Carg22394 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg22394
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description30S ribosomal protein S10
LocationCarg_Chr01: 9247204 .. 9249118 (-)
RNA-Seq ExpressionCarg22394
SyntenyCarg22394
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATTTATTTGGATAACGGTAGAGGTGGGAGAAAAAAGCTTCCGCCATTGATACTCGGAGGAATTTCAATGGCTATTTCTTCACTCTCTGCCACTATAATTCCATCTCCAACTCTATTTGGTCCTATCTCATCTCTTTCTTCTAAACCTAAACTTCTCCCCTTCTCTGCTTCCTCTACTTCTGTTTCAAAGCTCAACCCTCTTCAATTTTCGTTGTCCTCGACTAGGGTTTATGCCGCACCTGAAGTTCTAGACTCCCCTGGCACCATTGAACCGCCTCCGGAAATCTTGGAGGGCTCTGGAGCTGCCGTTCTCGAGGTTTGTGATAATGTTGCAATTTCTCTATGTTTTTTGTGATGGGTGTAAGAATTGTTGTTCTTATATGGTCTTAATAGTTCTGGTTTTAGCCCGGGATGTCATTAACTCGTGCTCTAGATATCCATTTTGTCTTCAATTGCATTGCAAGTAACTTGGGATTTTTTTTTTCCCCTTTAAGATCATGGATGAAACAGTGCTTCTATTGTTGTTTTTAATGTATTGTTCATGTTTAGGGTGAAGATTTTGAGGTGCCTGGGACTTCAGCGCTAAGTATTGGTGAGGATGTGGATAAGGTAACTTTTATGGTTTCCAGACAGTGTTTTACTCTCGCATCCTGTAGCTTGCTAAAGATTATCAAATATTCTGCAGAGCAATTTCTGAAACCAAGACTAAACTCTGAAATTTGTATTGGTTTTGAGTGACTAGAAAATATACAATGAAATCATTTGTTTAGGTTATATGTATGATGATTGATGATCATGCAAGGTTATCCAGGTTAGTTCCTATGAGATCCCATATCAGTTGTGAAGAGGAGAATGAAACATTCCTTATAAGATTGTGGAAACCTAGATGCGTTTTAAAACCTTGAGGGGAAACTCGGAAGGGAAAATATCTGCTAGCGGTGAACTTGCGCTATTACAAATGGTATCAAAGTCAGTCATCAAGCGGTGTGCCAGCGAGGACACTGGCCCCTAAGGGGGGTGGATTGTGAGATCCCTCATCGGTTGGAGAGGGGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAATCCTGAAGGAAAGCCCAGAAGGGAAAGCTCAAAGAGGACAACATCTATTAGCGGTGGACTTGGACGGTAACATATGTTACCGTTCCTAACTAAATAGAAATTTATGTACATATTGGTTCACGTGTTAACTAGAATGCTAAATAGAAGGTGAGAGATCTCATATTGCATTGAAAGTTCTCAATGTATGTGAATGTTTGGAATATTACTGTCTTCTTTACTCCTTTTTATCCTAAAGGAAACTTCTCAACCAAGTAGTACAAAGTTCTCCAATTATACAATGGTTTCACTGGCTTCATTTTTTCGACTTATTGGCTAGGATATCGACGTTGATTTTTGTACCTTTCTGTTTTTTACAGTATGCCAATATGATCTTCATCAGATTGTCATGTTAGATTATGTGATTTGTTTGCTTATCAGCTCATCTTTGCCATAGTGTCCATCCTCTTCTTATGTTTGGAAATTTTTTAGTGACTAAAAATGTTTATGGTTTCAGCTGGCCCCAAAGCAGAAAATAAGAATTAAGCTAAGATCTTACTGGGTTCCCCTCATTGAAGATTCTTGCAAGCAGATATTGGATGCTGCAAGGAACACGAATGCAAAAACCATGGGTCCCGTGCCATTACCTACGAAAAAACGCATCTATTGTGTTCTTAAATCCCCTCATGTTCATAAGGATGCAAGATTCCATTTCGAAATCAGAACCCACCAGCGGCTAATTGATATTTTGTACCCTACTGCTCAAACAATTGATTCTTTGATGCAACTCGACCTTCCAGCTGGTGTTGATGTGGAGGTCAAGCTATGA

