Carg22344 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22344
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RNA polymerase II elongation factor
Location	Carg_Chr16: 7464993 .. 7465640 (+)
RNA-Seq Expression	Carg22344
Synteny	Carg22344

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACCGAAACGAAAGATTCCGGTGCCGCCGCGCACGTAGTCGAAATCCCAGCAGAGAATCAGAACGTTATGATCTCTGTAATAGAACAACACCCATTGAGGCAAATCTCCGAAAGCTCTGGCCATTTATTGCTTTTAAAGCTCTGGCAACGAGAGGAGCATCTGTTCGGCCTACGAATTGGGCGGCGAGAGACCAAACTGGAGTCTCTAAAGCAACAGATCTTCCAACTCTGCTGCTACTTCTTCCTGTTCCACGCCCTGTCTCTGACTCTCTTGTTCACTTCGTCCGATCCCAATGTGTGCCACAAATGGTGGGTTCCGGGAGTGGCAATGGGGGCGACGTCGGGCGTGTTCGTGATCGTGGTGCAGCTGAAATTGTGGCTGTATTGGAAGGCATCAGCGCAGCTGCAAAGGGAGAAGAGTGAGAACAGAGCACTTACAAGATGTGTTCAAGAGCTGAGGATGAAAGGGTCGTGTTTTAATTTGTCGAAAGAGCCTCAAATTGGGCATAGGATGAAGAGCTCTAGTGTGGAGATTAAATGGGGGCCTCTTACTTGGTTGTCCAGGAATTTCGTCACCATTTTTCTTCTGTGCTTTTCTGGCATTGTTTTTGGTGCTTCCAAGTTCATACTCTGTGGCCTTTGA

mRNA sequence

ATGGCGACCGAAACGAAAGATTCCGGTGCCGCCGCGCACGTAGTCGAAATCCCAGCAGAGAATCAGAACGTTATGATCTCTGTAATAGAACAACACCCATTGAGGCAAATCTCCGAAAGCTCTGGCCATTTATTGCTTTTAAAGCTCTGGCAACGAGAGGAGCATCTGTTCGGCCTACGAATTGGGCGGCGAGAGACCAAACTGGAGTCTCTAAAGCAACAGATCTTCCAACTCTGCTGCTACTTCTTCCTGTTCCACGCCCTGTCTCTGACTCTCTTGTTCACTTCGTCCGATCCCAATGTGTGCCACAAATGGTGGGTTCCGGGAGTGGCAATGGGGGCGACGTCGGGCGTGTTCGTGATCGTGGTGCAGCTGAAATTGTGGCTGTATTGGAAGGCATCAGCGCAGCTGCAAAGGGAGAAGAGTGAGAACAGAGCACTTACAAGATGTGTTCAAGAGCTGAGGATGAAAGGGTCGTGTTTTAATTTGTCGAAAGAGCCTCAAATTGGGCATAGGATGAAGAGCTCTAGTGTGGAGATTAAATGGGGGCCTCTTACTTGGTTGTCCAGGAATTTCGTCACCATTTTTCTTCTGTGCTTTTCTGGCATTGTTTTTGGTGCTTCCAAGTTCATACTCTGTGGCCTTTGA

Coding sequence (CDS)

ATGGCGACCGAAACGAAAGATTCCGGTGCCGCCGCGCACGTAGTCGAAATCCCAGCAGAGAATCAGAACGTTATGATCTCTGTAATAGAACAACACCCATTGAGGCAAATCTCCGAAAGCTCTGGCCATTTATTGCTTTTAAAGCTCTGGCAACGAGAGGAGCATCTGTTCGGCCTACGAATTGGGCGGCGAGAGACCAAACTGGAGTCTCTAAAGCAACAGATCTTCCAACTCTGCTGCTACTTCTTCCTGTTCCACGCCCTGTCTCTGACTCTCTTGTTCACTTCGTCCGATCCCAATGTGTGCCACAAATGGTGGGTTCCGGGAGTGGCAATGGGGGCGACGTCGGGCGTGTTCGTGATCGTGGTGCAGCTGAAATTGTGGCTGTATTGGAAGGCATCAGCGCAGCTGCAAAGGGAGAAGAGTGAGAACAGAGCACTTACAAGATGTGTTCAAGAGCTGAGGATGAAAGGGTCGTGTTTTAATTTGTCGAAAGAGCCTCAAATTGGGCATAGGATGAAGAGCTCTAGTGTGGAGATTAAATGGGGGCCTCTTACTTGGTTGTCCAGGAATTTCGTCACCATTTTTCTTCTGTGCTTTTCTGGCATTGTTTTTGGTGCTTCCAAGTTCATACTCTGTGGCCTTTGA

