Carg22243 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg22243
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr16: 3154298 .. 3157180 (-)
RNA-Seq ExpressionCarg22243
SyntenyCarg22243
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAAATGTGAAAAGCTACCATTTACAATGTCCTTACATCCTGCAGAAGTTGAGCCGAAGCAGAAGGTAGATGCCTTGCTTTCGAGCTTTTCGATGTTCTCAATAGTTTGATTACTGAATAAGTTCTCTTGCGAAAGCTGCAGCTGATGATGGTCGTGGTCATTTTCCTTCTTTTCTTGTATTTTTGGTGAATGACATGATTGGGCTAAATAGTTTCCTTGGGAACATGTGTGCTTTCCTCGATAGGTAATGTCAAACACAGAATGATCTTCATCTGATCTCTGCACTTGCTTTATTGCCCAACAATTCTGTGTATTGCGGAAAGTGCATCTATAGTAGCTTCTGCAAGTATACAACAAACAGGTATTAGATTTATTGATGTGAAACAGTAATAAGATTATAATTATAGTTCTACAATATATTTTGATATGGAAAATTGGATTCTTGTATTTTATTTGGTTTGGGTTCATGATAATTTTTTCTTTATTTCTTTTCAGTTAGCTTTAAAGAAAGTGGACTTTGACTTTGAATTTTTAGCCGCCGACGTTTCCTCCTTTTTTATGTCAAATTCCTTGTAGTTTCTTCTGGTTTTCCTTCATTGGGCCAATAGCATTCCTCCATTACAAGAACATCAAAATTTAAGATCTCCCCTCCCCCTAGCATGTTTGTATATATACTGAAGCAATGATATTTGTTTAAAATATTACTGTGGGGTATTAGAATATATGTTACCGTGTATGCCTTGCATGTTTTTCGAGCAGGAAGGAGAAGTCATCTCACCTGGGAAATGTTGCACCAAGTATGTCCTTTTGGCCATATTTTCTCCAGCTATAACCATCCTCATGGGGTCCTTCGAATCCCGTCTCGGAGTTCACTTTCACTTGTTCGGTCCATCTGGGCTGTGTCTTTCTGTAATCACAGAATCATAAAGATTTTTTTATTTGTTTCCAAGAATTGAACTTGTTTACTAACTAAGCTCATATTTGTTCTAAGGTTGACTTTGAAAAGCTGGAAAGAAAATTCTTAAATTCACCTCTTCTTTGATTCTTTTCTGGGGTCCTGAGGGTCCTTGAGGCCTTTACCAGAGTCATCACTAGAAAGACTTCCATTAACAGAAATTGGAGAGCCTGGCAAAGCAAAAGCTGCTTCTACCATTTGAGGTTGACTCATTGGTCCATTCCATTTCAGTATCGAAAGAGCCTTCTCATATGAAGATATAATCCCATGTACTAATGATCCTCTGCTTTCTTCTGCAGATGCTGAACTCAACTCTGCTTTCAACTGCTTGGTAAGCTCCATCCCCTGAATTAGCTCACCAATGAGTGACTTTTGATCCCAGCTCCACCCACTTTCCATTTTCAATTCCTCTCAGTTTCGTAAAACGAACTGAACCACCCTACCCTACCACTGTGCTAGTTCATGGTAGGAAGAACAAGAGCTCAGTGCATTTCAGTTTGGATTTGTAGGTAAGTCAAGAAGCAGAAGCTAGAGGAAATGGAAGACCCAAATGGTGAAGAATCAGAGACAACAAACATGGAAGTAGCCAGATGAGGTAATTTGGTTAACTGGGTATATTTGTGTTTATTTAAAACTGAACTGAGAGAGAAGAAGAAGAAGAATGCTTTGGTTTTAATAAGAACCGATCTTGGTTTTATACAAGTTCAAAAAGGAAGACAACTTTATTTCATTTTTCTTAAAAGAAAATGCTGTTGAACAGTTAGAAGTTGGGGAAACTTTGACTGAGACAGCCCCCTCAGTTGCTTTCTGGTCTTTGGTCATTGTCTGAGTGGAGTAAGATTAGTGTGGAAGTCCAAGTTCTAAAGCTGACCAAGTCCACTTCCACTTCATAATTTAACTTCCAAAAGGGTTTCTGTTTCTCTCTCTAGATCCTACGGCTGTGATTTGTTGAGAATGAAAATTTCATAATTGAGATAGTGAGACAAGTGGAAAGTCAGAGTTCAAGCTTGGAGAGTAGACTAAGAATTTTCAAACCTTTCGTCCGCGTTGTGGTATAGTAAACAACTACTTTTCATCTTTATTATTATTATTATTATTCTCTCTTTTTTTTTTTTTTTAAATCTCTAAGGCTTATGATTGTGAGTGGACTGCTCTTTTCATGCTATTTTTTTGTTCTCTTGCTGATTTTTCCTTAATCCTACTTGGATTAAATCTTAGACCTTAGTATTAGAAAAGCTTGGTCAAAATTAATGATTTCTGTGGGCATATTTGTTTTACTAAATTTTGTAATTTGGTCATTCTGGTTGGGCTTGATTATTTTTATCTGATATGACGTCATAATAGTAAGGTGATGTGATGTGATGTAATTGAAATTGCTACATTAAATTTCATTGTTGACCTTTCAGCCAATTTCATATTTAATTTTTAGTTAGTATCTTTTTGGTTAATCACATATTTAATTTATGTGTCGGGTTCTTTATCTTATGTATTCTTGACACGAGGGATGAAATTCTTATTCTCAGGTAAATTGACTTGTTGATCTTGTACTTGGATCAAAGTTTGATGTCTTTGAGTGTTTTTAAGGTATTTTCATCGTGTGTTAAAGTCAGGCATTTAAAGAAATTTTGGTCTTTAAAGACTTTAGGTCTTTAAATTTTATAATATTCAAATCGCTTTCCTTTCAAAAAGTCTTCAGCCTTTTGATCTTTGCAAGTCTTCACAATACTTTTAAACGTGTTTGTGTGAGCTTTGGGTTCTATTATTTGGATTTGGAACACTGAACTCGAATTCAAATATTATGACTCAATTTGACTAAACTAGGCTTATTTGATTATATGGTCATTACGAACATTATAAAAGCTTCAATTTGTAATTAATTTAAATTCAATATTTTTTTAATTTCTTCAGACATTGGAGAAATAA

mRNA sequence

ATGGCTAAATGTGAAAAGCTACCATTTACAATGTCCTTACATCCTGCAGAAGTTGAGCCGAAGCAGAAGTTAGCTTTAAAGAAAGTGGACTTTGACTTTGAATTTTTAGCCGCCGACGTTTCCTCCTTTTTTATGTCAAATTCCTTGAAGGAGAAGTCATCTCACCTGGGAAATGTTGCACCAAATGCTGAACTCAACTCTGCTTTCAACTGCTTGACATTGGAGAAATAA

Coding sequence (CDS)

ATGGCTAAATGTGAAAAGCTACCATTTACAATGTCCTTACATCCTGCAGAAGTTGAGCCGAAGCAGAAGTTAGCTTTAAAGAAAGTGGACTTTGACTTTGAATTTTTAGCCGCCGACGTTTCCTCCTTTTTTATGTCAAATTCCTTGAAGGAGAAGTCATCTCACCTGGGAAATGTTGCACCAAATGCTGAACTCAACTCTGCTTTCAACTGCTTGACATTGGAGAAATAA

Protein sequence

MAKCEKLPFTMSLHPAEVEPKQKLALKKVDFDFEFLAADVSSFFMSNSLKEKSSHLGNVAPNAELNSAFNCLTLEK
Homology
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BLAST of Carg22243 vs. NCBI nr
Match: KAG7015148.1 (hypothetical protein SDJN02_22781, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.9 bits (385), Expect = 1.1e-33
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MAKCEKLPFTMSLHPAEVEPKQKLALKKVDFDFEFLAADVSSFFMSNSLKEKSSHLGNVA 60
          MAKCEKLPFTMSLHPAEVEPKQKLALKKVDFDFEFLAADVSSFFMSNSLKEKSSHLGNVA
Sbjct: 1  MAKCEKLPFTMSLHPAEVEPKQKLALKKVDFDFEFLAADVSSFFMSNSLKEKSSHLGNVA 60

Query: 61 PNAELNSAFNCLTLEK 77
          PNAELNSAFNCLTLEK
Sbjct: 61 PNAELNSAFNCLTLEK 76

The following BLAST results are available for this feature:
BLAST of Carg22243 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7015148.11.1e-33100.00hypothetical protein SDJN02_22781, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg22243 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg22243 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg22243 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22243-RACarg22243-RAmRNA