mRNA sequence

AAATTTATTTGGATAACGGTAGAGGTGGGAGAAAAAAGCTTCCGCCATTGATACTCGGAGGAATTTCAATGGCTATTTCTTCACTCTCTGCCACTATAATTCCATCTCCAACTCTATTTGGTCCTATCTCATCTCTTTCTTCTAAACCTAAACTTCTCCCCTTCTCTGCTTCCTCTACTTCTGTTTCAAAGCTCAACCCTCTTCAATTTTCGTTGTCCTCGACTAGGGTTTATGCCGCACCTGAAGTTCTAGACTCCCCTGGCACCATTGAACCGCCTCCGGAAATCTTGGAGGGCTCTGGAGCTGCCGTTCTCGAGGGTGAAGATTTTGAGGTGCCTGGGACTTCAGCGCTAAGTATTGGTGAGGATGTGGATAAGCTGGCCCCAAAGCAGAAAATAAGAATTAAGCTAAGATCTTACTGGGTTCCCCTCATTGAAGATTCTTGCAAGCAGATATTGGATGCTGCAAGGAACACGAATGCAAAAACCATGGGTCCCGTGCCATTACCTACGAAAAAACGCATCTATTGTGTTCTTAAATCCCCTCATGTTCATAAGGATGCAAGATTCCATTTCGAAATCAGAACCCACCAGCGGCTAATTGATATTTTGTACCCTACTGCTCAAACAATTGATTCTTTGATGCAACTCGACCTTCCAGCTGGTGTTGATGTGGAGGTCAAGCTATGA

Coding sequence (CDS)

ATGGCTATTTCTTCACTCTCTGCCACTATAATTCCATCTCCAACTCTATTTGGTCCTATCTCATCTCTTTCTTCTAAACCTAAACTTCTCCCCTTCTCTGCTTCCTCTACTTCTGTTTCAAAGCTCAACCCTCTTCAATTTTCGTTGTCCTCGACTAGGGTTTATGCCGCACCTGAAGTTCTAGACTCCCCTGGCACCATTGAACCGCCTCCGGAAATCTTGGAGGGCTCTGGAGCTGCCGTTCTCGAGGGTGAAGATTTTGAGGTGCCTGGGACTTCAGCGCTAAGTATTGGTGAGGATGTGGATAAGCTGGCCCCAAAGCAGAAAATAAGAATTAAGCTAAGATCTTACTGGGTTCCCCTCATTGAAGATTCTTGCAAGCAGATATTGGATGCTGCAAGGAACACGAATGCAAAAACCATGGGTCCCGTGCCATTACCTACGAAAAAACGCATCTATTGTGTTCTTAAATCCCCTCATGTTCATAAGGATGCAAGATTCCATTTCGAAATCAGAACCCACCAGCGGCTAATTGATATTTTGTACCCTACTGCTCAAACAATTGATTCTTTGATGCAACTCGACCTTCCAGCTGGTGTTGATGTGGAGGTCAAGCTATGA

Protein sequence

MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEVLDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Homology
[Close]
BLAST of Carg22394 vs. NCBI nr
Match: KAG7037344.1 (30S ribosomal protein S10, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 398.3 bits (1022), Expect = 4.1e-107
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 60
           MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 60

Query: 61  LDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]
BLAST of Carg22394 vs. NCBI nr
Match: XP_022981608.1 (30S ribosomal protein S10, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 396.7 bits (1018), Expect = 1.2e-106
Identity = 205/206 (99.51%), Postives = 205/206 (99.51%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 60
           MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV
Sbjct: 7   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 66