Protein sequence

MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCGL

Homology

[Close]

BLAST of Carg22344 vs. NCBI nr
Match: KAG7015562.1 (hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 433.0 bits (1112), Expect = 1.6e-117
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60
           MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR
Sbjct: 1   MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60

Query: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120
           IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV
Sbjct: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120

Query: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 180
           IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI
Sbjct: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 180

Query: 181 KWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCGL 216
           KWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCGL
Sbjct: 181 KWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCGL 215

[Close]

BLAST of Carg22344 vs. NCBI nr
Match: XP_022965180.1 (uncharacterized protein LOC111465114 [Cucurbita maxima])

HSP 1 Score: 426.8 bits (1096), Expect = 1.1e-115
Identity = 211/215 (98.14%), Postives = 213/215 (99.07%), Query Frame = 0


Query: 1   MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60
           MATETKDSGAA H+VEIPAENQN+MISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR
Sbjct: 1   MATETKDSGAATHIVEIPAENQNIMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60

Query: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120
           IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV
Sbjct: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120

Query: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 180
           IVVQLKLWLYWKASAQLQREKSENRALTR VQELRMKGSCFNLSKEPQIGHRMKSSSVEI
Sbjct: 121 IVVQLKLWLYWKASAQLQREKSENRALTRIVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 180

Query: 181 KWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCGL 216
           KWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCGL
Sbjct: 181 KWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCGL 215

[Close]

BLAST of Carg22344 vs. NCBI nr
Match: XP_022932317.1 (uncharacterized protein LOC111438709 [Cucurbita moschata])

HSP 1 Score: 425.2 bits (1092), Expect = 3.3e-115
Identity = 213/215 (99.07%), Postives = 213/215 (99.07%), Query Frame = 0


Query: 1   MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60
           MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR
Sbjct: 1   MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60

Query: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120
           IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV
Sbjct: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120

Query: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 180
           IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI
Sbjct: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 180

Query: 181 KWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCGL 216
           KWGPLT LSRNFVTI LLCFSGIVFGASKFILCGL
Sbjct: 181 KWGPLTLLSRNFVTIVLLCFSGIVFGASKFILCGL 215

[Close]

BLAST of Carg22344 vs. NCBI nr
Match: XP_023553388.1 (uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 421.8 bits (1083), Expect = 3.6e-114
Identity = 210/215 (97.67%), Postives = 213/215 (99.07%), Query Frame = 0


Query: 1   MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60
           MATET+DSG AAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR
Sbjct: 1   MATETRDSG-AAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60

Query: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120
           +GRRETK+ESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV
Sbjct: 61  VGRRETKMESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120

Query: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 180
           IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI
Sbjct: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 180

Query: 181 KWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCGL 216
           KWGPLTWLSRNFVTI LLCFSGIVFGASKFILCGL
Sbjct: 181 KWGPLTWLSRNFVTIVLLCFSGIVFGASKFILCGL 214

[Close]

BLAST of Carg22344 vs. NCBI nr
Match: XP_038905570.1 (uncharacterized protein LOC120091553 [Benincasa hispida] >XP_038905571.1 uncharacterized protein LOC120091553 [Benincasa hispida])

HSP 1 Score: 375.2 bits (962), Expect = 3.9e-100
Identity = 189/216 (87.50%), Postives = 198/216 (91.67%), Query Frame = 0


Query: 4   ETKDSGAAAHVVEIPAE------NQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLF 63
           ETKDSG  AH+VEIP E      NQN MISVI+ HPLRQISESSGHLLLLKLWQR+EHLF
Sbjct: 3   ETKDSG--AHIVEIPVEQENHTQNQNPMISVIQHHPLRQISESSGHLLLLKLWQRDEHLF 62

Query: 64  GLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSG 123
           GLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDPNVC KWWVP VAMGATSG
Sbjct: 63  GLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPNVCKKWWVPAVAMGATSG 122

Query: 124 VFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSS 183
           VFVIVVQLKLWLYWKAS QLQREK+ENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSS
Sbjct: 123 VFVIVVQLKLWLYWKASGQLQREKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSS 182

Query: 184 VEIKWGPLTWLSRNFVTIFLLCFSGIVFGASKFILC 214
           VEIKWGPLTW SRNF+TIFLL FS IVF ASKFILC
Sbjct: 183 VEIKWGPLTWFSRNFITIFLLGFSAIVFAASKFILC 216

[Close]

