IQRKGYTSD+ELEELDSPL++I++ 
Sbjct: 590 YAASPVSYTPPSSTN----VAEVGDISRMSRNVSMIQRKGYTSDDELEELDSPLTSIIEN 649

Query: 183 PTTLSPTYNADGNGCHEDDTTFN-----MRYKLLREVWSI 218
             +LSP  +A G    ++           RY+LLREVWS+
Sbjct: 650 -VSLSP-ISAQGRNVKQEAEKIGPGVTISRYELLREVWSM 671

[Close]

BLAST of Carg22471 vs. TAIR 10
Match: AT3G01810.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 1327 Blast hits to 470 proteins in 132 species: Archae - 2; Bacteria - 131; Metazoa - 139; Fungi - 114; Plants - 114; Viruses - 0; Other Eukaryotes - 827 (source: NCBI BLink). )

HSP 1 Score: 159.5 bits (402), Expect = 3.3e-39
Identity = 95/216 (43.98%), Postives = 126/216 (58.33%), Query Frame = 0


Query: 3   VGNWSRWLTNVIGI-DADDSSVDQHGSDDDIRPDADGRSKSFPLLNSLSDLLMLPKDMLT 62
           +GNWSRWLT++ GI D DD S D++          +   K+F LL +LSDL+MLPKDML 
Sbjct: 721 IGNWSRWLTDLFGIDDEDDDSSDENSY-------VEKSFKTFNLLKALSDLMMLPKDMLL 780

Query: 63  DRSVREEICPSISLPLITRILCNFTPDEFCPDPVSGTVLESLNAASIVERRVSGYSGRNF 122
           + SVR+E+CP    PLI R+L NF PDEFCPDPV   VL+SL +    E+ +      ++
Sbjct: 781 NSSVRKEVCPMFGAPLIKRVLNNFVPDEFCPDPVPDAVLKSLESEEEAEKSII----TSY 840

Query: 123 PYTAAPVVYISPSTSDVAEKVAEAGGKS--HLERNISSIQRKGYTSDEELEELDSPLSTI 182
           P TA   VY  PS + ++  +   G      L R  SSI RK YTSD+EL+EL SPL+ +
Sbjct: 841 PCTAPSPVYCPPSRTSISTIIGNFGQPQAPQLSRIRSSITRKAYTSDDELDELSSPLAVV 900

Query: 183 VDKPTTLSPTYNADGNGCHEDDTTFNMRYKLLREVW 216
           V +        N D      D+T   +RY+LLRE W
Sbjct: 901 VLQQAGSKKINNGDA-----DET---IRYQLLRECW 917

[Close]

BLAST of Carg22471 vs. TAIR 10
Match: AT3G01810.3 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2). )

HSP 1 Score: 159.5 bits (402), Expect = 3.3e-39
Identity = 95/216 (43.98%), Postives = 126/216 (58.33%), Query Frame = 0


Query: 3   VGNWSRWLTNVIGI-DADDSSVDQHGSDDDIRPDADGRSKSFPLLNSLSDLLMLPKDMLT 62
           +GNWSRWLT++ GI D DD S D++          +   K+F LL +LSDL+MLPKDML 
Sbjct: 721 IGNWSRWLTDLFGIDDEDDDSSDENSY-------VEKSFKTFNLLKALSDLMMLPKDMLL 780

Query: 63  DRSVREEICPSISLPLITRILCNFTPDEFCPDPVSGTVLESLNAASIVERRVSGYSGRNF 122
           + SVR+E+CP    PLI R+L NF PDEFCPDPV   VL+SL +    E+ +      ++
Sbjct: 781 NSSVRKEVCPMFGAPLIKRVLNNFVPDEFCPDPVPDAVLKSLESEEEAEKSII----TSY 840

Query: 123 PYTAAPVVYISPSTSDVAEKVAEAGGKS--HLERNISSIQRKGYTSDEELEELDSPLSTI 182
           P TA   VY  PS + ++  +   G      L R  SSI RK YTSD+EL+EL SPL+ +
Sbjct: 841 PCTAPSPVYCPPSRTSISTIIGNFGQPQAPQLSRIRSSITRKAYTSDDELDELSSPLAVV 900

Query: 183 VDKPTTLSPTYNADGNGCHEDDTTFNMRYKLLREVW 216
           V +        N D      D+T   +RY+LLRE W
Sbjct: 901 VLQQAGSKKINNGDA-----DET---IRYQLLRECW 917

The following BLAST results are available for this feature:

BLAST of Carg22471 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033544.1	1.2e-126	100.00	hypothetical protein SDJN02_03266, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6603242.1	1.3e-117	99.53	hypothetical protein SDJN03_03851, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022928667.1	1.8e-116	98.60	uncharacterized protein LOC111435516 [Cucurbita moschata] >XP_022928668.1 unchar...	[more]
XP_022967725.1	3.8e-114	96.74	uncharacterized protein LOC111467165 [Cucurbita maxima] >XP_022967726.1 uncharac...	[more]
XP_023543544.1	1.5e-113	96.28	uncharacterized protein LOC111803398 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg22471 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg22471 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EKK4	8.9e-117	98.60	uncharacterized protein LOC111435516 OS=Cucurbita moschata OX=3662 GN=LOC1114355...	[more]
A0A6J1HRL7	1.9e-114	96.74	uncharacterized protein LOC111467165 OS=Cucurbita maxima OX=3661 GN=LOC111467165...	[more]
A0A0A0L2Q7	1.1e-98	86.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G572860 PE=3 SV=1	[more]
A0A6J1HSY5	9.3e-98	85.32	uncharacterized protein LOC111465935 OS=Cucurbita maxima OX=3661 GN=LOC111465935...	[more]
A0A6J1EB09	9.3e-98	85.78	uncharacterized protein LOC111432417 OS=Cucurbita moschata OX=3662 GN=LOC1114324...	[more]

BLAST of Carg22471 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42320.1	3.8e-59	60.47	nucleolar protein gar2-related	[more]
AT2G42320.2	3.8e-59	60.47	nucleolar protein gar2-related	[more]
AT3G57780.1	9.0e-53	54.55	BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR...	[more]
AT3G01810.1	3.3e-39	43.98	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT3G01810.3	3.3e-39	43.98	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..39
None	No IPR available	PANTHER	PTHR31344:SF11	NUCLEOLAR PROTEIN GAR2-LIKE PROTEIN	coord: 2..216
IPR021827	Nucleoporin Nup186/Nup192/Nup205	PANTHER	PTHR31344	NUCLEAR PORE COMPLEX PROTEIN NUP205	coord: 2..216

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22471-RA	Carg22471-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005643	nuclear pore