Query: 61  LDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDSPGT EPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 67  LDSPGTFEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 126

Query: 121 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 127 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 186

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 187 LYPTAQTIDSLMQLDLPAGVDVEVKL 212

[Close]
BLAST of Carg22394 vs. NCBI nr
Match: XP_022940678.1 (30S ribosomal protein S10, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 395.6 bits (1015), Expect = 2.6e-106
Identity = 204/206 (99.03%), Postives = 205/206 (99.51%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 60
           MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 60

Query: 61  LDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDSPGTIEPPPEILEGSGAAVLEGEDFE PGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSPGTIEPPPEILEGSGAAVLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQILD+ARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQILDSARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]
BLAST of Carg22394 vs. NCBI nr
Match: XP_023525519.1 (30S ribosomal protein S10, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 393.7 bits (1010), Expect = 1.0e-105
Identity = 204/206 (99.03%), Postives = 204/206 (99.03%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 60
           MAISSLSATIIPSPTL GPISSLSSKPKLLPFSAS TSVSKLNPLQFSLSSTRVYAAPEV
Sbjct: 1   MAISSLSATIIPSPTLLGPISSLSSKPKLLPFSASFTSVSKLNPLQFSLSSTRVYAAPEV 60

Query: 61  LDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]
BLAST of Carg22394 vs. NCBI nr
Match: XP_008462962.2 (PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis melo])

HSP 1 Score: 363.2 bits (931), Expect = 1.5e-96
Identity = 188/206 (91.26%), Postives = 192/206 (93.20%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 60
           MAISSLSATIIPSPTLF  +SS SSKPK LPF  SS++  KL PLQFSL STRVYAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFLPFPGSSSTALKLKPLQFSLPSTRVYAAPEV 60

Query: 61  LDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDS  TIEPPPEILEGSG A LEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]
BLAST of Carg22394 vs. ExPASy Swiss-Prot
Match: Q9LK61 (30S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS10 PE=2 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 7.6e-64
Identity = 141/210 (67.14%), Postives = 163/210 (77.62%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTLFG-PISSLSS---KPKLLPFSASSTSVSKLNPLQFSLSSTRVYA 60
           MA+S++S+ ++PS   FG P SS SS   K  LLP S++   +S     + S+S T+V+A
Sbjct: 1   MAVSTVSSFLLPS---FGIPSSSPSSTRLKVSLLPSSSTHGGLSSCVLTKPSVSLTKVFA 60

Query: 61  APEVLDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRS 120
            P+ LD      P PEIL+   +        EVP +S++S+  D DK+APKQKIRIKLRS
Sbjct: 61  VPDTLD------PTPEILDEPAS--------EVPSSSSISV--DADKMAPKQKIRIKLRS 120

Query: 121 YWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR 180
           YWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR
Sbjct: 121 YWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR 180

Query: 181 LIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           +IDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 MIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191

[Close]
BLAST of Carg22394 vs. ExPASy Swiss-Prot
Match: Q9M4Y3 (30S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 GN=RPS10 PE=2 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 3.8e-63
Identity = 141/212 (66.51%), Postives = 158/212 (74.53%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASST------SVSKLNPLQFSLSSTRV 60
           MA SSLS TI+ SP      SS  +KP++   S  S+      ++S  +P   S S+ RV
Sbjct: 1   MATSSLS-TIVFSPLALSNSSSFPNKPQVSNLSLHSSLSNLRRTLSHSSPSSSSSSNVRV 60

Query: 61  YAAPEVLDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKL 120
           +AAPEVL+S  T         G  + V EG +     TSAL IG D D++APKQKIRIKL
Sbjct: 61  FAAPEVLESQET---------GPESYVEEGSE-----TSALGIGADSDQMAPKQKIRIKL 120

Query: 121 RSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTH 180
           RSYWVPLIEDSCKQI+DAAR TNAKTMGPVPLPTKKRI+CVLKSPHVHKDARFHFEIRTH
Sbjct: 121 RSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIFCVLKSPHVHKDARFHFEIRTH 180