BLAST of Carg22344 vs. ExPASy TrEMBL
Match: A0A6J1HN07 (uncharacterized protein LOC111465114 OS=Cucurbita maxima OX=3661 GN=LOC111465114 PE=4 SV=1)

HSP 1 Score: 426.8 bits (1096), Expect = 5.4e-116
Identity = 211/215 (98.14%), Postives = 213/215 (99.07%), Query Frame = 0


Query: 1   MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60
           MATETKDSGAA H+VEIPAENQN+MISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR
Sbjct: 1   MATETKDSGAATHIVEIPAENQNIMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60

Query: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120
           IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV
Sbjct: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120

Query: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 180
           IVVQLKLWLYWKASAQLQREKSENRALTR VQELRMKGSCFNLSKEPQIGHRMKSSSVEI
Sbjct: 121 IVVQLKLWLYWKASAQLQREKSENRALTRIVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 180

Query: 181 KWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCGL 216
           KWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCGL
Sbjct: 181 KWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCGL 215

[Close]

BLAST of Carg22344 vs. ExPASy TrEMBL
Match: A0A6J1EWB5 (uncharacterized protein LOC111438709 OS=Cucurbita moschata OX=3662 GN=LOC111438709 PE=4 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 1.6e-115
Identity = 213/215 (99.07%), Postives = 213/215 (99.07%), Query Frame = 0


Query: 1   MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60
           MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR
Sbjct: 1   MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60

Query: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120
           IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV
Sbjct: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120

Query: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 180
           IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI
Sbjct: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 180

Query: 181 KWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCGL 216
           KWGPLT LSRNFVTI LLCFSGIVFGASKFILCGL
Sbjct: 181 KWGPLTLLSRNFVTIVLLCFSGIVFGASKFILCGL 215

[Close]

BLAST of Carg22344 vs. ExPASy TrEMBL
Match: A0A1S3BL81 (uncharacterized protein LOC103491049 OS=Cucumis melo OX=3656 GN=LOC103491049 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 3.6e-96
Identity = 181/215 (84.19%), Postives = 193/215 (89.77%), Query Frame = 0


Query: 4   ETKDSGAAAHVVEIPAE----NQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGL 63
           +TKDS  AAH+VEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGL
Sbjct: 3   QTKDS-TAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGL 62

Query: 64  RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVF 123
           RIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP VC KWWVP V +GATSGVF
Sbjct: 63  RIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGVF 122

Query: 124 VIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVE 183
           VIVVQLKLW+YWKA  QLQREKSENRALTRC QELRMKGSCFNLSKEPQIG+RMKSSSVE
Sbjct: 123 VIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSVE 182

Query: 184 IKWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCG 215
           IKWGPLTW SRNF+ I LL FS IVF ASKFILCG
Sbjct: 183 IKWGPLTWFSRNFIAISLLGFSAIVFAASKFILCG 216

[Close]

BLAST of Carg22344 vs. ExPASy TrEMBL
Match: A0A0A0L2U7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061020 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 6.2e-96
Identity = 180/215 (83.72%), Postives = 194/215 (90.23%), Query Frame = 0


Query: 4   ETKDSGAAAHVVEIPAE----NQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGL 63
           ETKDS  AAH+VEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGL
Sbjct: 3   ETKDS-TAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGL 62

Query: 64  RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVF 123
           RIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP VC KWWVP V +GATSGVF
Sbjct: 63  RIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGVF 122

Query: 124 VIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVE 183
           VIVVQLKLW+YWKA  QLQ+EK+ENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVE
Sbjct: 123 VIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVE 182

Query: 184 IKWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCG 215
           IKWGPLTW SRNF+TI LL FS I+F  SKFILCG
Sbjct: 183 IKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCG 216

[Close]

BLAST of Carg22344 vs. ExPASy TrEMBL
Match: A0A5A7VJ68 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001520 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.7e-67
Identity = 128/147 (87.07%), Postives = 135/147 (91.84%), Query Frame = 0


Query: 68  LESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFVIVVQLKL 127
           +ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP VC KWWVP V +GATSGVFVIVVQLKL
Sbjct: 1   MESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGVFVIVVQLKL 60

Query: 128 WLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTW 187
           W+YWKA  QLQREKSENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLTW
Sbjct: 61  WMYWKARGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTW 120

Query: 188 LSRNFVTIFLLCFSGIVFGASKFILCG 215
            SRNF+ I LL FS IVF ASKFILCG
Sbjct: 121 FSRNFIAISLLGFSAIVFAASKFILCG 147

[Close]

