Carg22422 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg22422
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr14: 11126627 .. 11129021 (+)
RNA-Seq ExpressionCarg22422
SyntenyCarg22422
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCGGGAAGCCGTCGATCTGCGCTTAAACGCCGACTTCCCACACAATTCTCATCTCTTGGTTTAATTATTACCACGTTCATAAGCGCAAGTCCACACAGCGCATCAGTTTATCTCTCTTGTTCTTCCAATTTTTCTTCCTCTTTCCTTCATAATTTCAGCTATCAGGTGGGTTTTTTTCACTTCAGTTTCTAATTCATCCCATCTGCGTTGTTTCTTTCTAGGATTTTGGCCTTTCGTACTGTTCTGTTCCGATTACAGAGAAACCCAAACGCCGAAGAATGTTGCTGTGTTTAGATTCTATGAATTTTGGAATCCATTTATAAATGGATTTCAGTCTCTTTAGTTTTCTTAATGCTCTTTACGAGTGGATTTTTCTCGTGATCTTTTTATGACTTCCAATTTTTTTTTGCCTTCGTTCTTGATGGGTTAAATTACTGTATGTTCTATATTCATATCATTTTGTTTCTATGTCATTATAGCTGGGTTATATTTCAGTTTGTTTACTAAATTATTGTTCTTTTTATTTTTTTTATTTTTTATTGAAGGAACAATATTGGGTTAGCAGTAAATAGATCATGTAGGAGCACTGTTCAGGGAAGATATTTACTGGCTGATGATAGTGGTAAGCATTTCTTTCGTTAACTCGTAGTGCTACTTCGTTTCTTCATTTTTTGCAGTTACATTGAAATTTCCTGAATATGTGCCTTTCTTTTACTTATTTTCAATTTTTTTTTATTAGGGGCGTTTGAAAAATTTGGTGAACAAGTTCGTTTTAAATTCTTTGTTCTTTTTTGTGCGAGTTCACTTGGATTTGTTTGATTCACAGTTCTTTGGTTGGGCCATAGTGATAAATCTCTGATCTTGAAGATGTCTGCCACTTAATCTAACTTTTAGAAGGAAAATCATTAGAGCTATTATATGGAATTGCATATTGCCTAAAATAGCCATGAGAATTACAAAAAGCAAGACCAGCGGGCTATAAGAGATCTAAGGCTGTAATAAAAAAAAAAAAAAGTATGGGGAGAATTTACACCAAGATAGGGAAGTATAAATAAGGTGACCCATAAGAAGCATCTGGAATGTGAGTGGAACACTGGGGAAGACCAAATGGTAGCGTTGACGCGTCCATGGCTGATTTCCTAAACGAGGAAAGGTTTTGACAAAGGGCACACTAGGGGGCCTTTCCATATATTCGTGTATAGGTTCTTATGATGTAGACTACCACTGGATGATAATTTGTAAGAAAGATATCTAGTTTTGTAGGAACCTTTAGTATCTAGGGTTCATTTCCATTGGTCTTCCACCGTAGGTCTAGAAGGGGGTTGTAAAAGAGTGGATCAGAGGGACAACTCAATGATCTTTTCTTTTGTAAGGTGTCTTCTTAAGCCAAGATCCCAAGAGGCATTATTTCTGTTCCAACATGCCGCAGTGGTTGATTTCTTGCGGCTTGAGAGAGTGTGAAGTCTGGAAGGCAGCTTTGAGAGGAGATGAACCCCAATTGTCAGTCCAAAAGGATATGGACTCACATTGTTGTCAAGGATCAAATCTTCTTGCTGTTGAATATATTTCCTTGGCCTCTTGAATGTTTGAGCTTGGATTGACTAGAGTGGTTGTTAGTCTCATCCCTCTTGTATACAAAATCATTATCAGAGTTCTCTTCAAAAACTGGAAACAGTCCTTCCATATGTTTAAGCTCCATTTTCAGCAGAGAGCGAGAGAGAGAGAGAGAGAGAATTGGGAGACTGTAGATTGACTATCTTAGACCCCTTAAATTGGCCTCAAAACCTGCTGTTAGATGTTCTGTGTTGGTGCTGCCCTGCCTACTGCTTTTTGTTATGCTCTTCTTAGTCAATGTTTACAGTGATACCTTCATCTTGTTCATTATTAATTTCTACCACTTCTATTTAGATATTCATCTGTGAGTTTAATTATCAATTATTACCTCTGCCTTTCTTGGCTATGACAATACTCATGTATTCTGCTTATAATCTTATCTAGATCTTTATAGTATTCTAGAGAATACTAAATATTCTGGAAAGTCCTGAAACTTTTTACGTACATGTTTTGTCAGAACTTGTAACTTCTGGAAAGTCCTAAATGTATACTTCTTCCATTCAGCATAATTATTGTGCTCTCATGCAGGCTATGTATGTGATGCTTCGTCTTTTGATCCACTATCTCGTTGCTGCCTAGGGAAAGGGGAAAAATTTCCTTGTCAGTGAGTTTTTTTCCAGATAAATCTTTGATGGCTCATGATGAGTGTAAGAGCTCGAGCTCTGTCGAGCATAGTATTTATTTTTCTGCTTACAATTTGCAGTGGATGCAATCTTGTTTCACAATGTTGTAATTCCTACGAATATTGTGTTTCATGCTGCCAGGATCCTTCAAGGGTAT