Query: 181 QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 197

[Close]
BLAST of Carg22394 vs. ExPASy Swiss-Prot
Match: P82162 (30S ribosomal protein S10 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS10 PE=1 SV=2)

HSP 1 Score: 221.5 bits (563), Expect = 9.0e-57
Identity = 131/217 (60.37%), Postives = 150/217 (69.12%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTL-----------FGPISSLSSKPKLLPFSASSTSVSKLNPLQFSL 60
           MA SS+SA ++   TL           F  +SSL+ +  L P   S  ++S       + 
Sbjct: 1   MATSSISAALLSPLTLRNASSSSTKQDFSTLSSLNLRRTLTPTLQSGHTLS-------NS 60

Query: 61  SSTRVYAAPEVLDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQK 120
           S+   +AAP  L          E+LE S  +  +G +     TS +SI  D D++APKQK
Sbjct: 61  SNFATFAAPGAL----------EVLETSPDSFEDGSE-----TSKISIAADSDQMAPKQK 120

Query: 121 IRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHF 180
           IRIKLRSYWVPLIEDSCKQI+DAAR TNAK MGPVPLPTKKRIYCVLKSPHVHKDARFHF
Sbjct: 121 IRIKLRSYWVPLIEDSCKQIMDAARTTNAKIMGPVPLPTKKRIYCVLKSPHVHKDARFHF 180

Query: 181 EIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           EIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 EIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 195

[Close]
BLAST of Carg22394 vs. ExPASy Swiss-Prot
Match: P17009 (Cyanelle 30S ribosomal protein S10 OS=Cyanophora paradoxa OX=2762 GN=rps10 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.3e-33
Identity = 65/98 (66.33%), Postives = 86/98 (87.76%), Query Frame = 0 

Query: 109 KIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFH 168
           KIRI+LRSY   L+E+SC+QI++AA+ T+A  +GP+PLPTKK+IYCVL+SPHV KD+R H
Sbjct: 8   KIRIQLRSYDSSLLENSCEQIIEAAKRTDATAVGPIPLPTKKKIYCVLRSPHVDKDSREH 67

Query: 169 FEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           FEIR H+R+ID+  P+++TID+L +LDLPAGVDVEVKL
Sbjct: 68  FEIRVHRRIIDLYLPSSKTIDTLTRLDLPAGVDVEVKL 105

[Close]
BLAST of Carg22394 vs. ExPASy Swiss-Prot
Match: P51286 (30S ribosomal protein S10, chloroplastic OS=Porphyra purpurea OX=2787 GN=rps10 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.4e-32
Identity = 64/98 (65.31%), Postives = 84/98 (85.71%), Query Frame = 0 

Query: 109 KIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFH 168
           KIRIKL++Y   L+  SCK+I+D A  TNA  +GP+PLPTK+RIYCVL+SPHV KD+R H
Sbjct: 8   KIRIKLKAYNSSLLNTSCKKIVDTAERTNAIAVGPIPLPTKRRIYCVLRSPHVDKDSREH 67

Query: 169 FEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           FEIR+H+R+IDI  P++QTID+LM+L+LP+GVD+EVKL
Sbjct: 68  FEIRSHRRIIDIHQPSSQTIDALMKLNLPSGVDIEVKL 105

[Close]
BLAST of Carg22394 vs. ExPASy TrEMBL
Match: A0A6J1J2J9 (30S ribosomal protein S10, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480677 PE=3 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 5.7e-107
Identity = 205/206 (99.51%), Postives = 205/206 (99.51%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 60
           MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV
Sbjct: 7   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 66

Query: 61  LDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDSPGT EPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 67  LDSPGTFEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 126

Query: 121 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 127 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 186

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 187 LYPTAQTIDSLMQLDLPAGVDVEVKL 212