BLAST of Carg22344 vs. TAIR 10
Match: AT5G56120.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12870.1); Has 77 Blast hits to 75 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 232.3 bits (591), Expect = 3.8e-61
Identity = 123/236 (52.12%), Postives = 158/236 (66.95%), Query Frame = 0


Query: 5   TKDSGAAAHVVEIPAENQNV-----------------MISVIEQHPLRQISESSGHLLLL 64
           TKDS    HVVEIP + ++                  ++ VI+QHPL +ISES GHLLLL
Sbjct: 4   TKDS----HVVEIPVDEEHKERQQQQQLVAVSNPGMGILKVIQQHPLSEISESPGHLLLL 63

Query: 65  KLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN------- 124
           KLWQREE LF  R+  +E++LES+K++IFQLCC+F +FH    TL+++SS  +       
Sbjct: 64  KLWQREEDLFCRRVLLKESRLESIKREIFQLCCFFLVFHGFFFTLVYSSSCSDDADVVKS 123

Query: 125 --VCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKG 184
             VC KWW+P     ATS V V +VQ KL+++WK    + RE+++NR LTRCV ELRMKG
Sbjct: 124 NAVCKKWWIPSAVSLATSLVLVFLVQAKLFVFWKVYRGVNRERNDNRTLTRCVLELRMKG 183

Query: 185 SCFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCG 215
           S F+LSKEP  G RMKSSSVEIKW P+TW S+  +TI LLC +G+ F  SKFILCG
Sbjct: 184 SSFDLSKEPMSGKRMKSSSVEIKWKPVTWFSQYLITIVLLCSAGLFFPVSKFILCG 235

[Close]

BLAST of Carg22344 vs. TAIR 10
Match: AT3G12870.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56120.1); Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 117.1 bits (292), Expect = 1.8e-26
Identity = 70/191 (36.65%), Postives = 111/191 (58.12%), Query Frame = 0


Query: 31  QHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSL 90
           +HPL QI+++  H LLLK W +EE L   R+  +E++++S++++I QL  +FFLFH++SL
Sbjct: 17  RHPLHQIADTPTHKLLLKQWLKEEELILSRVSHKESQIDSVRREITQLYIFFFLFHSISL 76

Query: 91  TLLF-------TSSDPNVCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSE 150
            LLF       +S+  + C + W+P +    +S   +  V+ K  +       L+REK +
Sbjct: 77  LLLFHASSSSSSSASSSACKRSWIPSLCALLSSLGIIWAVRYKSEVESHLEKLLEREKED 136

Query: 151 NRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPL-TWLSRNFVTIFLLCFSG 210
            + L +CV+EL+ KG  F+L KE     R KS  VE K  P+  W +R+FVT+F    S 
Sbjct: 137 AKLLRKCVEELKKKGIEFDLLKEVDALRRAKSLRVESK--PVKKWSARDFVTLFFFSVSC 196

Query: 211 IVFGASKFILC 214
           +V    + ILC
Sbjct: 197 LVLAMIRLILC 205

The following BLAST results are available for this feature:

BLAST of Carg22344 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015562.1	1.6e-117	100.00	hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022965180.1	1.1e-115	98.14	uncharacterized protein LOC111465114 [Cucurbita maxima]	[more]
XP_022932317.1	3.3e-115	99.07	uncharacterized protein LOC111438709 [Cucurbita moschata]	[more]
XP_023553388.1	3.6e-114	97.67	uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo]	[more]
XP_038905570.1	3.9e-100	87.50	uncharacterized protein LOC120091553 [Benincasa hispida] >XP_038905571.1 unchara...	[more]

BLAST of Carg22344 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg22344 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HN07	5.4e-116	98.14	uncharacterized protein LOC111465114 OS=Cucurbita maxima OX=3661 GN=LOC111465114...	[more]
A0A6J1EWB5	1.6e-115	99.07	uncharacterized protein LOC111438709 OS=Cucurbita moschata OX=3662 GN=LOC1114387...	[more]
A0A1S3BL81	3.6e-96	84.19	uncharacterized protein LOC103491049 OS=Cucumis melo OX=3656 GN=LOC103491049 PE=...	[more]
A0A0A0L2U7	6.2e-96	83.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061020 PE=4 SV=1	[more]
A0A5A7VJ68	2.7e-67	87.07	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Carg22344 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56120.1	3.8e-61	52.12	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G12870.1	1.8e-26	36.65	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 137..157
None	No IPR available	PANTHER	PTHR33287	OS03G0453550 PROTEIN	coord: 1..214
None	No IPR available	PANTHER	PTHR33287:SF3	OS03G0453550 PROTEIN	coord: 1..214

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22344-RA	Carg22344-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane