Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCCGGCGAAATTTCTGGCTCTGGTTATCGTCTTCCACCTCAAATCCGCCATCACCGCCGCCGACGACGCCTCCATGCCCACACCCACCTCCTGCGAGAACTGCGCCCTTTGTCAATCCGCCTGCCGTCCGCCTCCTGATGCACAACCGCTATTGCCGCCTCCACCACCGCCGCCAATTGCAGAGCCAGAGCCACTTCCAGTGCCGGTTCCCCCGGCGAACTGTCCTCCCACTATTGTCCAGTGCTGCCAGTTTATGCCGCCACCGGCACCGCCGCCGCCGCCGAATGGTAATAATATATATACGCCGTTTTATAATGAGTCGTGTTCTTCATTTTTGAAACGTGGGTTGGTCTCTGTTTTGGCCCCTGTTTTTGGGGTGGCCGCCATTTTCTGA
mRNA sequence
ATGTCTCCGGCGAAATTTCTGGCTCTGGTTATCGTCTTCCACCTCAAATCCGCCATCACCGCCGCCGACGACGCCTCCATGCCCACACCCACCTCCTGCGAGAACTGCGCCCTTTGTCAATCCGCCTGCCGTCCGCCTCCTGATGCACAACCGCTATTGCCGCCTCCACCACCGCCGCCAATTGCAGAGCCAGAGCCACTTCCAGTGCCGGTTCCCCCGGCGAACTGTCCTCCCACTATTGTCCAGTGCTGCCAGTTTATGCCGCCACCGGCACCGCCGCCGCCGCCGAATGGTAATAATATATATACGCCGTTTTATAATGAGTCGTGTTCTTCATTTTTGAAACGTGGGTTGGTCTCTGTTTTGGCCCCTGTTTTTGGGGTGGCCGCCATTTTCTGA
Coding sequence (CDS)
ATGTCTCCGGCGAAATTTCTGGCTCTGGTTATCGTCTTCCACCTCAAATCCGCCATCACCGCCGCCGACGACGCCTCCATGCCCACACCCACCTCCTGCGAGAACTGCGCCCTTTGTCAATCCGCCTGCCGTCCGCCTCCTGATGCACAACCGCTATTGCCGCCTCCACCACCGCCGCCAATTGCAGAGCCAGAGCCACTTCCAGTGCCGGTTCCCCCGGCGAACTGTCCTCCCACTATTGTCCAGTGCTGCCAGTTTATGCCGCCACCGGCACCGCCGCCGCCGCCGAATGGTAATAATATATATACGCCGTTTTATAATGAGTCGTGTTCTTCATTTTTGAAACGTGGGTTGGTCTCTGTTTTGGCCCCTGTTTTTGGGGTGGCCGCCATTTTCTGA
Protein sequence
MSPAKFLALVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPPDAQPLLPPPPPPPIAEPEPLPVPVPPANCPPTIVQCCQFMPPPAPPPPPNGNNIYTPFYNESCSSFLKRGLVSVLAPVFGVAAIF
Homology
BLAST of Carg22413 vs. NCBI nr
Match:
KAG7037325.1 (hypothetical protein SDJN02_00950, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 258.1 bits (658), Expect = 4.2e-65
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0
Query: 1 MSPAKFLALVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPPDAQPLLPPPPPPP 60
MSPAKFLALVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPPDAQPLLPPPPPPP
Sbjct: 1 MSPAKFLALVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPPDAQPLLPPPPPPP 60
Query: 61 IAEPEPLPVPVPPANCPPTIVQCCQFMPPPAPPPPPNGNNIYTPFYNESCSSFLKRGLVS 120
IAEPEPLPVPVPPANCPPTIVQCCQFMPPPAPPPPPNGNNIYTPFYNESCSSFLKRGLVS
Sbjct: 61 IAEPEPLPVPVPPANCPPTIVQCCQFMPPPAPPPPPNGNNIYTPFYNESCSSFLKRGLVS 120
Query: 121 VLAPVFGVAAIF 133
VLAPVFGVAAIF
Sbjct: 121 VLAPVFGVAAIF 132
BLAST of Carg22413 vs. NCBI nr
Match:
KAG6607747.1 (hypothetical protein SDJN03_01089, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 256.5 bits (654), Expect = 1.2e-64
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0
Query: 1 MSPAKFLALVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPPDAQPLLPPPPPPP 60
MSPAKFLALVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPPDAQPLLPPPPPPP
Sbjct: 1 MSPAKFLALVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPPDAQPLLPPPPPPP 60
Query: 61 IAEPEPLPVPVPPANCPPTIVQCCQFMPPPAPPPPPNGNNIYTPFYNESCSSFLKRGLVS 120
IAEPEPLPVPVPP NCPPTIVQCCQFMPPPAPPPPPNGNNIYTPFYNESCSSFLKRGLVS
Sbjct: 61 IAEPEPLPVPVPPGNCPPTIVQCCQFMPPPAPPPPPNGNNIYTPFYNESCSSFLKRGLVS 120
Query: 121 VLAPVFGVAAIF 133
VLAPVFGVAAIF
Sbjct: 121 VLAPVFGVAAIF 132
BLAST of Carg22413 vs. NCBI nr
Match:
XP_008463043.1 (PREDICTED: sperm mitochondrial-associated cysteine-rich protein-like [Cucumis melo])
HSP 1 Score: 171.0 bits (432), Expect = 6.8e-39
Identity = 97/137 (70.80%), Postives = 109/137 (79.56%), Query Frame = 0
Query: 1 MSPAKFLALVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPP-PDAQPLLPPPPPP 60
M PAK LALV+VF+L SA++A DDA+M TP SC+NC +CQS CRPP + PLLPPPPPP
Sbjct: 1 MFPAKLLALVVVFNLNSAVSATDDAAMATPISCDNCTICQSTCRPPQSEPLPLLPPPPPP 60
Query: 61 --PIAEPEPLPVPVPPANCPPTIVQCCQFMPPPAPPPPPN-GN-NIYTPFYNESCSSFLK 120
P AEPEPLP+PV PANCPPTIVQCCQF+PPP PPP GN NIYTP YNES SSFL+
Sbjct: 61 PAPYAEPEPLPIPVAPANCPPTIVQCCQFLPPPPPPPQATAGNGNIYTPIYNESSSSFLR 120
Query: 121 RGLVSVLAPVFGVAAIF 133
GL S LAPVFG+ AIF
Sbjct: 121 VGLGSALAPVFGLVAIF 137
BLAST of Carg22413 vs. NCBI nr
Match:
KGN44024.1 (hypothetical protein Csa_011878 [Cucumis sativus])
HSP 1 Score: 159.5 bits (402), Expect = 2.0e-35
Identity = 91/137 (66.42%), Postives = 105/137 (76.64%), Query Frame = 0
Query: 1 MSPAKFLALVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPPDAQPL---LPPPP 60
M PAK LALV+VF+L +A++A DDA+MPTP SC+NC +CQS C PPP ++PL L PPP
Sbjct: 44 MFPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPP-SEPLPLPLSPPP 103
Query: 61 PPPIAEPEPLPVPVPPANCPPTIVQCCQFMPPPAPPPPPN--GNNIYTPFYNESCSSFLK 120
P P AEPEPLP PV PANCPPTIVQCCQF+PPP PPP N+YTP YN S SSFL+
Sbjct: 104 PSPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSS-SSFLR 163
Query: 121 RGLVSVLAPVFGVAAIF 133
GL S LAPVFG+ AIF
Sbjct: 164 VGLGSALAPVFGLLAIF 178
BLAST of Carg22413 vs. NCBI nr
Match:
XP_011659730.1 (leucine-rich repeat extensin-like protein 3 [Cucumis sativus])
HSP 1 Score: 159.5 bits (402), Expect = 2.0e-35
Identity = 91/137 (66.42%), Postives = 105/137 (76.64%), Query Frame = 0
Query: 1 MSPAKFLALVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPPDAQPL---LPPPP 60
M PAK LALV+VF+L +A++A DDA+MPTP SC+NC +CQS C PPP ++PL L PPP
Sbjct: 1 MFPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPP-SEPLPLPLSPPP 60
Query: 61 PPPIAEPEPLPVPVPPANCPPTIVQCCQFMPPPAPPPPPN--GNNIYTPFYNESCSSFLK 120
P P AEPEPLP PV PANCPPTIVQCCQF+PPP PPP N+YTP YN S SSFL+
Sbjct: 61 PSPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSS-SSFLR 120
Query: 121 RGLVSVLAPVFGVAAIF 133
GL S LAPVFG+ AIF
Sbjct: 121 VGLGSALAPVFGLLAIF 135
BLAST of Carg22413 vs. ExPASy TrEMBL
Match:
A0A1S3CI95 (sperm mitochondrial-associated cysteine-rich protein-like OS=Cucumis melo OX=3656 GN=LOC103501284 PE=4 SV=1)
HSP 1 Score: 171.0 bits (432), Expect = 3.3e-39
Identity = 97/137 (70.80%), Postives = 109/137 (79.56%), Query Frame = 0
Query: 1 MSPAKFLALVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPP-PDAQPLLPPPPPP 60
M PAK LALV+VF+L SA++A DDA+M TP SC+NC +CQS CRPP + PLLPPPPPP
Sbjct: 1 MFPAKLLALVVVFNLNSAVSATDDAAMATPISCDNCTICQSTCRPPQSEPLPLLPPPPPP 60
Query: 61 --PIAEPEPLPVPVPPANCPPTIVQCCQFMPPPAPPPPPN-GN-NIYTPFYNESCSSFLK 120
P AEPEPLP+PV PANCPPTIVQCCQF+PPP PPP GN NIYTP YNES SSFL+
Sbjct: 61 PAPYAEPEPLPIPVAPANCPPTIVQCCQFLPPPPPPPQATAGNGNIYTPIYNESSSSFLR 120
Query: 121 RGLVSVLAPVFGVAAIF 133
GL S LAPVFG+ AIF
Sbjct: 121 VGLGSALAPVFGLVAIF 137
BLAST of Carg22413 vs. ExPASy TrEMBL
Match:
A0A0A0K536 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G111300 PE=4 SV=1)
HSP 1 Score: 159.5 bits (402), Expect = 9.9e-36
Identity = 91/137 (66.42%), Postives = 105/137 (76.64%), Query Frame = 0
Query: 1 MSPAKFLALVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPPDAQPL---LPPPP 60
M PAK LALV+VF+L +A++A DDA+MPTP SC+NC +CQS C PPP ++PL L PPP
Sbjct: 44 MFPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPP-SEPLPLPLSPPP 103
Query: 61 PPPIAEPEPLPVPVPPANCPPTIVQCCQFMPPPAPPPPPN--GNNIYTPFYNESCSSFLK 120
P P AEPEPLP PV PANCPPTIVQCCQF+PPP PPP N+YTP YN S SSFL+
Sbjct: 104 PSPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSS-SSFLR 163
Query: 121 RGLVSVLAPVFGVAAIF 133
GL S LAPVFG+ AIF
Sbjct: 164 VGLGSALAPVFGLLAIF 178
BLAST of Carg22413 vs. ExPASy TrEMBL
Match:
A0A443NET1 (Nitrile-specifier protein 5 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_00547500 PE=4 SV=1)
HSP 1 Score: 59.3 bits (142), Expect = 1.4e-05
Identity = 50/121 (41.32%), Postives = 63/121 (52.07%), Query Frame = 0
Query: 1 MSPAKFLALVIVFHLKSAITAAD-----DASMPTPTSCENCALCQSACRPPPDAQPLLPP 60
MS K + LV + S+I A+ D ++P+P +C NC+LCQ C P P A P P
Sbjct: 6 MSCPKLVFLVSLRLSISSIIVAETPNPLDDNIPSPVACFNCSLCQYPCNPSPPATPAYQP 65
Query: 61 PPPPPIAEPEPLPVPVPPANCPPT-IVQCCQFMPPPAPPPPPNGNNIYTPFYNESCSSFL 116
PPP P P P P+NCPP+ QCCQ PP P PPPN P+YN S L
Sbjct: 66 FAPPPSPPPPPSPSMPVPSNCPPSPPSQCCQVPPPGPPHPPPN-----IPYYNYGTSPPL 121
BLAST of Carg22413 vs. ExPASy TrEMBL
Match:
A0A6A1VX00 (4Fe-4S ferredoxin-type domain-containing protein OS=Morella rubra OX=262757 GN=CJ030_MR4G016275 PE=4 SV=1)
HSP 1 Score: 55.5 bits (132), Expect = 2.0e-04
Identity = 53/137 (38.69%), Postives = 64/137 (46.72%), Query Frame = 0
Query: 17 SAITAADDASMPTPTSCENCALCQSACRPP----PD----AQPLLPPPPPPPIAE----- 76
SA A +P+P++C NC LCQ C P PD P LPPPPPP +AE
Sbjct: 22 SATGEASGDVLPSPSACTNCTLCQYPCHTPAPPLPDYPLYGTPPLPPPPPPSLAEYPPYE 81
Query: 77 -PEPLPVPVPP-------ANCPP-TIVQCCQFMPPPAPPPPPNGNNIYTPFYNESCSSFL 132
P P P PP NCPP T+VQCCQ+ PPP G Y P+ N S S
Sbjct: 82 TSSPPPPPPPPPSQLPAQGNCPPTTVVQCCQY-----PPPIAYG---YVPYNNYSASCPS 141
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG7037325.1 | 4.2e-65 | 100.00 | hypothetical protein SDJN02_00950, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAG6607747.1 | 1.2e-64 | 99.24 | hypothetical protein SDJN03_01089, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_008463043.1 | 6.8e-39 | 70.80 | PREDICTED: sperm mitochondrial-associated cysteine-rich protein-like [Cucumis me... | [more] |
| KGN44024.1 | 2.0e-35 | 66.42 | hypothetical protein Csa_011878 [Cucumis sativus] | [more] |
| XP_011659730.1 | 2.0e-35 | 66.42 | leucine-rich repeat extensin-like protein 3 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A1S3CI95 | 3.3e-39 | 70.80 | sperm mitochondrial-associated cysteine-rich protein-like OS=Cucumis melo OX=365... | [more] |
| A0A0A0K536 | 9.9e-36 | 66.42 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G111300 PE=4 SV=1 | [more] |
| A0A443NET1 | 1.4e-05 | 41.32 | Nitrile-specifier protein 5 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=C... | [more] |
| A0A6A1VX00 | 2.0e-04 | 38.69 | 4Fe-4S ferredoxin-type domain-containing protein OS=Morella rubra OX=262757 GN=C... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
