Carg22251 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg22251
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr16: 3106266 .. 3106673 (+)
RNA-Seq Expression	Carg22251
Synteny	Carg22251

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGGCAATTTGATTTCAAGCTTGAACAAAAAGTTGCAGGCGGTTGAGATCAGTAATCGCTGCAGACGAACGAAGAAGACGACTAACGTATACAGAGGCGATATGAGCAAGAAGAAGCAGCCGCAGTTGCCGTCGCAGGGGAAGCCGGAGATCGAGAAAGTGAAGAAGAGAGTGAGATTTGCAGATACGGAACCGGTGATAATCGCCATTGACAGAGAGGAGCGGAGTACAGAGGAGGAAACAGAGAAGAAAGTCGTTAGAATTACGGTGAAATTGACGAAGCAAGAAGCGAATCGGATGCTTTCGAGGTGCTCCGATGGCGGCGTTCTAGAATTCAGAGATGTTGCGAGTGAGCTCATGCGGATTCCTGCGGCCCGCGTTAGCTCTTCTATGGTAGTCAATTGA

mRNA sequence

ATGATCGGCAATTTGATTTCAAGCTTGAACAAAAAGTTGCAGGCGGTTGAGATCAGTAATCGCTGCAGACGAACGAAGAAGACGACTAACGTATACAGAGGCGATATGAGCAAGAAGAAGCAGCCGCAGTTGCCGTCGCAGGGGAAGCCGGAGATCGAGAAAGTGAAGAAGAGAGTGAGATTTGCAGATACGGAACCGGTGATAATCGCCATTGACAGAGAGGAGCGGAGTACAGAGGAGGAAACAGAGAAGAAAGTCGTTAGAATTACGGTGAAATTGACGAAGCAAGAAGCGAATCGGATGCTTTCGAGGTGCTCCGATGGCGGCGTTCTAGAATTCAGAGATGTTGCGAGTGAGCTCATGCGGATTCCTGCGGCCCGCGTTAGCTCTTCTATGGTAGTCAATTGA

Coding sequence (CDS)

ATGATCGGCAATTTGATTTCAAGCTTGAACAAAAAGTTGCAGGCGGTTGAGATCAGTAATCGCTGCAGACGAACGAAGAAGACGACTAACGTATACAGAGGCGATATGAGCAAGAAGAAGCAGCCGCAGTTGCCGTCGCAGGGGAAGCCGGAGATCGAGAAAGTGAAGAAGAGAGTGAGATTTGCAGATACGGAACCGGTGATAATCGCCATTGACAGAGAGGAGCGGAGTACAGAGGAGGAAACAGAGAAGAAAGTCGTTAGAATTACGGTGAAATTGACGAAGCAAGAAGCGAATCGGATGCTTTCGAGGTGCTCCGATGGCGGCGTTCTAGAATTCAGAGATGTTGCGAGTGAGCTCATGCGGATTCCTGCGGCCCGCGTTAGCTCTTCTATGGTAGTCAATTGA

Protein sequence

MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKRVRFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFRDVASELMRIPAARVSSSMVVN

Homology

[Close]

BLAST of Carg22251 vs. NCBI nr
Match: KAG7015140.1 (hypothetical protein SDJN02_22773, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 249.6 bits (636), Expect = 1.5e-62
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKRVR 60
           MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKRVR
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKRVR 60

Query: 61  FADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFRDVASEL 120
           FADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFRDVASEL
Sbjct: 61  FADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFRDVASEL 120

Query: 121 MRIPAARVSSSMVVN 136
           MRIPAARVSSSMVVN
Sbjct: 121 MRIPAARVSSSMVVN 135

[Close]

BLAST of Carg22251 vs. NCBI nr
Match: KAG6577140.1 (hypothetical protein SDJN03_24714, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 247.7 bits (631), Expect = 5.8e-62
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKRVR 60
           MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLP QGKPEIEKVKKRVR
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPPQGKPEIEKVKKRVR 60

Query: 61  FADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFRDVASEL 120
           FADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFRDVASEL
Sbjct: 61  FADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFRDVASEL 120

Query: 121 MRIPAARVSSSMVVN 136
           MRIPAARVSSSMVVN
Sbjct: 121 MRIPAARVSSSMVVN 135

[Close]

BLAST of Carg22251 vs. NCBI nr
Match: XP_022931429.1 (uncharacterized protein LOC111437608 [Cucurbita moschata])

HSP 1 Score: 241.9 bits (616), Expect = 3.2e-60
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKRVR 60
           MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKRVR
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKRVR 60

Query: 61  FADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFRDVASEL 120
           FADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEF DVASEL
Sbjct: 61  FADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVASEL 120

Query: 121 MRIPAARVSSSM 133
           MRIPAARVSSSM
Sbjct: 121 MRIPAARVSSSM 132

[Close]

BLAST of Carg22251 vs. NCBI nr
Match: XP_023522331.1 (uncharacterized protein LOC111786247 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.0 bits (611), Expect = 1.2e-59
Identity = 130/132 (98.48%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKRVR 60
           MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKRVR
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKRVR 60

Query: 61  FADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFRDVASEL 120
           FADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCS+GGVLEF DVASEL
Sbjct: 61  FADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASEL 120

Query: 121 MRIPAARVSSSM 133
           MRIPAARVSSSM
Sbjct: 121 MRIPAARVSSSM 132

[Close]

BLAST of Carg22251 vs. NCBI nr
Match: XP_023552096.1 (uncharacterized protein LOC111809864 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.8 bits (608), Expect = 2.7e-59
Identity = 129/132 (97.73%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKRVR 60
           MIGNLISSLNKKLQAV+ISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKRVR
Sbjct: 1   MIGNLISSLNKKLQAVDISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKRVR 60

Query: 61  FADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFRDVASEL 120
           FADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCS+GGVLEF DVASEL
Sbjct: 61  FADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASEL 120

Query: 121 MRIPAARVSSSM 133
           MRIPAARVSSSM
Sbjct: 121 MRIPAARVSSSM 132

[Close]

BLAST of Carg22251 vs. ExPASy TrEMBL
Match: A0A6J1EU86 (uncharacterized protein LOC111437608 OS=Cucurbita moschata OX=3662 GN=LOC111437608 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.6e-60
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKRVR 60
           MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKRVR
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKRVR 60

Query: 61  FADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFRDVASEL 120
           FADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEF DVASEL
Sbjct: 61  FADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVASEL 120

Query: 121 MRIPAARVSSSM 133
           MRIPAARVSSSM
Sbjct: 121 MRIPAARVSSSM 132

[Close]

BLAST of Carg22251 vs. ExPASy TrEMBL
Match: A0A6J1JBA8 (uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.1e-57
Identity = 129/134 (96.27%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQ--LPSQGKPEIEKVKKR 60
           MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYR DMSKKKQPQ   PSQGKPEIEKVKKR
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRRDMSKKKQPQSPSPSQGKPEIEKVKKR 60

Query: 61  VRFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFRDVAS 120
           VRFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEF DVAS
Sbjct: 61  VRFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVAS 120

Query: 121 ELMRIPAARVSSSM 133
           ELMRIPAARVSSSM
Sbjct: 121 ELMRIPAARVSSSM 134

[Close]

BLAST of Carg22251 vs. ExPASy TrEMBL
Match: A0A5D3D246 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003900 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.5e-42
Identity = 105/140 (75.00%), Postives = 113/140 (80.71%), Query Frame = 0


Query: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKP-----EIEKV 60
           MI NLISSLNKKLQAVEISNRC+RTKKTT VYR D++KKK     S   P     EI+KV
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKRTKKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKKV 60

Query: 61  KKRVRFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFRD 120
           KKRVRFADTEPVIIAI  +    EEETEKKVVRITVKLTKQEANRMLSRCS+ GVLEF D
Sbjct: 61  KKRVRFADTEPVIIAISTDREEEEEETEKKVVRITVKLTKQEANRMLSRCSNDGVLEFGD 120

Query: 121 VASELMRIPAARVSSSMVVN 136
           VASEL+RIP  RVSSS+V N
Sbjct: 121 VASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of Carg22251 vs. ExPASy TrEMBL
Match: A0A1S3BS40 (uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.5e-42
Identity = 105/140 (75.00%), Postives = 113/140 (80.71%), Query Frame = 0


Query: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKP-----EIEKV 60
           MI NLISSLNKKLQAVEISNRC+RTKKTT VYR D++KKK     S   P     EI+KV
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKRTKKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKKV 60

Query: 61  KKRVRFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFRD 120
           KKRVRFADTEPVIIAI  +    EEETEKKVVRITVKLTKQEANRMLSRCS+ GVLEF D
Sbjct: 61  KKRVRFADTEPVIIAISTDREEEEEETEKKVVRITVKLTKQEANRMLSRCSNDGVLEFGD 120

Query: 121 VASELMRIPAARVSSSMVVN 136
           VASEL+RIP  RVSSS+V N
Sbjct: 121 VASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of Carg22251 vs. ExPASy TrEMBL
Match: A0A0A0KYE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 4.7e-41
Identity = 105/142 (73.94%), Postives = 113/142 (79.58%), Query Frame = 0


Query: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKP-----EIEKV 60
           MI NLISSLNKKLQAVEIS+RC+RTKKT  VYR +++KK      S   P     EI+KV
Sbjct: 1   MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV 60

Query: 61  KKRVRFADTEPVIIAI--DREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEF 120
           KKRVRFADTEPVIIAI  DREE   E ETEKKVVRITVKLTKQEANRMLSRCS+GGVLEF
Sbjct: 61  KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF 120

Query: 121 RDVASELMRIPAARVSSSMVVN 136
            DVASELMRIP  RV SS+V N
Sbjct: 121 GDVASELMRIPPTRVRSSLVAN 142

The following BLAST results are available for this feature:

BLAST of Carg22251 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015140.1	1.5e-62	100.00	hypothetical protein SDJN02_22773, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6577140.1	5.8e-62	99.26	hypothetical protein SDJN03_24714, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022931429.1	3.2e-60	99.24	uncharacterized protein LOC111437608 [Cucurbita moschata]	[more]
XP_023522331.1	1.2e-59	98.48	uncharacterized protein LOC111786247 [Cucurbita pepo subsp. pepo]	[more]
XP_023552096.1	2.7e-59	97.73	uncharacterized protein LOC111809864 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg22251 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg22251 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EU86	1.6e-60	99.24	uncharacterized protein LOC111437608 OS=Cucurbita moschata OX=3662 GN=LOC1114376...	[more]
A0A6J1JBA8	2.1e-57	96.27	uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436...	[more]
A0A5D3D246	1.5e-42	75.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BS40	1.5e-42	75.00	uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=...	[more]
A0A0A0KYE1	4.7e-41	73.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1	[more]

BLAST of Carg22251 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..51
None	No IPR available	PANTHER	PTHR36782:SF1	BNAC03G62080D PROTEIN	coord: 1..133
None	No IPR available	PANTHER	PTHR36782	BNAC03G62080D PROTEIN	coord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22251-RA	Carg22251-RA	mRNA