mRNA sequence

GGCGGGAAGCCGTCGATCTGCGCTTAAACGCCGACTTCCCACACAATTCTCATCTCTTGGTTTAATTATTACCACGTTCATAAGCGCAAGTCCACACAGCGCATCAGTTTATCTCTCTTGTTCTTCCAATTTTTCTTCCTCTTTCCTTCATAATTTCAGCTATCAGGAACAATATTGGGTTAGCAGTAAATAGATCATGTAGGAGCACTGTTCAGGGAAGATATTTACTGGCTGATGATAGTGGCTATGTATGTGATGCTTCGTCTTTTGATCCACTATCTCGTTGCTGCCTAGGGAAAGGGGAAAAATTTCCTTGTCATGGATGCAATCTTGTTTCACAATGTTGTAATTCCTACGAATATTGTGTTTCATGCTGCCAGGATCCTTCAAGGGTAT

Coding sequence (CDS)

ATGGATGCAATCTTGTTTCACAATGTTGTAATTCCTACGAATATTGTGTTTCATGCTGCCAGGATCCTTCAAGGGTAT

Protein sequence

MDAILFHNVVIPTNIVFHAARILQGY
Homology
[Close]
BLAST of Carg22422 vs. NCBI nr
Match: KAG7018480.1 (hypothetical protein SDJN02_20349, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 56.2 bits (134), Expect = 4.8e-05
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 0 

Query: 1  MDAILFHNVVIPTNIVFHAARILQGY 27
          MDAILFHNVVIPTNIVFHAARILQGY
Sbjct: 1  MDAILFHNVVIPTNIVFHAARILQGY 26

[Close]
BLAST of Carg22422 vs. NCBI nr
Match: KAG7018478.1 (hypothetical protein SDJN02_20347, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 53.5 bits (127), Expect = 3.1e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1   MDAILFHNVVIPTNIVFHAARILQG 26
           MDAILFHNVVIPTNIVFHAARILQG
Sbjct: 95  MDAILFHNVVIPTNIVFHAARILQG 119

The following BLAST results are available for this feature:
BLAST of Carg22422 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7018480.14.8e-05100.00hypothetical protein SDJN02_20349, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7018478.13.1e-04100.00hypothetical protein SDJN02_20347, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg22422 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg22422 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg22422 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22422-RACarg22422-RAmRNA