[Close]
BLAST of Carg22394 vs. ExPASy TrEMBL
Match: A0A6J1FPZ5 (30S ribosomal protein S10, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446197 PE=3 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.3e-106
Identity = 204/206 (99.03%), Postives = 205/206 (99.51%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 60
           MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 60

Query: 61  LDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDSPGTIEPPPEILEGSGAAVLEGEDFE PGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSPGTIEPPPEILEGSGAAVLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQILD+ARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQILDSARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]
BLAST of Carg22394 vs. ExPASy TrEMBL
Match: A0A1S3CI46 (30S ribosomal protein S10, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501224 PE=3 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 7.0e-97
Identity = 188/206 (91.26%), Postives = 192/206 (93.20%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 60
           MAISSLSATIIPSPTLF  +SS SSKPK LPF  SS++  KL PLQFSL STRVYAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFLPFPGSSSTALKLKPLQFSLPSTRVYAAPEV 60

Query: 61  LDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDS  TIEPPPEILEGSG A LEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]
BLAST of Carg22394 vs. ExPASy TrEMBL
Match: A0A0A0LEH6 (Ribosomal_S10 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G769090 PE=3 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.7e-96
Identity = 186/206 (90.29%), Postives = 192/206 (93.20%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 60
           MAISSLSATIIPSPTLF  +SS SSKPK  PF ASS++  KL PLQFS  STR+YAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60

Query: 61  LDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDSP TIEPPPEILEGSG + LEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]
BLAST of Carg22394 vs. ExPASy TrEMBL
Match: A0A6J1CD58 (30S ribosomal protein S10, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111010584 PE=3 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 5.0e-95
Identity = 181/206 (87.86%), Postives = 194/206 (94.17%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 60
           MAISSLSA+IIPSPTL GP+SSLSSKP+LLPFS SS++  KL PLQFS SSTRVYAAPEV
Sbjct: 1   MAISSLSASIIPSPTLLGPLSSLSSKPRLLPFSGSSSTALKLKPLQFSSSSTRVYAAPEV 60

Query: 61  LDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDS  TIEPPPEILEGSGA+ LEGE++E PGTSALSIGEDVD+LAPKQKIRIKLRSYWVP
Sbjct: 61  LDSSDTIEPPPEILEGSGASTLEGEEYETPGTSALSIGEDVDRLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQI+DAAR+TNAK MGPVPLPTKKRIYCV+KSPHVHKD+RFHFE RTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARSTNAKIMGPVPLPTKKRIYCVIKSPHVHKDSRFHFETRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]
BLAST of Carg22394 vs. TAIR 10
Match: AT3G13120.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 245.0 bits (624), Expect = 5.4e-65
Identity = 141/210 (67.14%), Postives = 163/210 (77.62%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTLFG-PISSLSS---KPKLLPFSASSTSVSKLNPLQFSLSSTRVYA 60
           MA+S++S+ ++PS   FG P SS SS   K  LLP S++   +S     + S+S T+V+A
Sbjct: 1   MAVSTVSSFLLPS---FGIPSSSPSSTRLKVSLLPSSSTHGGLSSCVLTKPSVSLTKVFA 60

Query: 61  APEVLDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRS 120
            P+ LD      P PEIL+   +        EVP +S++S+  D DK+APKQKIRIKLRS
Sbjct: 61  VPDTLD------PTPEILDEPAS--------EVPSSSSISV--DADKMAPKQKIRIKLRS 120

Query: 121 YWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR 180
           YWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR
Sbjct: 121 YWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR 180

Query: 181 LIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           +IDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 MIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191

[Close]
BLAST of Carg22394 vs. TAIR 10
Match: AT3G13120.2 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 245.0 bits (624), Expect = 5.4e-65
Identity = 141/210 (67.14%), Postives = 163/210 (77.62%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTLFG-PISSLSS---KPKLLPFSASSTSVSKLNPLQFSLSSTRVYA 60
           MA+S++S+ ++PS   FG P SS SS   K  LLP S++   +S     + S+S T+V+A
Sbjct: 1   MAVSTVSSFLLPS---FGIPSSSPSSTRLKVSLLPSSSTHGGLSSCVLTKPSVSLTKVFA 60

Query: 61  APEVLDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRS 120
            P+ LD      P PEIL+   +        EVP +S++S+  D DK+APKQKIRIKLRS
Sbjct: 61  VPDTLD------PTPEILDEPAS--------EVPSSSSISV--DADKMAPKQKIRIKLRS 120

Query: 121 YWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR 180
           YWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR
Sbjct: 121 YWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR 180

Query: 181 LIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           +IDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 MIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191

The following BLAST results are available for this feature:
BLAST of Carg22394 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037344.14.1e-107100.0030S ribosomal protein S10, chloroplastic [Cucurbita argyrosperma subsp. argyrosp... [more]
XP_022981608.11.2e-10699.5130S ribosomal protein S10, chloroplastic-like [Cucurbita maxima][more]
XP_022940678.12.6e-10699.0330S ribosomal protein S10, chloroplastic-like [Cucurbita moschata][more]
XP_023525519.11.0e-10599.0330S ribosomal protein S10, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_008462962.21.5e-9691.26PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis melo][more]
BLAST of Carg22394 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LK617.6e-6467.1430S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1... [more]
Q9M4Y33.8e-6366.5130S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum OX=354... [more]
P821629.0e-5760.3730S ribosomal protein S10 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=R... [more]
P170095.3e-3366.33Cyanelle 30S ribosomal protein S10 OS=Cyanophora paradoxa OX=2762 GN=rps10 PE=3 ... [more]
P512863.4e-3265.3130S ribosomal protein S10, chloroplastic OS=Porphyra purpurea OX=2787 GN=rps10 P... [more]
BLAST of Carg22394 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1J2J95.7e-10799.5130S ribosomal protein S10, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1FPZ51.3e-10699.0330S ribosomal protein S10, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A1S3CI467.0e-9791.2630S ribosomal protein S10, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501224... [more]
A0A0A0LEH62.7e-9690.29Ribosomal_S10 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G7690... [more]
A0A6J1CD585.0e-9587.8630S ribosomal protein S10, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
BLAST of Carg22394 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G13120.15.4e-6567.14Ribosomal protein S10p/S20e family protein [more]
AT3G13120.25.4e-6567.14Ribosomal protein S10p/S20e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001848Ribosomal protein S10PRINTSPR00971RIBOSOMALS10coord: 109..122
score: 42.58
coord: 165..179
score: 52.82
coord: 144..159
score: 53.37
IPR001848Ribosomal protein S10TIGRFAMTIGR01049TIGR01049coord: 108..205
e-value: 1.4E-39
score: 132.3
IPR001848Ribosomal protein S10PANTHERPTHR1170030S RIBOSOMAL PROTEIN S10 FAMILY MEMBERcoord: 1..206
IPR001848Ribosomal protein S10HAMAPMF_00508Ribosomal_S10coord: 107..206
score: 24.107977
IPR027486Ribosomal protein S10 domainSMARTSM01403Ribosomal_S10_2coord: 111..205
e-value: 5.5E-51
score: 185.4
IPR027486Ribosomal protein S10 domainPFAMPF00338Ribosomal_S10coord: 111..205
e-value: 2.6E-32
score: 111.0
IPR036838Ribosomal protein S10 domain superfamilyGENE3D3.30.70.600Ribosomal protein S10 domaincoord: 98..206
e-value: 6.5E-41
score: 140.9
IPR036838Ribosomal protein S10 domain superfamilySUPERFAMILY54999Ribosomal protein S10coord: 109..206
NoneNo IPR availablePANTHERPTHR11700:SF31BNAC05G40270D PROTEINcoord: 1..206
IPR018268Ribosomal protein S10, conserved sitePROSITEPS00361RIBOSOMAL_S10coord: 133..148

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22394-RACarg22394-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding